mRNA_E_fasciculatus_S2_contig9378.17426.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9378.17426.1
Unique NamemRNA_E_fasciculatus_S2_contig9378.17426.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9378.17426.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9378contigE_fasciculatus_S2_contig9378:3563..4971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size576
Hectar predicted targeting categoryother localisation
Exons3
Cds size294
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842586.8791616-CDS-E_fasciculatus_S2_contig9378:3562..38171696842586.8791616-CDS-E_fasciculatus_S2_contig9378:3562..3817Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9378 3563..3817 +
1696842586.8965163-CDS-E_fasciculatus_S2_contig9378:3842..38811696842586.8965163-CDS-E_fasciculatus_S2_contig9378:3842..3881Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9378 3843..3881 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842586.9133089-UTR-E_fasciculatus_S2_contig9378:3881..39291696842586.9133089-UTR-E_fasciculatus_S2_contig9378:3881..3929Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9378 3882..3929 +
1696842586.927855-UTR-E_fasciculatus_S2_contig9378:4738..49711696842586.927855-UTR-E_fasciculatus_S2_contig9378:4738..4971Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9378 4739..4971 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9378.17426.1prot_E_fasciculatus_S2_contig9378.17426.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9378 3563..3881 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9378.17426.1

>prot_E_fasciculatus_S2_contig9378.17426.1 ID=prot_E_fasciculatus_S2_contig9378.17426.1|Name=mRNA_E_fasciculatus_S2_contig9378.17426.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
PPATRSVLGDTRGARTNSRCQPRCQRLLLVEVYPRALLWQGGKRTRCCRV
CGRGAIGTNGEQRARVTRGSAEEGRNKAAVGLGLTRSRSRCLGCGHA*
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mRNA from alignment at E_fasciculatus_S2_contig9378:3563..4971+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9378.17426.1 ID=mRNA_E_fasciculatus_S2_contig9378.17426.1|Name=mRNA_E_fasciculatus_S2_contig9378.17426.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1409bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9378:3563..4971+ (Ectocarpus fasciculatus EfasUO2)
CCACCGGCAACCAGGAGTGTGCTCGGAGATACGCGTGGCGCCCGCACCAA
TAGTCGTTGCCAGCCTCGTTGCCAGCGTCTGCTGCTTGTGGAGGTCTATC
CCAGGGCTTTGTTGTGGCAAGGAGGAAAAAGAACGCGCTGCTGTCGCGTG
TGCGGGAGAGGTGCGATCGGAACAAACGGAGAGCAGAGGGCGAGAGTGAC
CCGCGGCTCTGCTGAGGAGGGAAGAAACAAAGCTGCTGTTGGCCTCGGGT
TAACTGCTGCTGGTCGCGCGTGTGCACGAGCGCTCCCGCTCTCGGTGCCT
TGGTTGTGGACACGCATAAGTCGCAGCCGCCGGTGCTGCTGTTCTTTCCG
CTACTTCTTCCACCATGGTGAGATTGCCGAGCACGGAGGGATAGGGGGGG
GTGGGGGGCGATGTAAAAAGGTGGTTTGTGGGCAGGTGATGGTTTTGACC
GAGCATGAAGGCAACGAGACACTGCTCTCAGCAACACCCGCTTGCAGTTT
GCCGATGAGACCAATGATGCCATTGCTCCTGTCACCTCTTGTCCTACTTC
GTCCCAAGAACGCAGCATCGCAGTACATAGCTTTTTGCACAAGGAAATAT
GCAAAATGTGCCATGTGCGGTGGGAACTTATATTGGCGTCGTCGTGTTCT
ATTCAGCGTGTACACAGCAGCGAGCTGGCACGTAGACTTCGACTCCTCTG
TGCGGTGTGCTTCGTCCCACAAACTGCTGTAGGTGTGCATTCCTCCAAGC
AGGTTAGCCGCGACTGCCCTGGATAAGACCGTGAGCAGCGTCTGCCTAGA
GGCTGTTGCAAGCTTTGTGCGACAGAGCATGCAAAGAGTGCAACAGCAGT
CCGCCTTTTTTTACGTGTGCGCTTTACTACCCCCCGCGCACAGGCCTAAA
CCCGCCGTTTACCTCTTGTATTTTGTATCTATTTAGTACAAGGGCGAAAC
AATCACTCACCTAAAATGTCACATGACGTATGCTACCACACACCCGGGAC
CGATATTCAAAAACAGCTTGATTTCTTGACGATGAACAGGATACACCATA
CCTCAAACGATACGTTTTTCGGAAAGAGCTTGATTTGTACTTTGTACGCA
ACGCCAAGCCGCCATTTTTTTCGGCCCCGTCATCACTCTCTTTTTTTATC
TGTTGTTTTTGTTTTGCCTGCTTCAGAGTCCACTGCTGTAAAAACGAGGG
GACAAACCTCTCTCACACACACCGCCGTAGGTGACAAGACAAGACAGGGC
CACGATCTTCAAGCTTGATTTCTTGACTTCAAGCTTGATTTCTTGACGAT
GAAGAGGATGTACAGCAGTATATAGGACTCAAGCGAAACGACGTTGCTCG
GAAAGAGCTTTGTACGCAACGCCAAGCCGGCATTACTTTCGGCACCGCAG
TCTCTTCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9378:3563..4971+

>mRNA_E_fasciculatus_S2_contig9378.17426.1 ID=mRNA_E_fasciculatus_S2_contig9378.17426.1|Name=mRNA_E_fasciculatus_S2_contig9378.17426.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9378:3563..4971+ (Ectocarpus fasciculatus EfasUO2)
CCACCGGCAACCAGGAGTGTGCTCGGAGATACGCGTGGCGCCCGCACCAA
TAGTCGTTGCCAGCCTCGTTGCCAGCGTCTGCTGCTTGTGGAGGTCTATC
CCAGGGCTTTGTTGTGGCAAGGAGGAAAAAGAACGCGCTGCTGTCGCGTG
TGCGGGAGAGGTGCGATCGGAACAAACGGAGAGCAGAGGGCGAGAGTGAC
CCGCGGCTCTGCTGAGGAGGGAAGAAACAAAGCTGCTGTTGGCCTCGGGT
TAACTCGCTCCCGCTCTCGGTGCCTTGGTTGTGGACACGCATAA
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