mRNA_E_fasciculatus_S2_contig938.17432.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig938.17432.1
Unique NamemRNA_E_fasciculatus_S2_contig938.17432.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: SFM (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGI0_ECTSI)

HSP 1 Score: 510 bits (1314), Expect = 6.930e-175
Identity = 357/401 (89.03%), Postives = 359/401 (89.53%), Query Frame = 1
Query:    1 MSEDADMKDAPEGVKAEEAEPKEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKSASSGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAPKPSFVPRKMQMGGEPAAGAAAGAAGAPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPEAYSSDKTLLATAAADKTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRYLGXXXXXXXXXXXXXXXXEELLLQ 1203
            MSEDADMKDAPEGVKAEEAEPKE          XXXXXXXXXXXXXXXX          SGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEA+RRARTMVVPTKTEDVA KLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEE EKIEGMVAPKPSFVPRKMQMGGEPAAGAA      PPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEE SA+DRRAVETFSTMKNLAINSSQF DDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGV WHPEAYSSDKTLLA        XXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRYLG   XXXXXXXXXXXXXEELLLQ
Sbjct:    1 MSEDADMKDAPEGVKAEEAEPKEKEAKNGDDKMXXXXXXXXXXXXXXXX----------SGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEADRRARTMVVPTKTEDVAKKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEEAEKIEGMVAPKPSFVPRKMQMGGEPAAGAAXXXXX-PPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEETSAVDRRAVETFSTMKNLAINSSQFADDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVTWHPEAYSSDKTLLAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSGRYLGTASXXXXXXXXXXXXXEELLLQ 390          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: Quinon (protein alcohol dehydrogenase-like superfamily n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL38_9STRA)

HSP 1 Score: 221 bits (562), Expect = 7.220e-63
Identity = 138/284 (48.59%), Postives = 179/284 (63.03%), Query Frame = 1
Query:  181 GSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAPKPSFVPRKMQMGGEPAAGAAAGAAGAPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPEAYS-SDKTLLATAAADK 1029
            G+ A++ A  +GNINIH    TE+M+LS  S+E Q +HA +L++VEA RRARTM VPT  E+VA  LR+LGQP+RLFSE +AD+RERLR  +A  +++ E    +  ++A              EPA  AAA          K EVVYT A+  L+EAR  IA+ SF  A  RLA AKRRR     ASA D  A    + +K L IN S  GD+RPLSA++VSPDG  VAS +W+ + KLW++++L    V RGH ER+TGVAWHP A + +   LL TAAADK
Sbjct:   28 GASAVEKARASGNINIHDIAQTEVMELSAASREEQDKHAEMLRKVEAHRRARTMAVPTLPEEVARALRRLGQPIRLFSETLADVRERLREHLAQLQLDGEGDAAVASLLA------------AAEPAKAAAAAVEEG-----KAEVVYTVAAAPLIEAREVIASYSFAAAPQRLARAKRRRLDSAVASAEDAAAAAACTRLKGLVINVSAVGDERPLSAVRVSPDGSLVASAAWSGVAKLWNMKDLRPCGVFRGHKERLTGVAWHPRALTEAGPALLVTAAADK 294          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WFU9_9STRA)

HSP 1 Score: 199 bits (506), Expect = 2.710e-55
Identity = 129/289 (44.64%), Postives = 176/289 (60.90%), Query Frame = 1
Query:  184 SDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAPKPSFVPRKMQMGGEPAAGAAAGAAGAPPAAKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRG---HSERVTGVAWHPEAYSSDKT--LLATAAADKTA 1035
            S A++AAV+AGNINI +    E+++LS  S + Q  HA LL++VEAERRAR++VVPT  E+V  +LR +GQPVRLF EN+ADIRERLR FIA  +++ +E           P  +   M+                P A +K   VY+ AS  L+EAR  I   S      R+AG KRRR + EE + +D  A ET+  M+ LAI++SQF D+RPL A + +P    VAS S    +KLWD E+LE + +L G   H+ER TG+AWHP+A+ S     LLA+++AD TA
Sbjct:   17 SAALQAAVRAGNINIAEGGKMEVLELSATSLDEQDRHAVLLRRVEAERRARSIVVPTNPEEVRQQLRSIGQPVRLFGENLADIRERLREFIARRQLDGDEA----------PGMLTEPMEED-------------KPKAPEKKADVYSEASADLVEARQRIFDYSSTHTVERMAGVKRRRESAEERARVDESAKETYKDMRALAISASQFADERPLGACRCAPHADVVASASLAPYIKLWDTESLESKGILGGPGAHTERATGLAWHPQAFGSMDAAPLLASSSADTTA 282          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: SFM (domain-containing protein n=5 Tax=Phytophthora TaxID=4783 RepID=G4ZDF0_PHYSP)

HSP 1 Score: 184 bits (467), Expect = 2.690e-49
Identity = 121/293 (41.30%), Postives = 175/293 (59.73%), Query Frame = 1
Query:  193 IKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAPKPSFVPRKMQMGGEPAAGAAAGAAGAPPAAKKVE---VVYTPA-SDALLEARAAIA--TMSFGRAKSRLAGAKRRRGTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPEAYSSDKT------LLATAAADKTA 1035
            ++AA++AGN+N+     TE++ LSE S+ AQ++HA+LL+++EAE+RAR + VPT  E+V  +LRQLG+P+ LF E  AD RERLR  ++  E+E EET    G V    + + ++    G PA G AAG  GA   A K +   + Y P  +D L  ARAA+   T S   A+ +    +++    E A  +D  A E ++T   +A  +SQ GD RPL++++ S DG  VA+GSW+ LVK+WD  N    KV RGH +RV+ VAWHP    S+ T       L + +AD TA
Sbjct:   37 LEAAIRAGNVNVSDNVETEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEET----GFVHQVLADIQKQDGGAGAPAEGTAAGDEGAAGQASKPQEDQLFYVPIKNDGLKTARAAVFAHTTSVVGARLKRERQEKQMSAEERARTMDHHAAELYATALRMANIASQNGDVRPLASVRYSADGAHVATGSWSSLVKVWDANNAAEVKVFRGHEDRVSAVAWHPSNTFSEMTDGADSVCLCSGSADGTA 325          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: SFM (domain-containing protein n=14 Tax=Phytophthora TaxID=4783 RepID=W2R6V2_PHYPN)

HSP 1 Score: 182 bits (462), Expect = 1.270e-48
Identity = 124/299 (41.47%), Postives = 177/299 (59.20%), Query Frame = 1
Query:  184 SDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAPKPSFVPRKMQMGGEPAAGAAAGAAGAPPAAKKV------EVVYTPA-SDALLEARAAIATMSFGRAKSRLAGAKR--RRGTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHP-EAYS-----SDKTLLATAAADKTA 1035
            S  ++AA++AGN+N+     TE++ LSE S+ AQ++HA+LL+++EAE+RAR + VPT  E+V  +LRQLG+P+ LF E  AD RERLR  ++  E+E EET    G V    + + R+          A AGAAGA  AA+K       ++ Y P  ++AL   RA I   +     +RL   ++  R    E A  +D  A E ++T   +A  +SQ GD RPL++++ S DG  VA+GSW+ LVK+WD  N    KV RGH +RVTGVAWHP  A+S     +D   L + +AD TA
Sbjct:   34 SSNLEAAIRAGNVNVSDNVETEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTIVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEET----GFVHEVLADIQRQ---------DAGAGAAGAEGAARKATKPQEDQLFYVPIKNEALKGVRATIFAHTASVVGTRLKRERQEQRMSLEERARTIDHHAAELYATALKMANVASQNGDVRPLASVRYSADGAHVATGSWSSLVKIWDATNANEVKVFRGHEDRVTGVAWHPTSAFSEMTDGADSVCLCSGSADGTA 319          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: U4/U6 (small nuclear ribonucleoprotein Prp4 (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4X876_9STRA)

HSP 1 Score: 178 bits (451), Expect = 2.710e-48
Identity = 123/304 (40.46%), Postives = 185/304 (60.86%), Query Frame = 1
Query:  169 SASSGSDA--IKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAPKPSFVPRKMQMG-GEPAAGAAAGA---AGAPPAAKKVEVVYTPA-SDALLEARAAIA--TMSFGRAKSRLAGAKRRRGTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPEAYSSDKT------LLATAAADKTA 1035
            S+SSG  A  ++AA++AGN+N+     TE+++LSE S+ AQ++HA+LL+++EAE+RAR + VPT  E+V  +LRQLG+P+ LF E  AD RERLR  ++  E+E EET  +  ++A       +K ++G G   +GAA      AG     ++ ++ Y P  ++ L  ARAAI   T +   A+ +    +R+    E A  +D+ A E ++T   +A  +SQ GD RPL++++ S DG  VA+GSW+ LVK+WD  +    KV RGH +RVTGVAWHP    S+ T       L + +AD TA
Sbjct:   27 SSSSGRMASNLEAAIRAGNVNVSDNVETEVLELSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLREILSRLELEAEETGFVHQVLADI-----QKQEVGTGAGESGAATREERRAGRYTKPQEDQLFYVPIKNEKLKSARAAIFAHTTTVVGARLKRERQERQMSAEERARTVDQHAAELYATALKMANIASQNGDVRPLASVRFSADGNHVATGSWSSLVKVWDASSANEVKVFRGHEDRVTGVAWHPNNVFSEMTDGADSVCLCSGSADGTA 325          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: SFM (domain-containing protein n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7GQX6_9STRA)

HSP 1 Score: 182 bits (461), Expect = 2.320e-47
Identity = 124/304 (40.79%), Postives = 179/304 (58.88%), Query Frame = 1
Query:  166 KSASSG---SDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAP--KPSFVPRKMQMGGEPAAGAAAGAAGAPPAAKKVEVVYTPA-SDALLEARAAIA--TMSFGRAKSRLAGAKRRRGTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPEAYSSDKT------LLATAAADKTA 1035
            +SAS G   +  ++ A++AGN+N+     TE++ LSE S+ AQ++HA+LL+++EAE+RAR + VPT  E+V  +LRQLG+P+ LF E  AD RERLR  ++  E+E EET  +  ++A   K   VP     GGE  AG     A      ++ E+ Y P  +D L + RAAI   T S   A+ +    +++    E A  +D  A E ++T   +A  +SQ GD RPL++++ S DG  VA+GSW+ LVK+WD  N    KV RGH +RVTGVAWHP    S+ T       L + +AD TA
Sbjct:   28 RSASGGGRMASNLETAMRAGNVNVSDNVETEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVEEVIRRLRQLGEPITLFGERPADRRERLRGILSQLELEAEETGFVHQVLADIQKQGAVPG----GGETIAGETGAEADQSDKPQEDELFYVPIKNDQLKKVRAAIFDHTTSIVGARLKRERQEKQMSEEERARTVDHHAAELYATTLRMANIASQNGDVRPLASVRYSADGAHVATGSWSSLVKVWDATNAAEIKVFRGHEDRVTGVAWHPSNTFSEMTDGTDSVCLCSGSADGTA 327          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: SFM (domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4B2G3_HYAAE)

HSP 1 Score: 177 bits (450), Expect = 7.130e-47
Identity = 118/297 (39.73%), Postives = 174/297 (58.59%), Query Frame = 1
Query:  172 ASSGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAPKPSFVPRKMQMGGEPAAGAAAGAAGAPPAAKKVEVVYTP-ASDALLEARAAIATMSFGRAKSRLAGAKRRRG--TPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHP-EAYSS-----DKTLLATAAADKTA 1035
            AS+ + + + A++ GN+N+     TE+++LSE S+ AQ++HA+LL++VEAE+RAR + VPT  E+V  KLRQLG+P+ LF E  AD RERLR  ++  ++E EE   +  +              G E AAGA   A G    A + ++ Y P  ++ + + RA I   +     +RL   ++ R     E A  +D+ A   +S  + +A  +SQ GD RP+SA++ S DGG VA+GSW+ LVK+WD  N    KV RGH +RVTGVAWHP +A+S      D   L + +AD TA
Sbjct:   27 ASTVNASGEVAIRVGNVNVSDAVETEVLELSESSRAAQEKHAQLLRRVEAEKRARNVAVPTVVEEVIRKLRQLGEPITLFGERPADRRERLREILSRLDVEAEENGYVRQVFGDIEKQEIAADAAGDERAAGAGETATGKLSRAHESQLFYVPLTNEKMKKVRATIFAHASSATGARLKRERQERSMSAEERARTVDQYAAGLYSAAQKMANVASQNGDVRPISAVRFSADGGHVATGSWSSLVKVWDATNANEVKVFRGHEDRVTGVAWHPTKAFSEMTDSGDSVCLCSGSADGTA 323          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: SFM (domain-containing protein n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XLR5_9STRA)

HSP 1 Score: 176 bits (446), Expect = 3.030e-46
Identity = 121/308 (39.29%), Postives = 176/308 (57.14%), Query Frame = 1
Query:  169 SASSGSDAI----KAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAPKPSFVPRKMQMGGEPAAGAAAGAAGAPPAA------KKVEVVYTPASDALLE-ARAAIATMSFGRAKSRLAGAKRRR--GTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPEAYSSDKT------LLATAAADKTA 1035
            SAS G   I    +AA++AGN+N+     TE++ LSE S+ AQ++HA+LL+++EAE+RAR + VPT  ++V  +LRQLG+PV LF E  AD RERLR  ++  E+E EET  +  ++A          + G  P AG  A               ++ ++ Y P  +  L+ ARAAI   S     +RL   ++ +     E   A+DR A E ++T   +A  +SQ GD RPL++++ SPDG  VA+GSW+ LVK+WD  +    KV RGH +RVTG+AWHP    S+ T       L + +AD TA
Sbjct:   31 SASGGGGHIASNLEAAIRAGNVNVSDNVETEVLQLSESSRAAQEKHAQLLRRIEAEKRARNIAVPTSVDEVIRRLRQLGEPVTLFGERPADRRERLRELLSRLELEAEETGFVHQVLADI-------QKQGSAPGAGEEAAXXXXXXXXXXXXKPQEDQLFYVPIKNVELKNARAAIFAHSVSAGSARLKRERQEKQLSAEERTRAVDRHAAELYATAAKMANIASQNGDVRPLASVRYSPDGAHVATGSWSSLVKVWDATSAVEVKVFRGHEDRVTGLAWHPTNVFSEMTDGADTVCLCSGSADGTA 331          
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Match: SFM (domain-containing protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VKG6_9STRA)

HSP 1 Score: 175 bits (444), Expect = 5.310e-46
Identity = 121/297 (40.74%), Postives = 173/297 (58.25%), Query Frame = 1
Query:  193 IKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHARLLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRRFIAASEMEDEETEKIEGMVAP--KPSFVPRKMQMGGEPAAGAAAGAAGAPPAAKKVEVVYTPA-SDALLEARAAIATMSFGRAKSRLAGAK-------RRRGTPEEASALDRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKLWDIENLEMRKVLRGHSERVTGVAWHPEAYSSDKT------LLATAAADKTA 1035
            ++AA++AGN+N+     TE+++LSE S+  Q++HA LL+++EAE+RAR +VVPT  E V  +LRQLG+P+ LF E  AD RERLR  ++  E+E+EET  +  ++A   +  F       G E  AG    A       ++ ++ Y P  +D L   RAAI    F  A SR+ GA+       R R   E A  +D  A E ++T   +A  +SQ GD RPLS+++ S DG  VA+GSW+ LVK+WD  +    KV RGH +R+TGVAWHP    S+ T       L + +AD TA
Sbjct:   37 LEAAIRAGNVNVSDNVETEVLELSESSRAVQEKHAHLLRRIEAEKRARNIVVPTIVEVVIRRLRQLGEPITLFGERPADRRERLREILSRLELEEEETGFVHQVLADIQQQGF---GADAGVEKTAGRGETALDNVTKLEENQLFYVPIQNDRLKNVRAAI----FSHA-SRVVGARLKRERQERNRSPEERARTVDHHAAELYTTALKMANIASQNGDVRPLSSVRYSADGAHVATGSWSSLVKIWDATSANEVKVFRGHEDRITGVAWHPSYTLSEMTDGADSVCLCSGSADGTA 325          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig938.17432.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
SFM6.930e-17589.03domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Quinon7.220e-6348.59protein alcohol dehydrogenase-like superfamily n=1... [more]
Hypothetical2.710e-5544.64protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
SFM2.690e-4941.30domain-containing protein n=5 Tax=Phytophthora Tax... [more]
SFM1.270e-4841.47domain-containing protein n=14 Tax=Phytophthora Ta... [more]
U4/U62.710e-4840.46small nuclear ribonucleoprotein Prp4 (Fragment) n=... [more]
SFM2.320e-4740.79domain-containing protein n=2 Tax=Phytophthora ker... [more]
SFM7.130e-4739.73domain-containing protein n=1 Tax=Hyaloperonospora... [more]
SFM3.030e-4639.29domain-containing protein n=2 Tax=Nothophytophthor... [more]
SFM5.310e-4640.74domain-containing protein n=2 Tax=Peronospora effu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig938contigE_fasciculatus_S2_contig938:20202..25730 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score513.8
Seed ortholog evalue7e-143
Seed eggNOG ortholog2880.D8LGI0
Model size1203
KEGG koko:K12662
KEGG Pathwayko03040,map03040
KEGG ModuleM00354
Hectar predicted targeting categoryother localisation
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0015030,GO:0016070,GO:0016071,GO:0016604,GO:0016607,GO:0017069,GO:0017070,GO:0030532,GO:0030621,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0046540,GO:0070013,GO:0071001,GO:0071005,GO:0071011,GO:0071704,GO:0090304,GO:0097159,GO:0097525,GO:0097526,GO:0120114,GO:1901360,GO:1901363,GO:1990904
Exons8
EggNOG free text desc.U4 snRNA binding
EggNOG OGsKOG0272@1,KOG0272@2759
Cds size1203
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03041
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig938.17432.1prot_E_fasciculatus_S2_contig938.17432.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig938 20202..25730 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842587.3781345-CDS-E_fasciculatus_S2_contig938:20201..204421696842587.3781345-CDS-E_fasciculatus_S2_contig938:20201..20442Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 20202..20442 +
1696842587.3917294-CDS-E_fasciculatus_S2_contig938:21880..220221696842587.3917294-CDS-E_fasciculatus_S2_contig938:21880..22022Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 21881..22022 +
1696842587.4053297-CDS-E_fasciculatus_S2_contig938:22288..223671696842587.4053297-CDS-E_fasciculatus_S2_contig938:22288..22367Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 22289..22367 +
1696842587.4209092-CDS-E_fasciculatus_S2_contig938:23096..232851696842587.4209092-CDS-E_fasciculatus_S2_contig938:23096..23285Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 23097..23285 +
1696842587.434316-CDS-E_fasciculatus_S2_contig938:23867..240591696842587.434316-CDS-E_fasciculatus_S2_contig938:23867..24059Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 23868..24059 +
1696842587.4438038-CDS-E_fasciculatus_S2_contig938:24392..244611696842587.4438038-CDS-E_fasciculatus_S2_contig938:24392..24461Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 24393..24461 +
1696842587.4532304-CDS-E_fasciculatus_S2_contig938:24676..247921696842587.4532304-CDS-E_fasciculatus_S2_contig938:24676..24792Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 24677..24792 +
1696842587.462461-CDS-E_fasciculatus_S2_contig938:25555..257301696842587.462461-CDS-E_fasciculatus_S2_contig938:25555..25730Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig938 25556..25730 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig938.17432.1

>prot_E_fasciculatus_S2_contig938.17432.1 ID=prot_E_fasciculatus_S2_contig938.17432.1|Name=mRNA_E_fasciculatus_S2_contig938.17432.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=401bp
MSEDADMKDAPEGVKAEEAEPKEEEEEEEAKNGDDEKMPPPAAAAAAAAA
SGASNKSASSGSDAIKAAVKAGNINIHQQEHTEIMDLSEESKEAQQEHAR
LLKQVEAERRARTMVVPTKTEDVANKLRQLGQPVRLFSENVADIRERLRR
FIAASEMEDEETEKIEGMVAPKPSFVPRKMQMGGEPAAGAAAGAAGAPPA
AKKVEVVYTPASDALLEARAAIATMSFGRAKSRLAGAKRRRGTPEEASAL
DRRAVETFSTMKNLAINSSQFGDDRPLSAIQVSPDGGTVASGSWTCLVKL
WDIENLEMRKVLRGHSERVTGVAWHPEAYSSDKTLLATAAADKTAKLWDC
HTGECVQTFHGHAGRLARVGFHPSGRYLGTASFDHTWRLWDAETGEELLL
Q
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mRNA from alignment at E_fasciculatus_S2_contig938:20202..25730+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig938.17432.1 ID=mRNA_E_fasciculatus_S2_contig938.17432.1|Name=mRNA_E_fasciculatus_S2_contig938.17432.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5529bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig938:20202..25730+ (Ectocarpus fasciculatus EfasUO2)
ATGTCTGAAGATGCCGACATGAAGGATGCACCGGAAGGTGTTAAAGCGGA AGAGGCTGAGCCGAAGGAGGAGGAGGAGGAGGAGGAGGCGAAGAACGGAG ACGATGAGAAGATGCCTCCGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCT AGCGGTGCCAGTAACAAGAGTGCATCGTCGGGATCGGACGCAATCAAGGC CGCGGTGAAGGCCGGCAACATCAACATACACCAACAAGAACGTGAGGTTT CTGCTAGCAGTATTGCGTGGGCTGGGATGCAGCTCTCTGGTCCTACGGAG CAGTGCAGCGAAGCCAGAAATCCAACAATAGCAGTACTGTAAGAGAGTTC ACATGTGGTGCCACGGAGCCCCCTCTCGACTCGATCTTTTCGATGTATCC TGTGGTGCACTGCTCCCGGCATGCCACACGCACAAGGGATATGCCATTAT GCAACGACTCCGTTTGGGGGGTGGGAACAGCTGCACACTCTTACTCTTCT CTGTTTTATTTTTCGGTGCCACAACTTGAATCATGGGTCAAGTCATTGAT TTCTTGCCCGATGGCCAAACGGCGAGGCATCCAAAAACATTATTTTTAGC TCACAGGTCCGACTTCGGCCGCCAAAGCATTACTATAGTTGGGTTTACGT TGGGTTCGGCTGTGCATACGAAGTAGAGGCCGACCGATCAATGAGTTTTC TGTTCGAACCAGCATCATTTGGAGCCACGACTTCGGACATGGCATAAAAT TTTTGTTGCCTTGAAGGCAAGGCAAGAGCAAACACAGTCAACAGTGGAAA CGGGGCTCCGTCGAATCGGAGATGTCTCGCATTTTGTGGGAGACCTTGGG GAGACCGGAAGTTGACGGAAGGCGAAAAGATGTGTCAAATGTAAGGCATC CAAATTATTAATACAAATCCACTCTAGCGTCTGTGTGTCGAGGTATGTAC TGATTCTCGCATCAAAACAAGCCTGTCGGCCATGGGCCTGGCGGGGGGAA GCAGAGAGAGAGAGAGAGAGAAAGCAGGCACACAAACCACGCCTGAAACC ATTTGCGTTTGCGATCTGAGACCACCTCAACCAGAAGAGCAGTAAAGTAG TGACGCCACAGCACTCCTGTTGATGAAAACCCGCACGCAACGACCGTTTG GTTTCAACCATGTCTCCGGGCAAATTCGGCTACTGACCGGACCCATTTTC GATGGACAATTCAGTACACGTGCGGATGTATATCCTGGATTTGTCGGAGC GAAGAGAGCTTGGACAGCAGGAGTTTAATGCACTGAGAGAGAGAGCGTTG TGTCCCACGTTCCCAAGATGGTGCCGTCGAATAGTGACAGCAACCGCTGT TGGGCGCCCGAAGTCTGCTCGTCTTATTGGTTTAACGTGCTATGCATAAC AACCGCAAACAGAGGTGATTGTATCTGTCAGGGGAGGAGCGTCAGCGAGC GCACAGCAACGGCGGCGTGTGGCGTGTATCCCCATCACTGCCACAGATCT TTAGTTTTTCCACCCCGTGTATGGTCCCTTGCGAATGGAACCTGAACGGA CTCCACCTTGCTGCCTGACTTGGCTTTTGGCGCGATGCACCGCAAACGTA TGCGTTGTTCCTTGCGAGTTGACTGACCGGACTCCACCTTGCTGATTGGC TTGGCGCTCCTTAACGCCACGCGAAATAGACACGGAGATCATGGATCTGT CGGAGGAGAGCAAGGAGGCCCAGCAGGAGCACGCCCGGCTGCTCAAGCAG GTAGAGGCGGAGCGGCGCGCTAGGACCATGGTGGTGCCCACCAAGACCGA GGATGTGGCCAACAAACTCAGGTGTGCGCTTGGCCATCCATCCCTCGGTG TGCGTGCGGCGTGCCCCCGAAACTACAAGATCGATGTACATACTTCCGTG TGCCCTCTCGCGCATTGTAAACAAAGAGAGCTCCGGGTCTGATGGCACCA AAAAGTGGCTGGTTTATTTGCCCTTGGTTTCTCCCATGCAAGTGCTGCCG CTTGGTCCGTTTTGCTCGGTCGCCGTTCCTTTTTGCCTCATGTCTTTTTT TTTTGCTTCTTTTGTCCATCCCACCCCAAATCTACAGGCAGCTGGGGCAG CCTGTTCGCCTCTTCTCAGAAAACGTCGCCGACATACGGGAGCGTCTCCG GAGATTCATCGCGGCGGTAAGTAAGAACTGGCGTCGTCTCGTGCTATTGA CTATTGACTTATCAGTTAACAGCATCCCCGCACGCTGCCTTGTTGTTGCG CCTCGGGAGAAACGTCGCGGCAGCGAGGGGCCAGGAGTGACGGCATTTTT TTGAGTCTACAGCAGTACTGCTGTACCCCGACGAGTGCTGTCTTTTATGT TCTGCCTCGACAGAAGGGTGTTGGAGGTTGGGAAGGGTTACACACACGTG TGTGTTTTTTTCCTTTGAAAGTAGATTCGTGTGGGCATCGTGTGTGTGTG TGTGTTGTGCTTTAATAGTAGCTTGTGTGGGTATCATCTATCACCATTTA GTCCACCGAACTAGGGCAGCGGACCCTATTGGTTTGTGCCTCCTATGCAT AGCCTTGCGTGGTCCTGAAGCTCGTTGATGTCAACGATCGAAACTCCGAA AGACAGACGCGATAGACAAGAATACAGGCGCGCCCCGCATGAAAATATGT TCTGATTTATTTTTGCATACAGAATGGGTGGAAACGACAAAATCTAACCG CCGTGGTGTTGGTCCATCCCTTCTCTTTCCTCTTTGGCACGTATCCACGA CAACGAAGCATGTGGCATTCAATAACCCCCCCCCCCGTAGACATCTTGAC ATGGTTCTGCCCAAATCTGCTCCGATAATACGTACGACAGCGCCAATCAC ATTTATGTTGTGCGCCGCTCGTCTGCAACACGTACGTTTGACCAGTCGGA GATGGAGGACGAGGAGACTGAGAAGATTGAGGGCATGGTAGCCCCCAAGC CCTCGTTCGTGCCCAGAAAGATGCAGATGGGCGGCGAGCCGGCGGCGGGG GCGGCGGCGGGAGCGGCGGGGGCACCACCGGCGGCTAAAAAAGTGGAGGT GGTTTATACCCCTGCTTCGGACGCCCTCCTGGAGGTAGGAATGTTAATGT TGTGATTGTTTATCACGCGTTGGTGCTTTCGGTGGATGCCGCTCGTGTTG GTGTTTTAACGGGTTGTGGTGCTGTGGCGGCCGTGAGGTTAAAGCTGTCG CGGTGTTTGGTTTGGTGTGATGTTGCAGATACGAGGGTTTTACGTAACGA CGGCGTTTGAAACGGGCTCAAATCGCGGCGTCGTCGGGTGATCGAAGTCG TCATCCCTGCCGCCCAGCACGATGTGCGGCCAGTATCCGAAAAAGATGGG AAGCAAAGCAAGGTATACGCATGGCCCTTTTCTGCCTTTTCTGCGTCGTG CACTGGCGCGGACACCTTGCATCCCCCTAAAGAGCGTCTATCGCAATTTT TCCGTTCGGCTGCGTGCCAACAGTCGCCCGGCCGAAGCGAAGCGAAATGT TTTCCGGGATCGAACCCATACAACGAAGTTCAGGCTAACTAACCCCCCCA GTTCGCTCGCACGCGCACAGCAGTTGCTTTGAGTGACACGCTTTCATCGG TCGGTCAGCTAGACAGAGCACGTGATGCTAGCATGTCTTCCCGTCTCTCT CCGGCCTTTGCGTCAGGCAAGAGCGGCTATCGCAACGATGTCGTTCGGGC GTGCCAAGAGCCGTCTGGCGGGGGCGAAACGGCGCCGCGGAACTCCAGAG GAGGCGTCGGCGCTCGACCGACGCGCGGTGGAGACGTTCTCGACGATGAA GAACCTAGCCATCAACTCCAGTCAGTTCGGGGACGACCGACCTCTGTCGG CAATACAGGTATGTAGTGATGGCGATGCTCCTGATGTGTTGTTGTCGGGT GTTGTTGTTGTTGTTGCTGTTGCTCTTCTCATATGATTTGAGTAGTTGGC TGAGTCGCAAGACTAATCGCTTGGGCCAGTGACTGCCGGAAGTGAGGTGT TGGTGACTTCGTACTGCAACTTGAACAATTTGATTGATAGTACCTGTGTT GTTGGCCGTATCTGAGCTAGCTAGCTATCTCCTGGTTGCGTGCTAGTCTC AGAATGTTGGCAGTTGAGAGCCACTGCTGCTGCTGCTGCTGCTGCTGCCG CCGCCGCCGCTGATCTCGCTCGTGTATCGCCCGCTGTTCAGGTCTCGCCG GATGGGGGCACCGTAGCTTCGGGAAGCTGGACCTGCCTGGTGAAGCTGTG GGACATCGAGGTAGGCAAGGCCCGCCCCCCCCCCGTTGCCTGTGGAGAGA CACACCGCTTCCACATAAATATCTAGTACCCCGTATAGGAATTTGTGGCG TCATGGGGGAGTTTTTTCCGTCGTTTGTCTTCTCGCCCCCACGCCTCACG TGCTTACACAACATTTGTCTTTACGGAGCCACCCTGCTCTTTTATCTTGG CATCTCTCTGGACGACGTATCGCAGAACCTGGAGATGCGCAAGGTGCTGC GAGGGCACAGCGAGAGAGTGACCGGCGTCGCATGGCATCCGGAAGCCTAC TCCTCGGACAAGACCTTGTTGGCAACCGCCGCCGCCGACAAGTAAGCCTT TGGGGGTGTTGCTCATGTTTCTGTTGGTGGTTGGCGTTCTCTGTGATTGT TGGTGTGGGTTATTCGGCCGCTGTGTTCCAATTCATCGTCGGGGGTTCCA AAGTGAGTGTTGTGGTCGCTCTTCTTTCCCGTCTTTTGTTGCGTTGGCTG CGTGGTGTTGGGAAACGGTTGCCAGTTGTTGGCTCGTGTTGGAAGAAAAC CGCTCGTTATCTCTCCCTTTCGACTCAAACCCGGGCAGAGGAAAGCTGCA AAGCGGCGGGGATTCTCGTCCTTGACCCCAACCCCCCCCCCCCCCCCCCC CCCCCCCACNNNNNNNNNNATACCCACTGTTGCATATGTACCTACTGGAT TATTGCTCGAAGAACCTCTCCAAGCACGAGGTAATACGCAAAGAAAGAGA CCCCCCCCCCCCTCCAGTCCAGTGTCGACTCGCTTGTTTTTTGTGGCAAT CCAAACCAAACCGGAAAGAGAAAGGCAAAGTCTTCCAAGATCAACAGCAG ACCTTCAACACCCCTCCTCATTTTCAACTATTTACACATTCCACTACCGC GGTCGCCATTGGCCACTCTTCCCCGAGAGTAGAAAAATACCAAGACGCAT CAAGCCATAAAAGGCAAACACCAGCACCCTCCTTCCACACACACCCTGTC TGCCTGAAATCTTCGTAAAAATTTCGTAGCAAATTCCAAATCAAACACTG AATATCCTCGGCTCAACAATCGTAGTAATTCTAAATCCAAACACGCCTTC ACAGGACGGCGAAGCTGTGGGACTGCCACACCGGGGAGTGCGTGCAGACT TTTCACGGGCACGCGGGGCGGCTGGCGAGGGTGGGCTTCCACCCGAGCGG GCGTTACTTGGGCACGGCGAGCTTCGACCACACGTGGAGACTGTGGGACG CGGAGACGGGGGAGGAGCTGCTCTTGCAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig938:20202..25730+

>mRNA_E_fasciculatus_S2_contig938.17432.1 ID=mRNA_E_fasciculatus_S2_contig938.17432.1|Name=mRNA_E_fasciculatus_S2_contig938.17432.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1203bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig938:20202..25730+ (Ectocarpus fasciculatus EfasUO2)
ATGTCTGAAGATGCCGACATGAAGGATGCACCGGAAGGTGTTAAAGCGGA
AGAGGCTGAGCCGAAGGAGGAGGAGGAGGAGGAGGAGGCGAAGAACGGAG
ACGATGAGAAGATGCCTCCGCCTGCTGCTGCTGCTGCTGCTGCTGCTGCT
AGCGGTGCCAGTAACAAGAGTGCATCGTCGGGATCGGACGCAATCAAGGC
CGCGGTGAAGGCCGGCAACATCAACATACACCAACAAGAACACACGGAGA
TCATGGATCTGTCGGAGGAGAGCAAGGAGGCCCAGCAGGAGCACGCCCGG
CTGCTCAAGCAGGTAGAGGCGGAGCGGCGCGCTAGGACCATGGTGGTGCC
CACCAAGACCGAGGATGTGGCCAACAAACTCAGGCAGCTGGGGCAGCCTG
TTCGCCTCTTCTCAGAAAACGTCGCCGACATACGGGAGCGTCTCCGGAGA
TTCATCGCGGCGTCGGAGATGGAGGACGAGGAGACTGAGAAGATTGAGGG
CATGGTAGCCCCCAAGCCCTCGTTCGTGCCCAGAAAGATGCAGATGGGCG
GCGAGCCGGCGGCGGGGGCGGCGGCGGGAGCGGCGGGGGCACCACCGGCG
GCTAAAAAAGTGGAGGTGGTTTATACCCCTGCTTCGGACGCCCTCCTGGA
GGCAAGAGCGGCTATCGCAACGATGTCGTTCGGGCGTGCCAAGAGCCGTC
TGGCGGGGGCGAAACGGCGCCGCGGAACTCCAGAGGAGGCGTCGGCGCTC
GACCGACGCGCGGTGGAGACGTTCTCGACGATGAAGAACCTAGCCATCAA
CTCCAGTCAGTTCGGGGACGACCGACCTCTGTCGGCAATACAGGTCTCGC
CGGATGGGGGCACCGTAGCTTCGGGAAGCTGGACCTGCCTGGTGAAGCTG
TGGGACATCGAGAACCTGGAGATGCGCAAGGTGCTGCGAGGGCACAGCGA
GAGAGTGACCGGCGTCGCATGGCATCCGGAAGCCTACTCCTCGGACAAGA
CCTTGTTGGCAACCGCCGCCGCCGACAAGACGGCGAAGCTGTGGGACTGC
CACACCGGGGAGTGCGTGCAGACTTTTCACGGGCACGCGGGGCGGCTGGC
GAGGGTGGGCTTCCACCCGAGCGGGCGTTACTTGGGCACGGCGAGCTTCG
ACCACACGTGGAGACTGTGGGACGCGGAGACGGGGGAGGAGCTGCTCTTG
CAG
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