mRNA_E_fasciculatus_S2_contig9313.17375.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9313.17375.1
Unique NamemRNA_E_fasciculatus_S2_contig9313.17375.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: ARL2_Bind_BART (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHI3_ECTSI)

HSP 1 Score: 247 bits (631), Expect = 7.390e-82
Identity = 124/133 (93.23%), Postives = 126/133 (94.74%), Query Frame = 1
Query:   79 QQTTRTIPRKHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRREKEHARGSNGDSLSGSSSSHK 477
            Q T RTI RKHHEPFLDTADEGQWTS G VEHKLEFTEVYNLFLRHFE+KISGFIEEEAGGTVEQFQQEC+EALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRREKEHAR  NGDSLSGSSSSHK
Sbjct:   30 QHTNRTISRKHHEPFLDTADEGQWTSPGEVEHKLEFTEVYNLFLRHFENKISGFIEEEAGGTVEQFQQECEEALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRREKEHARRGNGDSLSGSSSSHK 162          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: ARL2_Bind_BART (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKV0_9PHAE)

HSP 1 Score: 240 bits (612), Expect = 5.790e-79
Identity = 122/133 (91.73%), Postives = 123/133 (92.48%), Query Frame = 1
Query:   79 QQTTRTIPRKHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRREKEHARGSNGDSLSGSSSSHK 477
            QQT RTI RKHHEPFL+TADEGQWTS   VEHKLEFTEVYNLFL HFEDKISGFIEEEAGGTVEQFQQECKEAL TLEEFSPRRFFIEILLATTDYDRFY LMVGEAKKLRR K HARGSNGDSLSGSSSSHK
Sbjct:   30 QQTNRTIYRKHHEPFLNTADEGQWTSPAEVEHKLEFTEVYNLFLTHFEDKISGFIEEEAGGTVEQFQQECKEALLTLEEFSPRRFFIEILLATTDYDRFYVLMVGEAKKLRRAKAHARGSNGDSLSGSSSSHK 162          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: ARL2_Bind_BART (domain-containing protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0XZQ0_AURAN)

HSP 1 Score: 94.0 bits (232), Expect = 2.590e-19
Identity = 46/109 (42.20%), Postives = 67/109 (61.47%), Query Frame = 1
Query:   94 TIPRKHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRREK 420
            T   KH EPFLD   +G+  +S G +H   F + Y ++L HFE ++   I   AG TV  F    +EAL+   +F P RFF+E LLATT+Y+ F  LM+ EAK++R+++
Sbjct: 1170 TFAEKHIEPFLDALVKGESPTSDGGDHSHSFYDTYKVYLEHFERRVEQHIVA-AGATVGDFMAVAREALENASDFDPNRFFLEALLATTEYETFIVLMMNEAKRIRKQR 1277          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVE5_9STRA)

HSP 1 Score: 82.4 bits (202), Expect = 2.080e-17
Identity = 46/103 (44.66%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   97 IPRKHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKK 405
            + R+H + F         T S   EH+LE+ +VY  +L  FE KI  FIE   G +V++FQ  C++ L+   EFSP+RFF+E LLATT+Y  F  LM GEA+K
Sbjct:   12 VSRRHVDLFASAL-----TMSADDEHRLEYYDVYREYLDEFEKKIHTFIER-TGHSVDEFQTACQKVLEEEGEFSPKRFFVEALLATTEYPIFLSLMKGEARK 108          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YP95_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 4.200e-16
Identity = 41/72 (56.94%), Postives = 49/72 (68.06%), Query Frame = 1
Query:  175 KLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEALQTLEEFSPRRFFIEILLATTDYDRFYFLMV 390
            +LEFTE Y  FL HFE KI   IE   GG   +FQ++C+ AL  L + S RRFFIE LLATT+Y RF+ LMV
Sbjct:    1 RLEFTETYRKFLDHFEAKIQSHIEA-VGGDDAEFQRQCRRALMDLPQGSERRFFIEALLATTEYQRFFVLMV 71          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: Cilia- (and flagella-associated protein 36 n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XLI6_9STRA)

HSP 1 Score: 78.2 bits (191), Expect = 1.430e-15
Identity = 42/109 (38.53%), Postives = 70/109 (64.22%), Query Frame = 1
Query:  103 RKHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEAL--QTLEEFSPRRF--FIEILLATTDYDRFYFLMVGEAKKLRRE 417
            R+H E FLD  D       G VEHK E+ E+++ +LR FE+++S F+E E G T+++F +EC+  +  +    F   ++  F+E LLA+ +Y+ F+ LM+ EA++LRR+
Sbjct:   28 REHAETFLDALD----AKGGDVEHKHEYKEIHDKYLRLFEEELSDFVESE-GSTIDEFFRECRAVVNAKVTGYFDEHKYVWFVEHLLASMEYELFFSLMINEARRLRRK 131          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: Cilia- (and flagella-associated protein 36 n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X8Y9_GLOUD)

HSP 1 Score: 78.2 bits (191), Expect = 1.500e-15
Identity = 41/112 (36.61%), Postives = 72/112 (64.29%), Query Frame = 1
Query:  103 RKHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEALQ-----TLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRREKE 423
            R++ E F+D  +       G VEHK E+ E+++ +LR FE+++S FIE E G T+E+F +EC++ ++        +    ++F+E L+A+ DY++FY LMV EA++L R ++
Sbjct:   27 RENAEVFMDAVE----AKGGDVEHKHEYKELHDRYLRLFEEELSDFIESE-GATIEEFFRECRDIMEGNYTALFSDEHQYKWFVEHLVASMDYNQFYALMVNEARRLNRSRK 133          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: Cilia- (and flagella-associated protein 36 n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067C536_SAPPC)

HSP 1 Score: 74.3 bits (181), Expect = 3.710e-14
Identity = 42/106 (39.62%), Postives = 63/106 (59.43%), Query Frame = 1
Query:  106 KHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKK-LRREK 420
            +H   F D+ D      S  VEHK E+ E+++ +L+ FED++ GF+E+E GGT  QF   CK+ L   ++     +F+  LLA+ +Y  FY LM  EA++ LRR K
Sbjct:   26 EHASAFFDSVD------SDDVEHKHEYKELHDAYLKIFEDRLQGFLEDE-GGTTAQFYAACKDILDEKDDHGEYAWFVNRLLASMEYKLFYGLMRNEARQQLRRRK 124          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: Cilia- (and flagella-associated protein 36 n=2 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RM49_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 6.050e-14
Identity = 42/109 (38.53%), Postives = 65/109 (59.63%), Query Frame = 1
Query:  103 RKHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEA----LQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRRE 417
            R+H + F+D  +       G VEHK E+ E+++ +L+ FE+++S F+E E G T+E+F +EC+E        L E     +F+E LLA  DY  FY LMV EA+ + R+
Sbjct:   27 REHADAFIDATE----AKGGDVEHKHEYKELHDQYLKLFEEELSEFVESE-GSTIEEFFKECREIHDGEYTALFEEHTYAWFVEHLLACMDYKHFYGLMVNEARHMSRK 130          
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Match: Cilia- (and flagella-associated protein 36 n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9ZS38_9STRA)

HSP 1 Score: 76.3 bits (186), Expect = 7.400e-14
Identity = 40/106 (37.74%), Postives = 65/106 (61.32%), Query Frame = 1
Query:  106 KHHEPFLDTADEGQWTSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEALQTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRREKE 423
            +H   F D A       S  VEHK E+ E++N +L+ FED++SGF+E+E GGTV  F   CK+ ++   + +  ++F++ L A+ +Y  FY LMV EA++  R ++
Sbjct:  145 EHAPAFFDAA------RSDDVEHKHEYKELHNAYLKLFEDRLSGFLEDE-GGTVSDFYDACKDVMEQKGDLAEYKWFLDRLHASMEYKLFYGLMVNEARQQLRSRK 243          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9313.17375.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 16
Match NameE-valueIdentityDescription
ARL2_Bind_BART7.390e-8293.23domain-containing protein n=1 Tax=Ectocarpus silic... [more]
ARL2_Bind_BART5.790e-7991.73domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
ARL2_Bind_BART2.590e-1942.20domain-containing protein n=1 Tax=Aureococcus anop... [more]
Hypothetical2.080e-1744.66protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Uncharacterized4.200e-1656.94protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Cilia-1.430e-1538.53and flagella-associated protein 36 n=1 Tax=Pythium... [more]
Cilia-1.500e-1536.61and flagella-associated protein 36 n=1 Tax=Globisp... [more]
Cilia-3.710e-1439.62and flagella-associated protein 36 n=3 Tax=Saprole... [more]
Cilia-6.050e-1438.53and flagella-associated protein 36 n=2 Tax=Phytoph... [more]
Cilia-7.400e-1437.74and flagella-associated protein 36 n=1 Tax=Achlya ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9313contigE_fasciculatus_S2_contig9313:2651..4462 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score248.1
Seed ortholog evalue2.9e-63
Seed eggNOG ortholog2880.D8LHI3
Model size481
Hectar predicted targeting categorysignal peptide
Exons3
EggNOG free text desc.function. Source PGD
EggNOG OGs2C07X@1,2SBZW@2759
Cds size480
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842581.88803-CDS-E_fasciculatus_S2_contig9313:2650..28011696842581.88803-CDS-E_fasciculatus_S2_contig9313:2650..2801Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9313 2651..2801 -
1696842581.9003663-CDS-E_fasciculatus_S2_contig9313:3465..35591696842581.9003663-CDS-E_fasciculatus_S2_contig9313:3465..3559Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9313 3466..3559 -
1696842581.911638-CDS-E_fasciculatus_S2_contig9313:4227..44621696842581.911638-CDS-E_fasciculatus_S2_contig9313:4227..4462Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9313 4228..4462 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9313.17375.1prot_E_fasciculatus_S2_contig9313.17375.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9313 2651..4462 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9313.17375.1

>prot_E_fasciculatus_S2_contig9313.17375.1 ID=prot_E_fasciculatus_S2_contig9313.17375.1|Name=mRNA_E_fasciculatus_S2_contig9313.17375.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=160bp
TTAHRFRVFIALISGWIIQTMSRLLCQQTTRTIPRKHHEPFLDTADEGQW
TSSGGVEHKLEFTEVYNLFLRHFEDKISGFIEEEAGGTVEQFQQECKEAL
QTLEEFSPRRFFIEILLATTDYDRFYFLMVGEAKKLRREKEHARGSNGDS
LSGSSSSHK*
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mRNA from alignment at E_fasciculatus_S2_contig9313:2651..4462-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9313.17375.1 ID=mRNA_E_fasciculatus_S2_contig9313.17375.1|Name=mRNA_E_fasciculatus_S2_contig9313.17375.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1812bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9313:2651..4462- (Ectocarpus fasciculatus EfasUO2)
ACGACGGCACACCGGTTTCGCGTCTTCATTGCGTTGATCTCTGGGTGGAT CATACAAACCATGTCGCGATTGTTGTGTCAACAAACCACCCGTACGATAC CAAGGAAGCACCACGAGCCGTTCTTGGACACCGCGGACGAGGGGCAGTGG ACATCGTCAGGCGGAGTGGAACACAAACTCGAGTTCACGGAGGTGTACAA CTTGTTCTTGAGACACTTCGAAGACAAAATTTCAGGTATTTTGATAAGCT AGCTGCATACATTGTGTAGGTGGACGGCACCAACAGGAACTCATCGTTAC TGGCGCATCCGGAAACCGCAAGAGGGTACAGTAGCGCTGTCCTTCGAAAA GCACTTGCAGAGCTTCGGTGATGTGCAACGGTGGCAATCAGCACTGCCTG TGGCACCAAACTGTCACCTCTCGCTTGGAGTTACCCTTGATGAAGCAAAA TTGGACATGCGTCTCGTGGACCCACAACGAACGGCTATACAAAGAAGTGT CCCATGAGCAGCGAAAAACAATACAAATTTACCTGGATCGTATGCGTGCT CATCCATCGATTGTTAACTATAAGTTGCTGGGGCGTTCGTTTATCGGCCT CTATATTCGTTTTAATGACCAGGGATAATTGCATGAAGGGTTTGAGTTCG TGAGCTGGAATCTCCTCAGGTCCTACCCAAGGGATAGCGATGATCCTACA TCCCCGACCTTTCTGCTTTCGTCCAATTTTCTCGGGGGGGGGTCTTGGTG TCGCATGTTTCGAGAGAGCTCCAGTTTTTTGGGTGTGCCCGTTGCCAAGG GGTCCAGCGACACCAATGTTTGTGGGTTCGTGTGGACATACCACTAACCC CGTGGACAAGGCTAGATTATCCTTCATGAGTTTATCCTGTCGTTCTGTCG CAGGGTTTATCGAGGAAGAGGCGGGGGGGACAGTGGAGCAGTTCCAGCAG GAGTGCAAGGAAGCTCTTCAAACGCTCGAGGAGTTCTCTCCTCGAAGGTT GGTTTATGTTCCAAGAGCGAAGCATACCAACAACTATGCATACAACAACT GTATTACGTTACCAGGAACAGCGATTGATAGGTTATTGGTTGTCTTGGGA CTGGTTACCACCACAACGGGCTGAGTGGTAGAGACAGCATTGCTAAACCG TCATCACGTCGTCGTGTAGATTGCCGCGTCTCACTTGGTTTTAAGGACAG ATGAGGTCATTTTCCAGCTTCATTCCTTCAACAAGGGCGAAAGGTTGCCA TTGATGCTGAACAACGTATTTACGAAAAGCTCTGTCTGTCCACAAGGTCA ATTCCACACCAACCCTCTTTCCTGTCTGCGACGTTGGCTCTTTAGGCGTC GTGGAGACATCGAGCAGAGAAAGGAGATTGATTGCACCACGTTTTGTACG ACACAATTGCGCACCCCAATGCAGGATGCAGGGGGGCCTAGCGGTCGCCT GCTCGGCAAGAACAGTATCCACTCATGCATCCTGAATTTACAAATCTTGC GCGCTATATTGATAGCACCACCGAAGAAATCCAATTGCTGAGTGATTTCG CCTGGTCTTTTCACAACCTGATATATCACTCTCCGTTGGGCTTGGTTTGC AGCAGCTCCTGTTGTTGCTGACGGGCGTAACAACCCATTCATCATCAATT GACGTGCACAGGTTCTTCATCGAGATCCTGCTGGCTACCACAGACTACGA CCGGTTCTATTTTCTCATGGTCGGCGAAGCAAAAAAGCTGAGGAGGGAAA AGGAACATGCACGAGGGAGCAATGGCGACAGCCTTAGTGGGTCCTCTTCG TCGCACAAATAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9313:2651..4462-

>mRNA_E_fasciculatus_S2_contig9313.17375.1 ID=mRNA_E_fasciculatus_S2_contig9313.17375.1|Name=mRNA_E_fasciculatus_S2_contig9313.17375.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=480bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9313:2651..4462- (Ectocarpus fasciculatus EfasUO2)
ACGACGGCACACCGGTTTCGCGTCTTCATTGCGTTGATCTCTGGGTGGAT
CATACAAACCATGTCGCGATTGTTGTGTCAACAAACCACCCGTACGATAC
CAAGGAAGCACCACGAGCCGTTCTTGGACACCGCGGACGAGGGGCAGTGG
ACATCGTCAGGCGGAGTGGAACACAAACTCGAGTTCACGGAGGTGTACAA
CTTGTTCTTGAGACACTTCGAAGACAAAATTTCAGGGTTTATCGAGGAAG
AGGCGGGGGGGACAGTGGAGCAGTTCCAGCAGGAGTGCAAGGAAGCTCTT
CAAACGCTCGAGGAGTTCTCTCCTCGAAGGTTCTTCATCGAGATCCTGCT
GGCTACCACAGACTACGACCGGTTCTATTTTCTCATGGTCGGCGAAGCAA
AAAAGCTGAGGAGGGAAAAGGAACATGCACGAGGGAGCAATGGCGACAGC
CTTAGTGGGTCCTCTTCGTCGCACAAATAG
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