mRNA_E_fasciculatus_S2_contig9373.17423.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9373.17423.1
Unique NamemRNA_E_fasciculatus_S2_contig9373.17423.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9373.17423.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9373contigE_fasciculatus_S2_contig9373:3733..4313 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size581
Hectar predicted targeting categoryother localisation
Exons1
Cds size351
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842586.7116199-UTR-E_fasciculatus_S2_contig9373:3732..39601696842586.7116199-UTR-E_fasciculatus_S2_contig9373:3732..3960Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9373 3733..3960 +
1696842586.73127-UTR-E_fasciculatus_S2_contig9373:4311..43131696842586.73127-UTR-E_fasciculatus_S2_contig9373:4311..4313Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9373 4312..4313 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842586.7215903-CDS-E_fasciculatus_S2_contig9373:3960..43111696842586.7215903-CDS-E_fasciculatus_S2_contig9373:3960..4311Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9373 3961..4311 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9373.17423.1prot_E_fasciculatus_S2_contig9373.17423.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9373 3961..4311 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9373.17423.1

>prot_E_fasciculatus_S2_contig9373.17423.1 ID=prot_E_fasciculatus_S2_contig9373.17423.1|Name=mRNA_E_fasciculatus_S2_contig9373.17423.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=117bp
MSTRNTNPTTTMFQRLLREIPKTSKGQRQPRRHSFDELNTASGTLSLFGS
TDLVRGHRPRKEPNDDHSVCLGTILPSPVHGLDLFLVSETLYGGSGVVVY
ICSLPDRSRHAACPTS*
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mRNA from alignment at E_fasciculatus_S2_contig9373:3733..4313+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9373.17423.1 ID=mRNA_E_fasciculatus_S2_contig9373.17423.1|Name=mRNA_E_fasciculatus_S2_contig9373.17423.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=581bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9373:3733..4313+ (Ectocarpus fasciculatus EfasUO2)
GCTTTGTCTGCTCTTCGTCTACGCTACGTTCCTTTTGGCAAGGTTTCCCT
TTCTCTTGCACTCGCATGGTACATGCATGTGGATGCCGCACTGCGGTGAT
ACATGTATGTACTTGATGCTGCAGCATGGTCGGTGAGACCTTTCGAGATT
CTGTAGTATTGGTCTCTCAAGAGGAATGTCCACGCTACAACCAGTAAACC
CCTAATTTAGAGGCCATCCACTGGATGAATGAGCACTCGAAACACCAACC
CAACCACTACAATGTTCCAGCGGTTGTTACGCGAAATCCCCAAGACTTCG
AAAGGTCAGCGTCAACCTCGACGACACTCATTCGATGAACTGAACACAGC
GAGTGGCACACTCTCCCTATTCGGCAGCACAGATCTCGTTCGCGGACACC
GACCCAGGAAAGAGCCAAATGATGACCACTCCGTGTGCCTGGGGACAATC
CTTCCCTCGCCTGTACACGGACTAGACTTATTTCTGGTGTCAGAGACTCT
TTACGGTGGATCTGGTGTGGTCGTTTACATCTGCTCTTTGCCCGATCGCT
CTCGCCACGCTGCTTGCCCAACGAGCTAAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9373:3733..4313+

>mRNA_E_fasciculatus_S2_contig9373.17423.1 ID=mRNA_E_fasciculatus_S2_contig9373.17423.1|Name=mRNA_E_fasciculatus_S2_contig9373.17423.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=351bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9373:3733..4313+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCACTCGAAACACCAACCCAACCACTACAATGTTCCAGCGGTTGTT
ACGCGAAATCCCCAAGACTTCGAAAGGTCAGCGTCAACCTCGACGACACT
CATTCGATGAACTGAACACAGCGAGTGGCACACTCTCCCTATTCGGCAGC
ACAGATCTCGTTCGCGGACACCGACCCAGGAAAGAGCCAAATGATGACCA
CTCCGTGTGCCTGGGGACAATCCTTCCCTCGCCTGTACACGGACTAGACT
TATTTCTGGTGTCAGAGACTCTTTACGGTGGATCTGGTGTGGTCGTTTAC
ATCTGCTCTTTGCCCGATCGCTCTCGCCACGCTGCTTGCCCAACGAGCTA
A
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