mRNA_E_fasciculatus_S2_contig9314.17376.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9314.17376.1
Unique NamemRNA_E_fasciculatus_S2_contig9314.17376.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZS1_ECTSI)

HSP 1 Score: 367 bits (942), Expect = 3.110e-122
Identity = 185/195 (94.87%), Postives = 190/195 (97.44%), Query Frame = 3
Query:  252 MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDSGEMKKET-LPKPEAGEKIRDKDPTAAPALDSK 833
            MRVVVQRVKRASVAVE+KDGDGTSSEPS+VVSEIGKGILCLVGVK+GDEKGHAEW+CKQIVTAKLFEGMSEANADKRWRSN+KQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPP EAREFY  FVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDSGEMK ET LPKPEAGEKIRDKDPTAAPALDSK
Sbjct:    1 MRVVVQRVKRASVAVEHKDGDGTSSEPSSVVSEIGKGILCLVGVKDGDEKGHAEWLCKQIVTAKLFEGMSEANADKRWRSNVKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPAEAREFYSRFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDSGEMKNETPLPKPEAGEKIRDKDPTAAPALDSK 195          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KFD1_9PHAE)

HSP 1 Score: 179 bits (454), Expect = 1.420e-50
Identity = 87/94 (92.55%), Postives = 91/94 (96.81%), Query Frame = 3
Query:  252 MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQ 533
            MRVVVQRVKRASV VE+KD DGTS EPSTVVSEIGKGILCLVGVKEGDE+GHAEWICKQIVTAKLFEGMSEANADK+WRSN+KQNGFEILLVSQ
Sbjct:    1 MRVVVQRVKRASVVVEHKDADGTSLEPSTVVSEIGKGILCLVGVKEGDERGHAEWICKQIVTAKLFEGMSEANADKKWRSNVKQNGFEILLVSQ 94          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A6U2C6S1_9CHLO)

HSP 1 Score: 152 bits (384), Expect = 9.390e-40
Identity = 80/166 (48.19%), Postives = 106/166 (63.86%), Query Frame = 3
Query:  243 RATMRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDS 740
            R  MR +V RV+ ASV VE K           +VS IG G+LCLVG+K+ D +  AE++CK+++  ++F    +A A   W  ++     EIL VSQFTL GR+    + DF+ SMPP +AREFY +FVDMV+  + PE V DGVFGA M V+ VNDGPVT I+DS
Sbjct:    1 RGAMRAIVTRVRSASVEVEGK-----------IVSSIGPGLLCLVGIKDSDRRKDAEYVCKKLLKTRIFAKEDQARAS--WDEDVVTRKGEILCVSQFTLYGRLKKGTRPDFSKSMPPAQAREFYDSFVDMVRQEYEPERVHDGVFGAMMGVASVNDGPVTFIIDS 153          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=3 Tax=Phytophthora TaxID=4783 RepID=G4ZH98_PHYSP)

HSP 1 Score: 149 bits (375), Expect = 1.070e-38
Identity = 79/167 (47.31%), Postives = 109/167 (65.27%), Query Frame = 3
Query:  252 MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDSGEMK 752
            M+V++QRV  ASV VE K           VV EIGKG+LC VG+   D +  AEW C++++ A L+   S    D+ W++++K NG+E+L+VSQFTL+G+     K DF  +M P  A+EFY AF D V+  H PE V +GVFGA MEVS+VNDGPVT+ ++S + K
Sbjct:    1 MKVLMQRVTSASVRVEGK-----------VVGEIGKGLLCFVGIGHDDTEDDAEWCCRRLLNAHLWPDES----DRAWKTSLKSNGYEVLVVSQFTLHGQFAGN-KPDFHLAMGPGPAKEFYDAFCDRVRREHVPEKVAEGVFGAYMEVSIVNDGPVTMQINSKDRK 151          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZPR4_HAELA)

HSP 1 Score: 147 bits (371), Expect = 2.290e-37
Identity = 82/164 (50.00%), Postives = 105/164 (64.02%), Query Frame = 3
Query:  249 TMRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDS 740
            +MR V+QRVK ASV VE K           +VS IG G+LCLVG+K  D    A +I K+I+  + F G  E    + W  ++   G+E+LLVSQFTL GR+  K K DFT +M    A+E + AFV  V+ AH PELVKDGVFGA M+V+LVNDGPVT ++DS
Sbjct:   62 SMRAVIQRVKSASVEVEGK-----------IVSSIGPGLLCLVGLKTTDTAKDAAYITKKILKTRAFNG--EGEDGRSWDKDVISCGYEVLLVSQFTLYGRL-QKAKPDFTKAMSTAPAKEMWAAFVAQVQEAHKPELVKDGVFGAMMDVALVNDGPVTFLLDS 211          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TKM7_CHLSO)

HSP 1 Score: 144 bits (364), Expect = 6.770e-37
Identity = 75/171 (43.86%), Postives = 112/171 (65.50%), Query Frame = 3
Query:  252 MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDSGEMKKETL 764
            MR VVQRV  ASV V   DG+        +V +IG G+LCLVG+++ D    A++I ++I+  +L+      +  K W  N++Q G+ +L VSQFTL GR+   GK D++ +MPP +ARE Y AF+D ++ ++ P+ ++DGVFGA M+VSLVNDGPVT ++DS +   + L
Sbjct:    1 MRAVVQRVTSASVEV---DGE--------IVGKIGPGLLCLVGLRDTDTDKDADYIARKILGLRLWPS---PDGSKAWDQNVQQRGYGVLCVSQFTLFGRLKGAGKPDYSKAMPPQQAREAYAAFLDRLRQSYEPDRIQDGVFGAMMQVSLVNDGPVTFLLDSADPNNQAL 157          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QST5_DUNTE)

HSP 1 Score: 144 bits (362), Expect = 7.780e-37
Identity = 80/164 (48.78%), Postives = 106/164 (64.63%), Query Frame = 3
Query:  252 MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQ-NGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDS 740
            MR VVQRVK ASV V  +            VS I  G+LCL+G++ GD K  A++ICK+I+  +++         K+W +++   +G EIL+VSQFTL GR   K K DF+ +MPP EAREFY AFV+ V+  +  E VKDGVFGA M+VSL NDGPVT ++DS
Sbjct:    1 MRAVVQRVKNASVQVNGEQ-----------VSSINAGLLCLIGLRAGDTKKDADFICKKILKTRVWPNKETG---KQWDTDVTDGDGREILMVSQFTLYGRT-KKSKPDFSHAMPPQEAREFYQAFVENVRQEYIAEKVKDGVFGAMMDVSLTNDGPVTFVIDS 149          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BDE5_PYTIN)

HSP 1 Score: 142 bits (358), Expect = 2.700e-36
Identity = 80/167 (47.90%), Postives = 109/167 (65.27%), Query Frame = 3
Query:  252 MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDSGEMK 752
            MRVV+QRV  ASV V   DG+        VV +IGKG++CLVG+   D +  AE+ C++++ A+L+        D  W+S++  NG+E+LLVSQFTL G      K DF  +M P  A+EFY AF D V++AH+ + V +GVFGA MEVSLVNDGPVT+ +DS + K
Sbjct:    1 MRVVLQRVTGASVRV---DGE--------VVGQIGKGLVCLVGITREDTEEDAEFCCRRLLNARLWPD----EKDTAWKSSVVSNGYEVLLVSQFTLYGYF-QGNKPDFHLAMAPAPAKEFYHAFCDRVRAAHSADKVAEGVFGAMMEVSLVNDGPVTMTIDSRDRK 151          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=2 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XKL3_9CHLO)

HSP 1 Score: 142 bits (358), Expect = 2.870e-36
Identity = 76/163 (46.63%), Postives = 108/163 (66.26%), Query Frame = 3
Query:  252 MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDS 740
            MR VVQRV+ A V V+            ++VS IG G+LCL+GVK+ D+   AE+ICK+I+  ++F   ++ +    W +++  +  E+LLVSQFTL  R+  K + DF+ +MPPT+A+E Y  FV+MV+  + PE VKDGVFGA M V+L NDGPVT I+DS
Sbjct:    1 MRAVVQRVRSAHVEVDG-----------SIVSSIGPGLLCLIGVKDTDQGADAEYICKKILKTRVFP-QNDDSKRAAWDNDVVSHNGEVLLVSQFTLYARL-KKPRPDFSKAMPPTQAKELYSQFVEMVQRDYIPEKVKDGVFGAMMNVTLENDGPVTFILDS 150          
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Match: D-aminoacyl-tRNA (deacylase n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V4R2_9STRA)

HSP 1 Score: 142 bits (359), Expect = 3.250e-36
Identity = 78/165 (47.27%), Postives = 102/165 (61.82%), Query Frame = 3
Query:  252 MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEKGHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGRVCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVSLVNDGPVTVIVDSGE 746
            M+VV+QRVK ASV+V +             +S IGKG LCLVG+ E D    A+W+ KQI++ KLF G       K W+ NI Q   E+L+VSQFTL G+V  +GK+DF  +M P  ARE+Y  F+D +K       V DG FG  MEVSL+NDGP+T+ +DS E
Sbjct:    1 MKVVIQRVKSASVSVNDSQ-----------ISCIGKGFLCLVGIHETDGPADADWMIKQIISCKLFPGED----GKPWKRNISQIEGELLMVSQFTLYGKVYKRGKMDFHHAMSPDAAREYYSRFLDSLKEKTITGKVYDGAFGEIMEVSLLNDGPITITLDSFE 150          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9314.17376.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D-aminoacyl-tRNA3.110e-12294.87deacylase n=1 Tax=Ectocarpus siliculosus TaxID=288... [more]
Uncharacterized1.420e-5092.55protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
D-aminoacyl-tRNA9.390e-4048.19deacylase n=1 Tax=Chlamydomonas euryale TaxID=1486... [more]
D-aminoacyl-tRNA1.070e-3847.31deacylase n=3 Tax=Phytophthora TaxID=4783 RepID=G4... [more]
D-aminoacyl-tRNA2.290e-3750.00deacylase n=1 Tax=Haematococcus lacustris TaxID=44... [more]
D-aminoacyl-tRNA6.770e-3743.86deacylase n=1 Tax=Chlorella sorokiniana TaxID=3076... [more]
D-aminoacyl-tRNA7.780e-3748.78deacylase n=1 Tax=Dunaliella tertiolecta TaxID=304... [more]
D-aminoacyl-tRNA2.700e-3647.90deacylase n=1 Tax=Pythium insidiosum TaxID=114742 ... [more]
D-aminoacyl-tRNA2.870e-3646.63deacylase n=2 Tax=Chlamydomonas eustigma TaxID=115... [more]
D-aminoacyl-tRNA3.250e-3647.27deacylase n=1 Tax=Fibrocapsa japonica TaxID=94617 ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9314contigE_fasciculatus_S2_contig9314:2316..5547 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score366.3
Seed ortholog evalue8.8e-99
Seed eggNOG ortholog2880.D7FZS1
Preferred nameDTD1
Model size1727
KEGG koko:K07560,ko:K13117
KEGG ModuleM00355
Hectar predicted targeting categoryother localisation
GOsGO:0002161,GO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006139,GO:0006399,GO:0006450,GO:0006520,GO:0006551,GO:0006552,GO:0006570,GO:0006572,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009056,GO:0009063,GO:0009072,GO:0009074,GO:0009081,GO:0009083,GO:0009987,GO:0016054,GO:0016070,GO:0016787,GO:0016788,GO:0019439,GO:0019478,GO:0019752,GO:0034641,GO:0034660,GO:0043170,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044281,GO:0044282,GO:0044424,GO:0044464,GO:0046395,GO:0046416,GO:0046483,GO:0051499,GO:0051500,GO:0052689,GO:0065007,GO:0065008,GO:0071704,GO:0090304,GO:0097358,GO:0106026,GO:0106074,GO:0140098,GO:0140101,GO:1900828,GO:1900829,GO:1900831,GO:1900832,GO:1901360,GO:1901361,GO:1901564,GO:1901565,GO:1901575,GO:1901605,GO:1901606
Exons3
EggNOG free text desc.D-tyrosyl-tRNA(Tyr) deacylase activity
EggNOG OGsCOG1490@1,KOG3323@2759
EC3.6.4.13
Cds size585
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00002,ko01000,ko03016,ko03041
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842581.9450169-UTR-E_fasciculatus_S2_contig9314:2315..31961696842581.9450169-UTR-E_fasciculatus_S2_contig9314:2315..3196Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9314 2316..3196 -
1696842581.97205-UTR-E_fasciculatus_S2_contig9314:3742..37521696842581.97205-UTR-E_fasciculatus_S2_contig9314:3742..3752Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9314 3743..3752 -
1696842582.0024688-UTR-E_fasciculatus_S2_contig9314:5296..55471696842582.0024688-UTR-E_fasciculatus_S2_contig9314:5296..5547Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9314 5297..5547 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842581.982581-CDS-E_fasciculatus_S2_contig9314:3752..40551696842581.982581-CDS-E_fasciculatus_S2_contig9314:3752..4055Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9314 3753..4055 -
1696842581.9925847-CDS-E_fasciculatus_S2_contig9314:5014..52961696842581.9925847-CDS-E_fasciculatus_S2_contig9314:5014..5296Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9314 5015..5296 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9314.17376.1prot_E_fasciculatus_S2_contig9314.17376.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9314 3753..5296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9314.17376.1

>prot_E_fasciculatus_S2_contig9314.17376.1 ID=prot_E_fasciculatus_S2_contig9314.17376.1|Name=mRNA_E_fasciculatus_S2_contig9314.17376.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=195bp
MRVVVQRVKRASVAVENKDGDGTSSEPSTVVSEIGKGILCLVGVKEGDEK
GHAEWICKQIVTAKLFEGMSEANADKRWRSNIKQNGFEILLVSQFTLNGR
VCSKGKVDFTGSMPPTEAREFYGAFVDMVKSAHAPELVKDGVFGAKMEVS
LVNDGPVTVIVDSGEMKKETLPKPEAGEKIRDKDPTAAPALDSK*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9314:2316..5547-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9314.17376.1 ID=mRNA_E_fasciculatus_S2_contig9314.17376.1|Name=mRNA_E_fasciculatus_S2_contig9314.17376.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3232bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9314:2316..5547- (Ectocarpus fasciculatus EfasUO2)
GTGGTGTATTCGGACCCCAAGCACTTACGACTGGACAAGCTCGCGGCTGG ACATTTGGTGGTAGCCCCCATGTTATGTGTACGAGACGTTATTACAGGCA ATGTCCGTCACCCTTGTACATTGTTTGGGTCAAGTACGAGACATATTAAA GTGTTCCATTCAGTGAAGCAAGCCCCAAAACATTTCCACCCGATGCACGG ACTGCCGTATGTGCTTTCGTCTAGATCTCTCGCGTAGTCAAGAGAGCGAC GATGCGCGTCGTTGTCCAGAGAGTGAAGCGAGCAAGCGTGGCGGTGGAGA ACAAAGATGGAGACGGCACGTCCTCGGAACCATCGACCGTTGTCAGCGAA ATTGGCAAAGGAATCCTCTGTCTCGTCGGCGTCAAAGAAGGGGACGAGAA GGGGCATGCAGAGTGGATCTGCAAGCAGATCGTGACCGCAAAGCTGTTCG AGGGAATGTCTGAGGCGAACGCAGACAAGAGATGGCGGTCCAACATCAAG CAGAACGGCTTCGAAATACTGTTGGTGTCACAGGCGAGATACTAAAGCTA TGCATGTTGTGAACACACAACCGGTCAGTGTAGCCTAGTGCTTGGTCGCC AATGCACGTCGTTCGGTTCAGCGTGTTAGCATGGAAATTTCGTTACTTAC GCATCTGGTTCATGTACCACAGACGTGGTGCTGAATATTGGTCAGAACAG GGTACTAACCTCATGTAAGAATAACAGTCACGGTGCCATTCGGCATTGAA GCTGTGGCAAGTGACACCAACACGCAAAAAGCCATCCTGTCATCCATGTT GTTCTAGTTGATAGTCGCAGAGCGGGAAACACATCGTTCTCACGCCTGTG TTCGCACAATTTACCTGTACGTAAAGTGTTGGGAAAATGTGACATAGATT GACCAAGGACCGTGTGCACAGCTAGTGTCACCGCGCTAACTCCGAAGTTG TCCATCCACGGCGAAATCGGTATTGGCATCGATATTTTCGCGGACAACAC AGAAGGGCGCACAAAAAAACTGAAAATCGAAGTGAAAATCGAAGTGCTTC TTACGTTGGAACACTGCCGGTCTGCGATGAGACAGAACGCGCCAATCAAA TGTGTCAGTAGTTAAGAAATTGAGGGTTCGATTTGCACGAAAATAGCAGG CACTTGCAACCATACCCGCACTAAAAGCTACAAATTATCTGTTGCGTTCC CACTGATCATTTAGGTAGGGAGATTTGCGCAATGTAAGAGTTTCTGAGAT GGATGTGTGTGTGGGCGTATGTTCATGAGCGTTTTGAAATGGACCGAGTT GCCCAGATGGCACGGAAAGCGAATCGTGTTTGTTGTGGCTCGTTTGTCGT AAAAAGCTGCACGGCTTATCGTTGCCCCTGAAAAAAATCCTCCCGCGCTC CGTGTTGCAATGCCGATGTTTCTCGGTTCCCCCTCGCGCCACAATCCTTT TTCGACATGAATGCCTCGGAAATCATGTATGTCAAACTGTAGTTTACCCT CAACGGGCGAGTGTGCTCCAAGGGAAAAGTGGACTTCACCGGTTCGATGC CCCCGACAGAAGCTAGGGAGTTTTACGGTGCGTTCGTAGACATGGTCAAG AGCGCACACGCACCCGAACTGGTGAAAGACGGAGTGTTCGGGGCCAAGAT GGAAGTATCGCTTGTGAACGACGGCCCGGTAACTGTCATCGTGGATTCTG GAGAGATGAAAAAGGAGACTCTGCCGAAACCGGAGGCAGGCGAAAAGATT CGGGATAAAGATCCCACTGCTGCACCAGCCTTGGATTCGAAGTGACGCCT GCGAGGTAAGCTATTTCAAGGATTCAGGTTCGAGGTTTTAGTCCCGGTCG CGACAAGAAGAAACGATGTACGCGATTTCGGAAACAGCTCTACGAAGACC GTTAAACGAATGCAGAATTCTGGTTTTAGGGTTAAGGCCGTTTCCCGGCT CCTTCTATATACACCACGTACTATTTTCTGCGCGATGTTCTCGACGTTCC GATTTACGATTTCAAGCCAGCTTTGGTGCATCTCAAGTGCAAGTTTGGTA CCAAAGTCGTTGAAGGGGTTGACGGCAGCGCAGCATGAGGCATTGCATCT CTTGTCATCTCTTTAGCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCG CTGAGGGTGAGTAGGGCGGGGGAAGACGTGGGCTTCAGACAAAGGCCGGG GCTACCCCCGGGCTGTTTGTGTGTCATAATTTGCTTGTGTTGTTCTGGTT GGTTGGTAACGCTGGCAAGAGCAACCCGAAACAAAGCTTTTGGGGCACAG GTCCTGAGACAGCAACATCTAAATTACACACCTGACTGCTCCCGTTCTCA GGATAAAGCCGCTGCAAGCAGCCAGGGTGGGGGCATGCTGAGGAATGGCC ACGGTCTGCTATATCCAAAGCTAACATTTACACGGGCGACGGCATTCTAC CCAAGGCAGTGTGCATGCACTACTGTGAAAAGGTGGAGAACATCGTCGAG GTTGGAACATTCAATGCATAGCCCATGGCCGTCCTGAGGGAAGTGTCTCG CCCCCAAATGCGGTAAAGTTCGCTGGACGTTGCACCACCGCCGGAAGCCT GCGAACACACCTGCGGAAAGGGCTAGAGTGCCGTTACGCAGCCGGTTTTG TGAGGTGTGGTCGCTACGACACATTGCGAAGTCAAGTGTATGGTGCACCG GAAGGTCCGATGAGAGGTAGATGATAGCCAGGTGTTTTTGCCTGGCAGCA GAACCACCGTCACCCTTAGTGATGTTGTGCGGCGGTAGTTTATGCTCTTT CACTATTTCGCAACTATGTAAGGCTAGAGGCGTTGTTGAGCACGCAGTGC AGGGAAATCTTGACGTGAAGGCAATGTTCGCACGGTTGGGTTGTGTTTTG TGTTTTGCTCCCAAAGTACCTGCTTTGAAGCTTCCTGGTAGTGCGGCACT GGTGATACTGCTTTTGGCGATTCAAACCAGTGTTGAGTGACTAGTTGGCC GGTTTGGAGTGGGCATCACATTCGTGGGCCTACATCGTCGAAAAAAGTCG GCCGTAAATTGTGAAGACAAGTCTCAACCCAATACACTATCCACGCAATC TCCCGAGAGACTTGGTCCAAAATCACGTTTTGTGACTTGATTTTAGAGTA GGCCTGCCTCTCTACAACCAAACTCGCGCACCACGCACTTTCTTTTTAGC TTTTCTTCCGCAACGGCGAAAGCTAGGTCCCC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9314:2316..5547-

>mRNA_E_fasciculatus_S2_contig9314.17376.1 ID=mRNA_E_fasciculatus_S2_contig9314.17376.1|Name=mRNA_E_fasciculatus_S2_contig9314.17376.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=585bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9314:2316..5547- (Ectocarpus fasciculatus EfasUO2)
ATGCGCGTCGTTGTCCAGAGAGTGAAGCGAGCAAGCGTGGCGGTGGAGAA
CAAAGATGGAGACGGCACGTCCTCGGAACCATCGACCGTTGTCAGCGAAA
TTGGCAAAGGAATCCTCTGTCTCGTCGGCGTCAAAGAAGGGGACGAGAAG
GGGCATGCAGAGTGGATCTGCAAGCAGATCGTGACCGCAAAGCTGTTCGA
GGGAATGTCTGAGGCGAACGCAGACAAGAGATGGCGGTCCAACATCAAGC
AGAACGGCTTCGAAATACTGTTGGTGTCACAGTTTACCCTCAACGGGCGA
GTGTGCTCCAAGGGAAAAGTGGACTTCACCGGTTCGATGCCCCCGACAGA
AGCTAGGGAGTTTTACGGTGCGTTCGTAGACATGGTCAAGAGCGCACACG
CACCCGAACTGGTGAAAGACGGAGTGTTCGGGGCCAAGATGGAAGTATCG
CTTGTGAACGACGGCCCGGTAACTGTCATCGTGGATTCTGGAGAGATGAA
AAAGGAGACTCTGCCGAAACCGGAGGCAGGCGAAAAGATTCGGGATAAAG
ATCCCACTGCTGCACCAGCCTTGGATTCGAAGTGA
back to top