mRNA_E_fasciculatus_S2_contig932.17380.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig932.17380.1
Unique NamemRNA_E_fasciculatus_S2_contig932.17380.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig932.17380.1 vs.
Match: EsV-1-7 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZC4_ECTSI)

HSP 1 Score: 199 bits (507), Expect = 2.840e-51
Identity = 513/638 (80.41%), Postives = 538/638 (84.33%), Query Frame = 1 
Query:   55 LVNLSHKACAQPGCTTLPTYGYESARGRKNAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTAASGRAEYCFAHQLEGMEDVRNKKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDVHYNXXXXXXXXXXXXXXXGYGKKEASFCKQHAKEGMVCLDGRVCQHQGCITKACYGTHDSNRREFCSLHAEKEMVIYSRSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVDLSKNRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKADRVCDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSVNRKSCLHQNCTKSPSYAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDKPWMVRVIRKSGSRSGGSMPEVKEAGEGVKREVCDGDAVLEAGVDEHIVAERGPEVAPLTLDDCSSARSPPVLASPFMGCRKRRKMMDTTTTGPTAGLL 1968
            ++ ++++ CA P C   PTYG                                         + ASGR EYCFAHQLEGMEDVRNKK XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX VHYNXXXXXXXXXXXXXXX    KEA F         VCLD +VCQHQGC TKACYGT+ SN+++FC  HAEK+MV+ +  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVD+SK+RXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX  K++RVCDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSV RKSCLHQNCTKSPS  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DKPWMVRV RK GSR+GGSMPEVKEAGE VK E+CDGD   EAG+DEH VAER PEVAP+ LD C S RS PVL  PFMGC KRRKMMD T+T PT G+L
Sbjct:    1 MICVTNRRCAHPACLKQPTYG-----------------------------------------STASGRPEYCFAHQLEGMEDVRNKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHYNXXXXXXXXXXXXXXXXXEMKEALFXXXXXXXXXVCLDTKVCQHQGCNTKACYGTYGSNQKKFCGRHAEKDMVMCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMVDISKSRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNKSERVCDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXRSVYRKSCLHQNCTKSPSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSDKPWMVRVFRKFGSRNGGSMPEVKEAGENVKAELCDGDVASEAGIDEHDVAERRPEVAPVPLDGCRSTRSNPVLTPPFMGCGKRRKMMDATSTLPTTGIL 597
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BLAST of mRNA_E_fasciculatus_S2_contig932.17380.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBR8_9PHAE)

HSP 1 Score: 116 bits (291), Expect = 7.360e-23
Identity = 63/100 (63.00%), Postives = 68/100 (68.00%), Query Frame = 1 
Query: 1669 DKPWMVRVIRKSGSRSGGSMPEVKEAGEGVKREVCDGDAVLEAGVDEHIVAERGPEVAPLTLDDCSSARSPPVLASPFMGCRKRRKMMDTTTTGPTAGLL 1968
            DKPWMVR++RK GSR+GGSMPE   AGE VKRE+CDGDAV EAG+DEH VAERG              R      SPFMGCRKRRKMMD  TTG T G L
Sbjct: 1308 DKPWMVRIVRKLGSRNGGSMPEATGAGECVKRELCDGDAVSEAGMDEHDVAERG--------------RGTSASVSPFMGCRKRRKMMDALTTGATTGKL 1393
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BLAST of mRNA_E_fasciculatus_S2_contig932.17380.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZC3_ECTSI)

HSP 1 Score: 93.2 bits (230), Expect = 1.400e-19
Identity = 46/60 (76.67%), Postives = 50/60 (83.33%), Query Frame = -2 
Query: 1548 MDPPLREPLLRMTRTIQGLSPACRVQTSAFEVPLMPKLGSKVHPGELHLSRRMWTIPSVA 1727
            MDP LR+P LR  RTIQGLS ACRVQTSAFEV   PK+G +V PGELHLSRR+WTIPSVA
Sbjct:    1 MDPSLRDPNLRTIRTIQGLSLACRVQTSAFEVAQTPKIGRRVQPGELHLSRRIWTIPSVA 60
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig932.17380.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
EsV-1-72.840e-5180.41n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FZC4_ECTSI[more]
Uncharacterized7.360e-2363.00protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.400e-1976.67protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig932contigE_fasciculatus_S2_contig932:5390..7861 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score243.8
Seed ortholog evalue2e-61
Seed eggNOG ortholog2880.D7FZC4
Model size2472
Hectar predicted targeting categoryother localisation
Exons1
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size1794
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842582.3203602-UTR-E_fasciculatus_S2_contig932:5389..55661696842582.3203602-UTR-E_fasciculatus_S2_contig932:5389..5566Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig932 5390..5566 +
1696842582.3442547-UTR-E_fasciculatus_S2_contig932:7360..78611696842582.3442547-UTR-E_fasciculatus_S2_contig932:7360..7861Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig932 7361..7861 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842582.3327284-CDS-E_fasciculatus_S2_contig932:5566..73601696842582.3327284-CDS-E_fasciculatus_S2_contig932:5566..7360Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig932 5567..7360 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig932.17380.1prot_E_fasciculatus_S2_contig932.17380.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig932 5567..7360 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig932.17380.1

>prot_E_fasciculatus_S2_contig932.17380.1 ID=prot_E_fasciculatus_S2_contig932.17380.1|Name=mRNA_E_fasciculatus_S2_contig932.17380.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=598bp
MVCVTNRRCAHPSCLKQPTYGTAASGRAEYCFAHQLEGMEDVRNKKRCRH
PGCGKHPRRGVAGSKMPEFCAKHAPEGFVDVHYNCAHPGCPKQPSYGIAG
YGKKEASFCKQHAKEGMVCLDGRVCQHQGCITKACYGTHDSNRREFCSLH
AEKEMVIYSRSCAKPGCTAARSYGAAGSKMPRFCPQHASEGMVDLSKNRC
GQPGCSLVAAFSVAGKSTRDFCRRHAKEGMIRVPKNKADRVCDRAGCIGR
AHWGVPGSKDPKFCRQHAEEGMRSVNRKSCLHQNCTKSPSYAAQGSKTAQ
FCERHRGEEMINVLNRRCVYPGCSGSAGFRVVGKRKAEFCPTHAGDGMED
MRKKTCVYPDCFARAKFGKAGTEKAEYCKEHAGKGAVDVVGKRCVHPGCT
KRPSYGPVGSKRPEFCGPHATEGMVAVRGLRCSYPLCDEWPSFGRAGNKK
GEFCGRHATEGMVHIRRERCSSPGCTLLPSFGISGTSKAEVCTRHAGDKP
WMVRVIRKSGSRSGGSMPEVKEAGEGVKREVCDGDAVLEAGVDEHIVAER
GPEVAPLTLDDCSSARSPPVLASPFMGCRKRRKMMDTTTTGPTAGLL*
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mRNA from alignment at E_fasciculatus_S2_contig932:5390..7861+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig932.17380.1 ID=mRNA_E_fasciculatus_S2_contig932.17380.1|Name=mRNA_E_fasciculatus_S2_contig932.17380.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2472bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig932:5390..7861+ (Ectocarpus fasciculatus EfasUO2)
GGCGTGGTCGGCACCAGGAAGAGAATCTTCTGCGGCACGCACAAAACGGA
AGGGTTGGTCAACCTTTCCCACAAGGCGTGTGCCCAGCCAGGCTGTACTA
CACTGCCAACGTATGGTTACGAGTCAGCTCGTGGACGCAAGAACGCGGAG
TACTGCGCAAGGCATGCTAAGGAGGGGATGGTTTGTGTCACTAACAGGAG
ATGTGCCCATCCCTCCTGTCTCAAGCAGCCCACATACGGCACGGCAGCCA
GTGGCAGGGCCGAGTATTGCTTTGCTCACCAATTGGAAGGGATGGAAGAC
GTACGGAACAAGAAGAGGTGTCGTCATCCAGGTTGTGGCAAGCACCCCAG
ACGCGGTGTTGCCGGCAGCAAGATGCCTGAATTCTGTGCAAAGCACGCTC
CTGAGGGGTTTGTCGACGTGCACTACAATTGCGCGCACCCAGGTTGTCCG
AAACAACCAAGCTATGGTATTGCCGGTTACGGAAAGAAGGAAGCATCGTT
TTGTAAGCAACATGCCAAGGAAGGGATGGTCTGTTTGGATGGTAGGGTTT
GCCAACACCAAGGTTGCATCACGAAGGCCTGCTATGGGACTCATGATAGC
AACCGGAGGGAGTTCTGTAGTCTACACGCGGAGAAGGAGATGGTAATTTA
CTCAAGGAGTTGCGCCAAGCCTGGTTGCACCGCAGCGAGGTCGTACGGAG
CAGCTGGCAGCAAAATGCCGCGATTCTGCCCTCAACACGCAAGTGAGGGG
ATGGTCGATCTCTCCAAGAACAGGTGTGGTCAACCTGGATGTTCTCTCGT
GGCGGCGTTCAGCGTAGCTGGCAAGTCAACGAGGGATTTTTGCCGTCGGC
ACGCGAAGGAGGGAATGATACGAGTCCCCAAGAATAAGGCCGACAGGGTA
TGCGACCGCGCCGGTTGCATAGGTCGTGCACACTGGGGAGTTCCTGGCAG
CAAAGACCCAAAGTTTTGCCGTCAGCACGCGGAGGAAGGAATGAGGAGCG
TTAACCGCAAGAGCTGCCTCCACCAAAACTGCACGAAGTCCCCGTCGTAT
GCCGCACAAGGCAGCAAAACGGCTCAATTCTGCGAGAGACACCGCGGGGA
AGAAATGATCAATGTTTTGAACAGAAGGTGCGTCTATCCAGGTTGCTCCG
GATCCGCGGGCTTCAGGGTGGTTGGAAAGAGAAAGGCTGAGTTTTGTCCC
ACCCACGCGGGGGACGGGATGGAGGACATGAGAAAGAAGACGTGTGTTTA
CCCGGACTGTTTCGCACGAGCAAAGTTCGGCAAGGCAGGTACCGAGAAGG
CGGAATATTGCAAGGAGCATGCTGGGAAGGGAGCGGTCGACGTTGTCGGT
AAACGATGCGTTCACCCGGGATGTACCAAACGGCCATCCTATGGCCCGGT
TGGGAGTAAACGGCCAGAGTTCTGTGGGCCGCATGCGACAGAAGGGATGG
TGGCGGTCAGAGGGCTGAGGTGCAGTTACCCATTGTGCGATGAATGGCCG
TCGTTCGGAAGGGCAGGCAACAAGAAGGGCGAGTTTTGTGGGCGTCACGC
TACCGAAGGAATGGTCCACATCCGTCGGGAGAGATGCAGCTCGCCTGGGT
GCACCTTGCTGCCGAGTTTCGGCATTAGTGGTACCTCGAAGGCGGAGGTC
TGCACCCGGCACGCCGGCGACAAACCCTGGATGGTTCGAGTCATCCGCAA
AAGTGGCTCCCGCAGTGGTGGGTCCATGCCGGAAGTCAAGGAAGCCGGAG
AAGGTGTCAAGAGAGAAGTCTGTGACGGGGATGCTGTCTTGGAGGCAGGC
GTCGACGAGCACATTGTGGCGGAGCGAGGGCCTGAGGTAGCACCTCTGAC
TCTGGACGACTGCAGTTCTGCACGAAGCCCCCCAGTTTTGGCTTCACCCT
TCATGGGCTGCAGAAAGAGACGAAAGATGATGGACACTACGACGACGGGA
CCAACGGCAGGATTATTGTAGGTACGCTCGAGGAGTACATGTTCGCGAAG
TCCACTGCGCTGCGGCGCAATGTTGGGTGCAGTCACTCAGGCAGCGCCAG
CTCTGTTGTATGTACCTCTTGTGTTTGATAGCTGAAACCAATTCGGATTG
GAATAGTTTTTTCTGCTGTTGAGAAATCCATATTTCCGTAGTAGGCCAGC
GCGTTTCGAGTTCTGGGGGGCGCCGGTGACTCCCAGGGAGGGTGTCCACT
ACATACCAGCAGTGCATTGTACGCATATGTATCGTCTTGCCAACCTCTGT
CTCAATCAACCCGAATTCGTGCTCTGAGCGGAAACTCAAAGTGAGGGATG
GGGTGACCAGAGTAGCAGGGCATGCACAACAGGTCGCACTACAGTAGACC
CTCGCACACAAGTGTACAGAGGTGTACCGCGTACATATATCATCAATGAG
GGTGCGTATGCATAGATAATAATGTGTGTTGTCTCCCAGCTGGTGATGAT
GACAGCTAACTGAAAATTCGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig932:5390..7861+

>mRNA_E_fasciculatus_S2_contig932.17380.1 ID=mRNA_E_fasciculatus_S2_contig932.17380.1|Name=mRNA_E_fasciculatus_S2_contig932.17380.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1794bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig932:5390..7861+ (Ectocarpus fasciculatus EfasUO2)
ATGGTTTGTGTCACTAACAGGAGATGTGCCCATCCCTCCTGTCTCAAGCA
GCCCACATACGGCACGGCAGCCAGTGGCAGGGCCGAGTATTGCTTTGCTC
ACCAATTGGAAGGGATGGAAGACGTACGGAACAAGAAGAGGTGTCGTCAT
CCAGGTTGTGGCAAGCACCCCAGACGCGGTGTTGCCGGCAGCAAGATGCC
TGAATTCTGTGCAAAGCACGCTCCTGAGGGGTTTGTCGACGTGCACTACA
ATTGCGCGCACCCAGGTTGTCCGAAACAACCAAGCTATGGTATTGCCGGT
TACGGAAAGAAGGAAGCATCGTTTTGTAAGCAACATGCCAAGGAAGGGAT
GGTCTGTTTGGATGGTAGGGTTTGCCAACACCAAGGTTGCATCACGAAGG
CCTGCTATGGGACTCATGATAGCAACCGGAGGGAGTTCTGTAGTCTACAC
GCGGAGAAGGAGATGGTAATTTACTCAAGGAGTTGCGCCAAGCCTGGTTG
CACCGCAGCGAGGTCGTACGGAGCAGCTGGCAGCAAAATGCCGCGATTCT
GCCCTCAACACGCAAGTGAGGGGATGGTCGATCTCTCCAAGAACAGGTGT
GGTCAACCTGGATGTTCTCTCGTGGCGGCGTTCAGCGTAGCTGGCAAGTC
AACGAGGGATTTTTGCCGTCGGCACGCGAAGGAGGGAATGATACGAGTCC
CCAAGAATAAGGCCGACAGGGTATGCGACCGCGCCGGTTGCATAGGTCGT
GCACACTGGGGAGTTCCTGGCAGCAAAGACCCAAAGTTTTGCCGTCAGCA
CGCGGAGGAAGGAATGAGGAGCGTTAACCGCAAGAGCTGCCTCCACCAAA
ACTGCACGAAGTCCCCGTCGTATGCCGCACAAGGCAGCAAAACGGCTCAA
TTCTGCGAGAGACACCGCGGGGAAGAAATGATCAATGTTTTGAACAGAAG
GTGCGTCTATCCAGGTTGCTCCGGATCCGCGGGCTTCAGGGTGGTTGGAA
AGAGAAAGGCTGAGTTTTGTCCCACCCACGCGGGGGACGGGATGGAGGAC
ATGAGAAAGAAGACGTGTGTTTACCCGGACTGTTTCGCACGAGCAAAGTT
CGGCAAGGCAGGTACCGAGAAGGCGGAATATTGCAAGGAGCATGCTGGGA
AGGGAGCGGTCGACGTTGTCGGTAAACGATGCGTTCACCCGGGATGTACC
AAACGGCCATCCTATGGCCCGGTTGGGAGTAAACGGCCAGAGTTCTGTGG
GCCGCATGCGACAGAAGGGATGGTGGCGGTCAGAGGGCTGAGGTGCAGTT
ACCCATTGTGCGATGAATGGCCGTCGTTCGGAAGGGCAGGCAACAAGAAG
GGCGAGTTTTGTGGGCGTCACGCTACCGAAGGAATGGTCCACATCCGTCG
GGAGAGATGCAGCTCGCCTGGGTGCACCTTGCTGCCGAGTTTCGGCATTA
GTGGTACCTCGAAGGCGGAGGTCTGCACCCGGCACGCCGGCGACAAACCC
TGGATGGTTCGAGTCATCCGCAAAAGTGGCTCCCGCAGTGGTGGGTCCAT
GCCGGAAGTCAAGGAAGCCGGAGAAGGTGTCAAGAGAGAAGTCTGTGACG
GGGATGCTGTCTTGGAGGCAGGCGTCGACGAGCACATTGTGGCGGAGCGA
GGGCCTGAGGTAGCACCTCTGACTCTGGACGACTGCAGTTCTGCACGAAG
CCCCCCAGTTTTGGCTTCACCCTTCATGGGCTGCAGAAAGAGACGAAAGA
TGATGGACACTACGACGACGGGACCAACGGCAGGATTATTGTAG
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