mRNA_E_fasciculatus_S2_contig936.17414.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig936.17414.1
Unique NamemRNA_E_fasciculatus_S2_contig936.17414.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: ABC (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JCS1_9PHAE)

HSP 1 Score: 596 bits (1537), Expect = 1.280e-207
Identity = 317/339 (93.51%), Postives = 323/339 (95.28%), Query Frame = 1
Query:    1 MSTGARLSQAIALVVALVSTPRAVSFVGVGSAARMRNIGFEAKAADSLPQGVGERAVRSGIATGRRRRDSRSLAMATVDEEEAIRAAALANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
            M TGARLS A+ LVVALVSTPRAVSFVGVGS ARMRNIGFE+ A D  P  VGER  RSG+ATGRRRR SRSLAMATVDEEEAIRAA+LANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKV LGKKESCD+GTIESPKATVVTYVEQDPEFP GSTVKDAVYGADNPLMRAVRAYQ ATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLE+LLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY
Sbjct:    1 MGTGARLSLAMVLVVALVSTPRAVSFVGVGSTARMRNIGFESSAGDR-PHRVGERPARSGVATGRRRRGSRSLAMATVDEEEAIRAASLANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKV-LGKKESCDSGTIESPKATVVTYVEQDPEFPAGSTVKDAVYGADNPLMRAVRAYQQATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLERLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 337          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: ABC (transporter related n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLI0_9STRA)

HSP 1 Score: 303 bits (776), Expect = 3.270e-94
Identity = 157/256 (61.33%), Postives = 192/256 (75.00%), Query Frame = 1
Query:  250 IRAAALANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
            + A  L+ VVTGT ++L  +GL+NTFDG RFQF+ + LTVCRGQKLGLVG+NGCGKST+LKV +G +E  D+GTI +P  T V YV+Q+P FP G+TV +AVY ++ P+MR +R Y+ AT A+     D      A  RFE+A A M+R   WD E  A Q+MSRL V  L    V  LSGG++KRVALAAALVQ PDVLLLDEPTNHLDVEAIEWLE LL++R+LTFV VTHDR+FLENVCQEI+ELDT  +YRY
Sbjct:    4 VAAEPLSKVVTGTDRLLWVEGLSNTFDGTRFQFKGVDLTVCRGQKLGLVGVNGCGKSTILKV-MGGREDADSGTISAPGRTRVVYVDQEPVFPPGATVLEAVYASEAPMMRTLREYEEATAAVTEHPEDA----AANTRFERAMAAMERENAWDAEGRAAQIMSRLRVDGLRAQSVDRLSGGEKKRVALAAALVQAPDVLLLDEPTNHLDVEAIEWLEDLLSDRALTFVLVTHDRWFLENVCQEILELDTGLMYRY 254          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Abc (transporter atp-binding protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ57_9STRA)

HSP 1 Score: 254 bits (649), Expect = 3.790e-75
Identity = 132/248 (53.23%), Postives = 176/248 (70.97%), Query Frame = 1
Query:  280 TGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYG-ADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQ-EIIELDTAKLYRY 1017
            T    VL   GL+NTFDG R+QF+DL L++ +GQK+GLVG+NGCGKSTLL+ + G  E  ++G IE+ K   V YV+Q+P FP G  VKD ++  + +P M AV AYQ A+EA+          E+A D+F++A+  MD  GGW+ ET A Q+ ++L V+ L+   V  LSGGQRKR+ LA ALV+KPDV+LLDEP+NHLD++AIEWLE  LA R++T + VTHDRYFLE VCQ E+ EL+ A LYR+
Sbjct:   56 TNAETVLWLRGLSNTFDGQRYQFKDLSLSLAKGQKVGLVGVNGCGKSTLLRCI-GGVEKAESGEIETLKGLTVVYVDQEPTFPPGLKVKDVMFSPSGSPAMAAVWAYQKASEALA------TGTEEAYDKFQEASQRMDVTGGWEAETIANQIFTQLNVVDLQDKDVDTLSGGQRKRLGLATALVRKPDVILLDEPSNHLDIDAIEWLEAHLANRAVTAIVVTHDRYFLETVCQSEVWELEDAALYRH 296          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CRB9_9STRA)

HSP 1 Score: 253 bits (646), Expect = 2.420e-72
Identity = 132/248 (53.23%), Postives = 176/248 (70.97%), Query Frame = 1
Query:  280 TGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYG-ADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQ-EIIELDTAKLYRY 1017
            T T  VL   GL+NTFDG R+QF+DL L++ +GQK+GLVG+NGCGKSTLL+ + G  E  ++G IE+ K   V YV+Q+P F  G  VKD ++  + +P M AV AYQ A+EA+          E+A D+F++A+  MD  GGW+ ET A Q+ ++L V+ L+   V  LSGGQRKR+ LA ALV+KPDV+LLDEP+NHLD++AIEWLE  LA R++T + VTHDRYFLE VCQ E+ EL+ A LYR+
Sbjct:  567 TNTETVLWLRGLSNTFDGQRYQFKDLSLSLAKGQKVGLVGVNGCGKSTLLRCI-GGVEKAESGEIETLKGLTVVYVDQEPTFTPGLKVKDVMFSPSGSPAMAAVWAYQKASEALA------TGTEEAYDKFQEASQRMDVTGGWEAETIANQIFTQLNVVDLQDKDVDTLSGGQRKRLGLATALVRKPDVILLDEPSNHLDIDAIEWLEAHLANRAVTAIVVTHDRYFLETVCQSEVWELEDAALYRH 807          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Hypothetical (protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y1P4_HETAK)

HSP 1 Score: 236 bits (601), Expect = 7.890e-68
Identity = 124/242 (51.24%), Postives = 168/242 (69.42%), Query Frame = 1
Query:  295 VLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLL-AERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
            ++  +GL+NTFDG RFQF  + L + +G+KLGL+G+NG GKS+LLK   G+ +  D G I+S K   V YV+Q+P+F +G TVK+AV+ +D P+M A+R Y   +  +E    DP   +KA   FEKAT  ++ +GGW+VE     ++S+L V  L   +V  LSGG+ KR+AL   LV+KPDVLLLDEPTNHLDVEAIEW+E L+ A + +  + VTHDR FLENV  EI+ELD A+LYRY
Sbjct:  113 IIWCEGLSNTFDGERFQFRGIDLGIHKGEKLGLIGLNGAGKSSLLKAFAGELKP-DEGKIDSVKNARVVYVKQEPKFEQGKTVKEAVFESDIPVMVALRKYYELSARLESGDTDPS-TQKA---FEKATEKVESLGGWEVEATVATILSKLNVYHLMDQKVDGLSGGELKRLALGIGLVEKPDVLLLDEPTNHLDVEAIEWVEDLVRANKDMACLVVTHDRLFLENVADEIVELDRAQLYRY 349          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S0UDS7_HEMAN)

HSP 1 Score: 227 bits (578), Expect = 2.330e-67
Identity = 119/249 (47.79%), Postives = 169/249 (67.87%), Query Frame = 1
Query:  283 GTPQVLV-ADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGS---QVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
            G+ QV++ AD L  T+DG ++QF+D    + RG+ +GL+G+NG GKSTLLK+ L ++E  D GT+   K +V  YVEQDP   +  T+++A+Y  ++P+M A+R Y+ A  A+   G D      A  +FE+A+  MD  G W+V+  A + +  L + SL+ S    V  LSGGQRKR+ALA+AL+Q+PDVLLLDEPTNHLDVE IEWLEK L +  ++ + VTHDRYFLE+ C  I+ELD + +YR+
Sbjct:   86 GSEQVVLWADSLAKTYDGTKYQFQDATFVLSRGESVGLIGVNGVGKSTLLKI-LSQQEPPDGGTVTLRKGSVFAYVEQDPLVGQTMTIREALYAGNSPVMTALREYEAAAAALSEGGGDG-----AQKKFERASERMDSQGAWEVQNLADRAVDAL-LPSLKDSLDRPVDKLSGGQRKRLALASALMQRPDVLLLDEPTNHLDVECIEWLEKELRDPKMSLLMVTHDRYFLESTCNYILELDNSNIYRH 327          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Hypothetical (protein n=2 Tax=Lotharella globosa TaxID=91324 RepID=A0A7S3Z6I8_9EUKA)

HSP 1 Score: 222 bits (565), Expect = 1.650e-63
Identity = 115/239 (48.12%), Postives = 158/239 (66.11%), Query Frame = 1
Query:  295 VLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLY 1011
            +L  D L+ T DG  +QF D+ LTV RG+++GL+G NGCGKSTL++++ G  +S D G   + K +VV YV+Q+P  PEG TV DA+Y  D+ + +A++ +Q A+  +       D   +A+   E AT  MDRV  WDVE  A++++  L       S   ++SGGQRKRVALAA+LV KPD+LLLDEPTNHLDV+ IEWLE++L + S   + +THDRYFLE  C +I ELD   LY
Sbjct:    7 LLWGDSLSKTHDGEVYQFRDIDLTVSRGERVGLIGTNGCGKSTLMRILSGT-DSPDKGECRTRKGSVVAYVDQNPMLPEG-TVMDAIYQGDSQVSKALKQFQAASARVS-----MDPTPEALRALEAATEVMDRVDAWDVEAMAKKILQNLLPDMDPMSSTKSMSGGQRKRVALAASLVSKPDLLLLDEPTNHLDVQCIEWLEEVLEDTSSGMILITHDRYFLERTCDKIFELDDGALY 238          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: ABC (transporter n=1 Tax=Bacteroidetes bacterium RIFCSPLOWO2_12_FULL_35_15 TaxID=1797364 RepID=A0A1F3QBF6_9BACT)

HSP 1 Score: 220 bits (560), Expect = 8.510e-63
Identity = 112/229 (48.91%), Postives = 153/229 (66.81%), Query Frame = 1
Query:  331 GARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
            G +  F+++   + +GQ+ GL+  NG GKSTLLK ++GK E  D+GTI   K  VVTY++Q+P F E  TV + +Y  +NPL+ AVR Y+ A  A E      D  +K  D+ EK +A MD++  WD E    +++ RL +  L+ +Q+  LSGGQ+KRVALA  L+ +PD+L+LDEPTNHLDVE IEWLE  L  R LT + VTHDRYFL++VC EIIE+D  KL+ Y
Sbjct:   14 GEKRLFDNISFGLNQGQRTGLIAKNGAGKSTLLKTIMGK-EIADSGTITFRKDIVVTYLDQNPLFDESKTVIETIYNTNNPLLNAVRDYESALTAFEN-----DYNDKTSDQLEKCSAMMDKLEAWDFEAKIHEILQRLKIAFLD-TQISTLSGGQKKRVALAKVLINEPDLLILDEPTNHLDVEMIEWLENYLVSRDLTLLLVTHDRYFLDSVCNEIIEIDNGKLFHY 235          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: Uncharacterized (protein n=1 Tax=Klebsormidium nitens TaxID=105231 RepID=A0A1Y1IIN2_KLENI)

HSP 1 Score: 222 bits (565), Expect = 1.480e-62
Identity = 122/262 (46.56%), Postives = 173/262 (66.03%), Query Frame = 1
Query:  229 TVDEEEAIRAAALANVVTGTPQVLVADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAI-EGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLY 1011
            +V+  E + A+   + V     +L A+GL  TFDG R+ F+DL LTV RGQK+GL+G NG GK+TLL+++ G+ E  D G+++  K   V ++EQ+P     +T+ +AV  AD PLM AVR Y+ A  ++ +G GA  D       +F+ A   MD +  WDV + A+Q++  LGV      +V +LSGGQ+KRVALAAAL+ KPD+L+LDEPTNH+DVEAIEW+E+LL   +LT + VTHDRYFL+ V  EI+E+   + Y
Sbjct:  114 SVNTAENVAASLAKSSVVPGEVLLAAEGLVKTFDGDRYLFQDLNLTVARGQKIGLIGHNGSGKTTLLRILAGR-EKPDQGSVQQRKQINVGFLEQEPPMDGEATILEAVISADTPLMAAVRQYEKAAASMAKGNGAAGDK------QFQAAMEKMDALQAWDVASEARQLLDVLGV-GFYDQRVSSLSGGQKKRVALAAALLAKPDLLVLDEPTNHMDVEAIEWMERLLGASTLTVLLVTHDRYFLDRVSNEIVEISAGRAY 367          
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Match: ABC (transporter ATP-binding protein n=1 Tax=Bacteroidetes bacterium TaxID=1898104 RepID=A0A522EWJ1_9BACT)

HSP 1 Score: 209 bits (531), Expect = 1.020e-58
Identity = 110/229 (48.03%), Postives = 148/229 (64.63%), Query Frame = 1
Query:  331 GARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKKESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQLATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLGVMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWLEKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY 1017
            G +  FE +   + +GQ++GL+  NG GKSTLLK+V G+ E  D G +       VTY++Q+P F E  TV++A+Y  +NP + AVR Y  A EA E A  D     K   R EKAT  M+R+  W VE+  ++V+ RL +  L   ++  LSGGQ+KRVALA  L+ +P +L+LDEPTNHLDVE IEWLE  L  + LT + VTHDRYFL++VC EIIE+D  KL+ Y
Sbjct:   14 GPKRLFEKISFGLNQGQRIGLIAKNGAGKSTLLKIVTGE-EIADEGKVTFRNDLAVTYLDQNPVFEENDTVEEAIYKTENPTLNAVREYDFALEAFEAAVND-----KTSARLEKATEAMNRLEAWQVESKVKEVLQRLKIAFLH-KKIGLLSGGQKKRVALAKVLINEPQLLVLDEPTNHLDVEMIEWLENYLVNKDLTLLLVTHDRYFLDSVCNEIIEIDNKKLFSY 235          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig936.17414.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
ABC1.280e-20793.51protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
ABC3.270e-9461.33transporter related n=1 Tax=Tribonema minus TaxID=... [more]
Abc3.790e-7553.23transporter atp-binding protein n=1 Tax=Nannochlor... [more]
Uncharacterized2.420e-7253.23protein n=1 Tax=Nannochloropsis salina CCMP1776 Ta... [more]
Hypothetical7.890e-6851.24protein n=1 Tax=Heterosigma akashiwo TaxID=2829 Re... [more]
Hypothetical2.330e-6747.79protein (Fragment) n=1 Tax=Hemiselmis andersenii T... [more]
Hypothetical1.650e-6348.12protein n=2 Tax=Lotharella globosa TaxID=91324 Rep... [more]
ABC8.510e-6348.91transporter n=1 Tax=Bacteroidetes bacterium RIFCSP... [more]
Uncharacterized1.480e-6246.56protein n=1 Tax=Klebsormidium nitens TaxID=105231 ... [more]
ABC1.020e-5848.03transporter ATP-binding protein n=1 Tax=Bacteroide... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig936contigE_fasciculatus_S2_contig936:21338..25344 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score509.2
Seed ortholog evalue1.5e-141
Seed eggNOG ortholog2880.D7FZM8
Model size1017
Hectar predicted targeting categorysignal peptide
Exons6
EggNOG free text desc.ATPase activity
EggNOG OGsCOG0488@1,KOG0927@2759
Cds size1017
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig936.17414.1prot_E_fasciculatus_S2_contig936.17414.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig936 21338..25344 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842585.8698764-CDS-E_fasciculatus_S2_contig936:21337..216101696842585.8698764-CDS-E_fasciculatus_S2_contig936:21337..21610Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig936 21338..21610 +
1696842585.8823528-CDS-E_fasciculatus_S2_contig936:22451..226131696842585.8823528-CDS-E_fasciculatus_S2_contig936:22451..22613Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig936 22452..22613 +
1696842585.9011235-CDS-E_fasciculatus_S2_contig936:23049..231951696842585.9011235-CDS-E_fasciculatus_S2_contig936:23049..23195Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig936 23050..23195 +
1696842585.918368-CDS-E_fasciculatus_S2_contig936:23600..237511696842585.918368-CDS-E_fasciculatus_S2_contig936:23600..23751Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig936 23601..23751 +
1696842585.9344587-CDS-E_fasciculatus_S2_contig936:24293..244221696842585.9344587-CDS-E_fasciculatus_S2_contig936:24293..24422Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig936 24294..24422 +
1696842585.94659-CDS-E_fasciculatus_S2_contig936:25188..253441696842585.94659-CDS-E_fasciculatus_S2_contig936:25188..25344Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig936 25189..25344 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig936.17414.1

>prot_E_fasciculatus_S2_contig936.17414.1 ID=prot_E_fasciculatus_S2_contig936.17414.1|Name=mRNA_E_fasciculatus_S2_contig936.17414.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=339bp
MSTGARLSQAIALVVALVSTPRAVSFVGVGSAARMRNIGFEAKAADSLPQ
GVGERAVRSGIATGRRRRDSRSLAMATVDEEEAIRAAALANVVTGTPQVL
VADGLTNTFDGARFQFEDLQLTVCRGQKLGLVGINGCGKSTLLKVVLGKK
ESCDAGTIESPKATVVTYVEQDPEFPEGSTVKDAVYGADNPLMRAVRAYQ
LATEAIEGAGADPDALEKAMDRFEKATATMDRVGGWDVETYAQQVMSRLG
VMSLEGSQVVNLSGGQRKRVALAAALVQKPDVLLLDEPTNHLDVEAIEWL
EKLLAERSLTFVCVTHDRYFLENVCQEIIELDTAKLYRY
back to top

mRNA from alignment at E_fasciculatus_S2_contig936:21338..25344+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig936.17414.1 ID=mRNA_E_fasciculatus_S2_contig936.17414.1|Name=mRNA_E_fasciculatus_S2_contig936.17414.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4007bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig936:21338..25344+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCACAGGCGCCCGATTATCGCAAGCCATAGCGCTGGTGGTGGCCCT GGTCAGCACCCCGAGAGCCGTGTCCTTTGTCGGTGTAGGTTCAGCGGCAC GGATGAGAAATATTGGGTTTGAAGCGAAAGCAGCAGATAGCCTGCCGCAA GGCGTCGGGGAACGTGCTGTGCGTAGCGGCATCGCAACGGGGCGGAGAAG AAGAGACAGCAGAAGTTTGGCCATGGCGACAGTGGACGAGGAGGAGGCGA TTCGGGCTGCTGCTCTTGCCAATGTGAGCGGCATCGGACAGCCATCAGGA TACAGCCACCCACTGAATCATGTGCAACTGCCACGTACACCCCACATTTT TAAACTTGCCGACCGCTGCCTAGGACACACACACACGTGGAGCCAGCGGG CACCACGCAGGGCGCTATACACTATACACCCTCAGTCCATCGGTGCAGTC CGTATCTGGTTTACCTCCCTCTGCTTTTGCAGCGTGGTGTTGGCATCGAG GAAGAGATGATAACTACTGCTGTAGAACATGTTTGTTTTGGGCTTGTCTG ATTGCACCGCATTGCGAACGAACGCGTCAACCACGGCCGGTGTTTTACAT ACACAGACCACGCCAGTTTTGCTACACAACCAACAGCAGGGGACTGCGTG TTCGTGTTGCTGTTTTCTTGGAAGGTACTGTAGTAGCAGCTGTTCGTGGA CAGGGCGGCTAAGCTGTCCACTGCAGGTGTTGGTGTCTGACAACCTTGGC AAACGAAGACGCACTCAAGCACCGGATACGGCAGTTCTCCTTACCAGCAC ACCCTGCGGATATCGTAGGTGACACAGGATATCACACCCCCTGGACCGAT TTTCAAAGTTCGTTTTTCTGTCAGCAGAAAGAGTGGCAGCCCCGAAAACT GCAGCGGCGTTGAAGCCGTCTGGCTGAAAGCTTTCGATAAACATATGGTT TCATTTATGCATCCTCTTCGTCGTACAATTGTAGGGCAATGGAGCTTTGA AAAACGGTCCAAAGGGGGTGTGGTATTTTGTGTCACCTACATATGGTATG CATGTCTGTCTACTGCTGTACCCTCCAGTAACACTTGTTGCGCCTCTGCC CTTCCCCCCGAAAGGTGGTGACAGGCACGCCGCAGGTGTTGGTGGCTGAT GGCCTCACCAACACCTTCGACGGTGCACGATTCCAGTTCGAAGATTTGCA GCTCACGGTGTGCCGGGGTCAGAAGCTGGGTCTGGTGGGAATCAACGGCT GCGGGAAGTCGACGCTCCTCAAGGTGGTCTTTGGTTCGCGTGTCTGTTTC CGTTCTTTTGTCCATCTTTGTCTCTTGTTGTTTCTCTGATCAGATTTCGC TGTTGTCTTTCTTCCAGTTCGTGCCTTACGAGAGGACGCGGTCGGGAGAT TTAGATTCTCGCAACACATGGGTGTGTGGTACGCTTTCGCGACTACATGA GTGTGCGGTACGCTTTGACCCGTTGTTATGAGCACCAGCCAATGTCACCA GCATGGCAGGTGGGGAGACGTGGGAGAGCGAGAGCAAGAAACAAAGCGAC AGCAGTGTTACACGCCTCCTGCAGCCTTCAGCGGAGTCGTCTTGAAAATC TCGCGGACATGAAAATCACGCTTGATGCCACACTCTGCAGGCAGTCAAAC AAACCCCAGCTTTGCGAAAGCGCACTTACGTTACTGGTGGTTTTGGCCCG TCGTGACAAAAGGTGCTGGGAAAGAAGGAGAGTTGTGACGCCGGCACGAT CGAGTCTCCCAAGGCAACTGTCGTGACGTACGTGGAGCAGGACCCCGAGT TTCCGGAGGGATCCACCGTCAAGGATGCCGTCTACGGGGCGGATAACCCT CTGATGCGGTGCGTGGACAATTACGGCGCAACAGTTCAATTGTTGCTCTA CACTCGGGAGGACGCCAATGCCTATAGGGTAGCTTTCCAAACCCTGGTGG AGACGTACACGTGTCGGGAAGGGTGGGCACCCTCTTCCCTTGTCGTGTAC CTAACGACGGTGGAAAATCAGTCGAGGGCCTTTCACCTGGCTCTTGTTTT TCTTCTTTTTTTTGGCTATTTGTCGCTGTGTTTCTGCCGACAACTCAGAG CCGTGCGGGCTTACCACCTGGCTCTTGAATTTTTTTCTCGTGTTTGTCGC TTATTCCCCCGCCAACAACGCAGAAGCCGTGCGGGTCTAATAACCTGGCT CTTCACGTTCGGCTGAAATTGTTTTTTTCGCGTTTATCGCTTTGTTTCTG CCGATACACGCAGCGCCGTGCGGGCCTACCAACTGGCGACGGAGGCGATC GAGGGCGCGGGCGCGGACCCGGACGCGCTGGAGAAGGCGATGGACCGCTT CGAGAAGGCGACGGCAACCATGGACAGGGTCGGGGGATGGGATGTAGAGA CGTACGCTCAGCAGGTGACCCTTTGACCTTTTCACGTGCACCCATCCTGA CGAGGTTTTCCATCGCATAGGTAGGCGTGCAGAATGGGAGGGATGGGGTG CCGTATCGCTCACGAGAGAGAAAGTTATGTTGTACGTGTGCTCGCTTGCT TGCTTGCGTTCAGGTTTGGACGAATATTATTTTATTTTCACCACCCCCCG ACTTGGATTTCCTGCAGCGGTGCTGATGCTGTGTTTTCACTCGTTTCATC AAGCAACCGCCGTCATCGTGCACGCCGCGCCGCTCTTGTTTGTGGGGTTA GAGCGCTAACCCTTCGACGTAGGACAACGCACTGGTCACTCCAATACGAT ACCCCAGACGACGAGATGTACCCGACCACGGGCACGCGACACCCACCACG ATCCCAAGAACTGGAATCCATGCCGTAAAACCAGCCTTGCTTTCATTTTT GCGGTTTGCGGTACGTTACGTACATGGTACGCTTTAAATATCCGCACGCC CGGTCGGTTAGTTACCCGCCGCCCGCCCGCTCCCTCGCCGCCCATCCCCC CCACAGGTCATGTCTCGGTTGGGCGTGATGTCTCTGGAGGGCTCGCAGGT GGTCAACCTGTCGGGAGGGCAGCGCAAGAGGGTCGCGCTGGCGGCAGCCC TGGTGCAGAAGCCGGACGTTCTTCTTCTCGACGAGGTGTGAGCGAACAAC CCCTTGTAGGTGCTGCGACGAGGCCTGCTGTGTTAGGGCGCTTTTTTTTC TCGGACCGCCCTGAGGCTTGGAGTAGAACCAGACGAGGAGCTTCTGCAGG GGGTGGTGCGTGGGTACGCTCCGTGGTTGTGCTGAAGACGTTCGCGTGCT AGGCAGATTGTGCCCAGATATTGCACACCCAGGGGGCGAACCTGCTGCCA CAAGTATGGCAGATCCAAGAAGACTAAACAGGTGTAGATCGTGACCCTAG TTTCCCCAAAACCATACTACTTTACGCAGTTATATCTGCCATAGGGCATT CAACTCCAGCATGTTTCATCCTTGATCTTTGGACATGTTTTGGAGCGTGT TTCGGATTCGTTGTAGACTGCTGAGCCCGTGGGAAGCGGTTCCCAAACCC AAAAGCCGTACCGTAGGTTTTCCCGACTTCCTCTCGGCCTGAGTCCCGAC GAAGTGTAACACACGTAAGTCCCCCAGTGTAAAATGCGTTCAAGGATTAT GTCTGTTCGTCATTTTATCATTGAGAAGCTGGACGGTGGCTTTGCTCTAC TGGAATCAAGGCCCTCTGCCCGACGAAGTTTGCGATACGCACAGACGAAA GGGAACCGTCTGAACTCTTTCTGTTACCGTTGACGCGAGAAAAAAATGTT TTTTCCCATGGCAACAGGCGTTGCTAATGGAGCCCCCCCCTTTCGCCACG TGTGCTTTCTCCTCTGTCGCTCCGTGTGCTTTCTCCCTCCCGTACCATCA GCCAACCAACCATTTGGATGTGGAAGCGATCGAGTGGTTGGAGAAGCTGC TGGCGGAGCGCTCCTTGACCTTCGTGTGCGTGACGCACGACCGCTATTTC TTGGAGAACGTTTGCCAAGAGATCATCGAACTCGACACCGCCAAGCTCTA CAGGTAC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig936:21338..25344+

>mRNA_E_fasciculatus_S2_contig936.17414.1 ID=mRNA_E_fasciculatus_S2_contig936.17414.1|Name=mRNA_E_fasciculatus_S2_contig936.17414.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1017bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig936:21338..25344+ (Ectocarpus fasciculatus EfasUO2)
ATGAGCACAGGCGCCCGATTATCGCAAGCCATAGCGCTGGTGGTGGCCCT
GGTCAGCACCCCGAGAGCCGTGTCCTTTGTCGGTGTAGGTTCAGCGGCAC
GGATGAGAAATATTGGGTTTGAAGCGAAAGCAGCAGATAGCCTGCCGCAA
GGCGTCGGGGAACGTGCTGTGCGTAGCGGCATCGCAACGGGGCGGAGAAG
AAGAGACAGCAGAAGTTTGGCCATGGCGACAGTGGACGAGGAGGAGGCGA
TTCGGGCTGCTGCTCTTGCCAATGTGGTGACAGGCACGCCGCAGGTGTTG
GTGGCTGATGGCCTCACCAACACCTTCGACGGTGCACGATTCCAGTTCGA
AGATTTGCAGCTCACGGTGTGCCGGGGTCAGAAGCTGGGTCTGGTGGGAA
TCAACGGCTGCGGGAAGTCGACGCTCCTCAAGGTGGTGCTGGGAAAGAAG
GAGAGTTGTGACGCCGGCACGATCGAGTCTCCCAAGGCAACTGTCGTGAC
GTACGTGGAGCAGGACCCCGAGTTTCCGGAGGGATCCACCGTCAAGGATG
CCGTCTACGGGGCGGATAACCCTCTGATGCGCGCCGTGCGGGCCTACCAA
CTGGCGACGGAGGCGATCGAGGGCGCGGGCGCGGACCCGGACGCGCTGGA
GAAGGCGATGGACCGCTTCGAGAAGGCGACGGCAACCATGGACAGGGTCG
GGGGATGGGATGTAGAGACGTACGCTCAGCAGGTCATGTCTCGGTTGGGC
GTGATGTCTCTGGAGGGCTCGCAGGTGGTCAACCTGTCGGGAGGGCAGCG
CAAGAGGGTCGCGCTGGCGGCAGCCCTGGTGCAGAAGCCGGACGTTCTTC
TTCTCGACGAGCCAACCAACCATTTGGATGTGGAAGCGATCGAGTGGTTG
GAGAAGCTGCTGGCGGAGCGCTCCTTGACCTTCGTGTGCGTGACGCACGA
CCGCTATTTCTTGGAGAACGTTTGCCAAGAGATCATCGAACTCGACACCG
CCAAGCTCTACAGGTAC
back to top