mRNA_E_fasciculatus_S2_contig936.17414.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCS1_9PHAE) HSP 1 Score: 596 bits (1537), Expect = 1.280e-207 Identity = 317/339 (93.51%), Postives = 323/339 (95.28%), Query Frame = 1
Query: 1 MSTGARLSQAIALVVALVSTPRAVSFVGVGSAARMRNIGFEAKAADSLPQGVGERAVRSGIATGRRRRDSRSLAMATVDEEEAIRAAALANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
M TGARLS A+ LVVALVSTPRAVSFVGVGS ARMRNIGFE+ A D P VGER RSG+ATGRRRR SRSLAMATVDEEEAIRAA+LANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKV LGKKESCD+GTIESPKATVVTYVEQDPEFP GSTVKDAVYGADNPLMRAVRAYQ ATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLE+LLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY
Sbjct: 1 MGTGARLSLAMVLVVALVSTPRAVSFVGVGSTARMRNIGFESSAGDR-PHRVGERPARSGVATGRRRRGSRSLAMATVDEEEAIRAASLANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKV-LGKKESCDSGTIESPKATVVTYVEQDPEFPAGSTVKDAVYGADNPLMRAVRAYQQATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLERLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 337
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: ABC (transporter related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLI0_9STRA) HSP 1 Score: 303 bits (776), Expect = 3.270e-94 Identity = 157/256 (61.33%), Postives = 192/256 (75.00%), Query Frame = 1
Query: 250 IRAAALANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
+ A L+ VVTGT ++L +GL+NTFDG RFQF+ + LTVCRGQKLGLVG+NGCGKST+LKV +G +E D+GTI +P T V YV+Q+P FP G+TV +AVY ++ P+MR +R Y+ AT A+ D A RFE+A A M+R WD E A Q+MSRL V L V LSGG++KRVALAAALVQ PDVLLLDEPTNHLDVEAIEWLE LL++R+LTFV VTHDR+FLENVCQEI+ELDT +YRY
Sbjct: 4 VAAEPLSKVVTGTDRLLWVEGLSNTFDGTRFQFKGVDLTVCRGQKLGLVGVNGCGKSTILKV-MGGREDADSGTISAPGRTRVVYVDQEPVFPPGATVLEAVYASEAPMMRTLREYEEATAAVTEHPEDA----AANTRFERAMAAMERENAWDAEGRAAQIMSRLRVDGLRAQSVDRLSGGEKKRVALAAALVQAPDVLLLDEPTNHLDVEAIEWLEDLLSDRALTFVLVTHDRWFLENVCQEILELDTGLMYRY 254
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Abc (transporter atp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ57_9STRA) HSP 1 Score: 254 bits (649), Expect = 3.790e-75 Identity = 132/248 (53.23%), Postives = 176/248 (70.97%), Query Frame = 1
Query: 280 TGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYG-ADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQ-EIIELDTAKLYRY 1017
T VL GL+NTFDG R+QF+DL L++ +GQK+GLVG+NGCGKSTLL+ + G E ++G IE+ K V YV+Q+P FP G VKD ++ + +P M AV AYQ A+EA+ E+A D+F++A+ MD GGW+ ET A Q+ ++L V+ L+ V LSGGQRKR+ LA ALV+KPDV+LLDEP+NHLD++AIEWLE LA R++T + VTHDRYFLE VCQ E+ EL+ A LYR+
Sbjct: 56 TNAETVLWLRGLSNTFDGQRYQFKDLSLSLAKGQKVGLVGVNGCGKSTLLRCI-GGVEKAESGEIETLKGLTVVYVDQEPTFPPGLKVKDVMFSPSGSPAMAAVWAYQKASEALA------TGTEEAYDKFQEASQRMDVTGGWEAETIANQIFTQLNVVDLQDKDVDTLSGGQRKRLGLATALVRKPDVILLDEPSNHLDIDAIEWLEAHLANRAVTAIVVTHDRYFLETVCQSEVWELEDAALYRH 296
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRB9_9STRA) HSP 1 Score: 253 bits (646), Expect = 2.420e-72 Identity = 132/248 (53.23%), Postives = 176/248 (70.97%), Query Frame = 1
Query: 280 TGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYG-ADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQ-EIIELDTAKLYRY 1017
T T VL GL+NTFDG R+QF+DL L++ +GQK+GLVG+NGCGKSTLL+ + G E ++G IE+ K V YV+Q+P F G VKD ++ + +P M AV AYQ A+EA+ E+A D+F++A+ MD GGW+ ET A Q+ ++L V+ L+ V LSGGQRKR+ LA ALV+KPDV+LLDEP+NHLD++AIEWLE LA R++T + VTHDRYFLE VCQ E+ EL+ A LYR+
Sbjct: 567 TNTETVLWLRGLSNTFDGQRYQFKDLSLSLAKGQKVGLVGVNGCGKSTLLRCI-GGVEKAESGEIETLKGLTVVYVDQEPTFTPGLKVKDVMFSPSGSPAMAAVWAYQKASEALA------TGTEEAYDKFQEASQRMDVTGGWEAETIANQIFTQLNVVDLQDKDVDTLSGGQRKRLGLATALVRKPDVILLDEPSNHLDIDAIEWLEAHLANRAVTAIVVTHDRYFLETVCQSEVWELEDAALYRH 807
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P4_HETAK) HSP 1 Score: 236 bits (601), Expect = 7.890e-68 Identity = 124/242 (51.24%), Postives = 168/242 (69.42%), Query Frame = 1
Query: 295 VLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLL-AERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
++ +GL+NTFDG RFQF + L + +G+KLGL+G+NG GKS+LLK G+ + D G I+S K V YV+Q+P+F +G TVK+AV+ +D P+M A+R Y + +E DP +KA FEKAT ++ +GGW+VE ++S+L V L +V LSGG+ KR+AL LV+KPDVLLLDEPTNHLDVEAIEW+E L+ A + + + VTHDR FLENV EI+ELD A+LYRY
Sbjct: 113 IIWCEGLSNTFDGERFQFRGIDLGIHKGEKLGLIGLNGAGKSSLLKAFAGELKP-DEGKIDSVKNARVVYVKQEPKFEQGKTVKEAVFESDIPVMVALRKYYELSARLESGDTDPS-TQKA---FEKATEKVESLGGWEVEATVATILSKLNVYHLMDQKVDGLSGGELKRLALGIGLVEKPDVLLLDEPTNHLDVEAIEWVEDLVRANKDMACLVVTHDRLFLENVADEIVELDRAQLYRY 349
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UDS7_HEMAN) HSP 1 Score: 227 bits (578), Expect = 2.330e-67 Identity = 119/249 (47.79%), Postives = 169/249 (67.87%), Query Frame = 1
Query: 283 GTPQVLV-ADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGS---QVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
G+ QV++ AD L T+DG ++QF+D + RG+ +GL+G+NG GKSTLLK+ L ++E D GT+ K +V YVEQDP + T+++A+Y ++P+M A+R Y+ A A+ G D A +FE+A+ MD G W+V+ A + + L + SL+ S V LSGGQRKR+ALA+AL+Q+PDVLLLDEPTNHLDVE IEWLEK L + ++ + VTHDRYFLE+ C I+ELD + +YR+
Sbjct: 86 GSEQVVLWADSLAKTYDGTKYQFQDATFVLSRGESVGLIGVNGVGKSTLLKI-LSQQEPPDGGTVTLRKGSVFAYVEQDPLVGQTMTIREALYAGNSPVMTALREYEAAAAALSEGGGDG-----AQKKFERASERMDSQGAWEVQNLADRAVDAL-LPSLKDSLDRPVDKLSGGQRKRLALASALMQRPDVLLLDEPTNHLDVECIEWLEKELRDPKMSLLMVTHDRYFLESTCNYILELDNSNIYRH 327
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Hypothetical (protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z6I8_9EUKA) HSP 1 Score: 222 bits (565), Expect = 1.650e-63 Identity = 115/239 (48.12%), Postives = 158/239 (66.11%), Query Frame = 1
Query: 295 VLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLY 1011
+L D L+ T DG +QF D+ LTV RG+++GL+G NGCGKSTL++++ G +S D G + K +VV YV+Q+P PEG TV DA+Y D+ + +A++ +Q A+ + D +A+ E AT MDRV WDVE A++++ L S ++SGGQRKRVALAA+LV KPD+LLLDEPTNHLDV+ IEWLE++L + S + +THDRYFLE C +I ELD LY
Sbjct: 7 LLWGDSLSKTHDGEVYQFRDIDLTVSRGERVGLIGTNGCGKSTLMRILSGT-DSPDKGECRTRKGSVVAYVDQNPMLPEG-TVMDAIYQGDSQVSKALKQFQAASARVS-----MDPTPEALRALEAATEVMDRVDAWDVEAMAKKILQNLLPDMDPMSSTKSMSGGQRKRVALAASLVSKPDLLLLDEPTNHLDVQCIEWLEEVLEDTSSGMILITHDRYFLERTCDKIFELDDGALY 238
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: ABC (transporter n=1 Tax=Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 TaxID=1797364 RepID=A0A1F3QBF6_9BACT) HSP 1 Score: 220 bits (560), Expect = 8.510e-63 Identity = 112/229 (48.91%), Postives = 153/229 (66.81%), Query Frame = 1
Query: 331 GARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
G + F+++ + +GQ+ GL+ NG GKSTLLK ++GK E D+GTI K VVTY++Q+P F E TV + +Y +NPL+ AVR Y+ A A E D +K D+ EK +A MD++ WD E +++ RL + L+ +Q+ LSGGQ+KRVALA L+ +PD+L+LDEPTNHLDVE IEWLE L R LT + VTHDRYFL++VC EIIE+D KL+ Y
Sbjct: 14 GEKRLFDNISFGLNQGQRTGLIAKNGAGKSTLLKTIMGK-EIADSGTITFRKDIVVTYLDQNPLFDESKTVIETIYNTNNPLLNAVRDYESALTAFEN-----DYNDKTSDQLEKCSAMMDKLEAWDFEAKIHEILQRLKIAFLD-TQISTLSGGQKKRVALAKVLINEPDLLILDEPTNHLDVEMIEWLENYLVSRDLTLLLVTHDRYFLDSVCNEIIEIDNGKLFHY 235
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIN2_KLENI) HSP 1 Score: 222 bits (565), Expect = 1.480e-62 Identity = 122/262 (46.56%), Postives = 173/262 (66.03%), Query Frame = 1
Query: 229 TVDEEEAIRAAALANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAI-EGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLY 1011
+V+ E + A+ + V +L A+GL TFDG R+ F+DL LTV RGQK+GL+G NG GK+TLL+++ G+ E D G+++ K V ++EQ+P +T+ +AV AD PLM AVR Y+ A ++ +G GA D +F+ A MD + WDV + A+Q++ LGV +V +LSGGQ+KRVALAAAL+ KPD+L+LDEPTNH+DVEAIEW+E+LL +LT + VTHDRYFL+ V EI+E+ + Y
Sbjct: 114 SVNTAENVAASLAKSSVVPGEVLLAAEGLVKTFDGDRYLFQDLNLTVARGQKIGLIGHNGSGKTTLLRILAGR-EKPDQGSVQQRKQINVGFLEQEPPMDGEATILEAVISADTPLMAAVRQYEKAAASMAKGNGAAGDK------QFQAAMEKMDALQAWDVASEARQLLDVLGV-GFYDQRVSSLSGGQKKRVALAAALLAKPDLLVLDEPTNHMDVEAIEWMERLLGASTLTVLLVTHDRYFLDRVSNEIVEISAGRAY 367
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: ABC (transporter ATP-binding protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A522EWJ1_9BACT) HSP 1 Score: 209 bits (531), Expect = 1.020e-58 Identity = 110/229 (48.03%), Postives = 148/229 (64.63%), Query Frame = 1
Query: 331 GARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
G + FE + + +GQ++GL+ NG GKSTLLK+V G+ E D G + VTY++Q+P F E TV++A+Y +NP + AVR Y A EA E A D K R EKAT M+R+ W VE+ ++V+ RL + L ++ LSGGQ+KRVALA L+ +P +L+LDEPTNHLDVE IEWLE L + LT + VTHDRYFL++VC EIIE+D KL+ Y
Sbjct: 14 GPKRLFEKISFGLNQGQRIGLIAKNGAGKSTLLKIVTGE-EIADEGKVTFRNDLAVTYLDQNPVFEENDTVEEAIYKTENPTLNAVREYDFALEAFEAAVND-----KTSARLEKATEAMNRLEAWQVESKVKEVLQRLKIAFLH-KKIGLLSGGQKKRVALAKVLINEPQLLVLDEPTNHLDVEMIEWLENYLVNKDLTLLLVTHDRYFLDSVCNEIIEIDNKKLFSY 235 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig936.17414.1 >prot_E_fasciculatus_S2_contig936.17414.1 ID=prot_E_fasciculatus_S2_contig936.17414.1|Name=mRNA_E_fasciculatus_S2_contig936.17414.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=339bp MSTGARLSQAIALVVALVSTPRAVSFVGVGSAARMRNIGFEAKAADSLPQback to top mRNA from alignment at E_fasciculatus_S2_contig936:21338..25344+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig936.17414.1 ID=mRNA_E_fasciculatus_S2_contig936.17414.1|Name=mRNA_E_fasciculatus_S2_contig936.17414.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4007bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig936:21338..25344+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig936:21338..25344+ >mRNA_E_fasciculatus_S2_contig936.17414.1 ID=mRNA_E_fasciculatus_S2_contig936.17414.1|Name=mRNA_E_fasciculatus_S2_contig936.17414.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1017bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig936:21338..25344+ (Ectocarpus fasciculatus EfasUO2)back to top |