mRNA_E_fasciculatus_S2_contig931.17370.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig931.17370.1
Unique NamemRNA_E_fasciculatus_S2_contig931.17370.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G477_ECTSI)

HSP 1 Score: 310 bits (794), Expect = 3.130e-101
Identity = 165/202 (81.68%), Postives = 173/202 (85.64%), Query Frame = 1
Query:    1 MAVTENIRRQDSSPGDEHRYAKIFEKLDTEDGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFRKGLPLPEVPSRKPKKPKKRQSPGGATKPREGQGKSEITSAKSPKRRSRLASLVGPHQDVDPPDTPIAKSHEPLVACASHPWARRMPKSATLWIIALYRSRSPMTTSQWKSGRLKELHQ 606
            MAVT+NI+ QDS P DEHRYAKIFEKLDTEDGYLSGKRAVVLLRKSG PQETL+KVWALADSD DGRLS KEFCTAMHLIGCFRKGLPLPEVPSRKPKKPKKRQSPGG TKPREGQGK EIT AKSPKRRSRLASLV PHQD +PP   IAKSHEPL+  +      R+ KSATLWI+ L  SRSPM TSQWKS RLKEL Q
Sbjct:    1 MAVTDNIQPQDS-PVDEHRYAKIFEKLDTEDGYLSGKRAVVLLRKSGVPQETLSKVWALADSDVDGRLSLKEFCTAMHLIGCFRKGLPLPEVPSRKPKKPKKRQSPGGDTKPREGQGKREITFAKSPKRRSRLASLVDPHQDANPPGASIAKSHEPLLPLS------RIRKSATLWILTLCGSRSPMITSQWKSRRLKELRQ 195          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Hypothetical (protein n=1 Tax=Notodromas monacha TaxID=399045 RepID=A0A7R9BMI6_9CRUS)

HSP 1 Score: 70.9 bits (172), Expect = 5.630e-11
Identity = 40/94 (42.55%), Postives = 59/94 (62.77%), Query Frame = 1
Query:   16 NIRRQDSSP--------GDEHRYAKIFEKLD-TEDGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFRKGLPLP 270
            ++  QDSSP          + +Y +IF + D ++ G+++G +A  LL ++G  Q TLAK+W+LAD DGDGRLS +EF  AMHL    ++G  LP
Sbjct:  190 SVSSQDSSPVVDWPVPQPTKLKYTQIFNQADKSKTGFMTGMQARQLLVQTGLNQTTLAKIWSLADIDGDGRLSCEEFILAMHLTDMVKRGEQLP 283          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Uncharacterized (protein n=43 Tax=Aureobasidium pullulans TaxID=5580 RepID=A0A074XA01_AURPU)

HSP 1 Score: 68.9 bits (167), Expect = 4.450e-10
Identity = 30/66 (45.45%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   55 RYAKIFEKLDTEDGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFR 252
            +YA ++E+     GYLSG++A  +  ++G P ETL ++W LAD +G G L   EFC AMHLI C++
Sbjct:  145 QYANLYEQ-SAGGGYLSGEQAKAIFERAGLPNETLGRIWQLADREGKGSLDKTEFCIAMHLITCYK 209          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A168P6N4_ABSGL)

HSP 1 Score: 68.2 bits (165), Expect = 6.880e-10
Identity = 36/87 (41.38%), Postives = 50/87 (57.47%), Query Frame = 1
Query:   46 DEHRYAKIFEKLDTEDGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFRKGLPLPE------VPSRK 288
            D++ Y  +F+ L   DG ++G     +L +SG   + LAK+W LAD DGDG +   EF  AMHLI   ++G  LPE      +PSRK
Sbjct:  465 DKNNYNPLFQSLHPRDGKVNGNAVKPVLMESGLSNDDLAKIWRLADWDGDGYMDLDEFSVAMHLITAVQRGAYLPEKLPSTLMPSRK 551          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Putative (epidermal growth factor receptor substrate 15-like 1 n=12 Tax=Culex TaxID=53527 RepID=A0A1Q3FXI3_CULTA)

HSP 1 Score: 67.8 bits (164), Expect = 1.080e-9
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   55 RYAKIFEKLDTE-DGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFRKGLPLPEV 276
            RY +IF K DT+ DG +SG     +  +SG PQ  LA++W L D++  G+L  +EFC AM  +   +KG+P PEV
Sbjct:  291 RYEEIFNKSDTDRDGLVSGFEIKEVFLQSGVPQNLLAQIWGLCDTNQSGKLRLEEFCLAMWFVDRAKKGVPPPEV 365          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Aureobasidium namibiae CBS 147.97 TaxID=1043004 RepID=A0A074X1Z9_9PEZI)

HSP 1 Score: 67.8 bits (164), Expect = 1.100e-9
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   55 RYAKIFEKLDTEDGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFR 252
            +YA ++++     GYLSG++A  +  ++G P ETL ++W LAD +G G L   EFC AMHLI C++
Sbjct:  136 QYANLYDQ-SAGGGYLSGEQAKAIFERAGLPNETLGRIWQLADREGKGSLDKTEFCIAMHLITCYK 200          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aureobasidium subglaciale (strain EXF-2481) TaxID=1043005 RepID=A0A074YYK3_AURSE)

HSP 1 Score: 67.8 bits (164), Expect = 1.110e-9
Identity = 29/66 (43.94%), Postives = 44/66 (66.67%), Query Frame = 1
Query:   55 RYAKIFEKLDTEDGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFR 252
            +YA ++++     GYLSG++A  +  ++G P ETL ++W LAD +G G L   EFC AMHLI C++
Sbjct:  146 QYANLYDQ-SAGGGYLSGEQAKAIFERAGLPNETLGRIWQLADREGKGSLDRTEFCIAMHLITCYK 210          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Hypothetical (protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R8X2U2_9CRUS)

HSP 1 Score: 67.8 bits (164), Expect = 1.120e-9
Identity = 34/73 (46.58%), Postives = 49/73 (67.12%), Query Frame = 1
Query:   55 RYAKIFEKLDT-EDGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFRKGLPLP 270
            +Y + F + D  + GYL+G++A  LL ++   Q TLAK+W+LAD DGDGRL+ +EF  AMHL    ++G  LP
Sbjct:  248 KYTQQFNQADKLKSGYLTGQQARSLLLQTSVQQTTLAKIWSLADVDGDGRLTCEEFVLAMHLTDVVKRGETLP 320          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Uncharacterized (protein n=3 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2SY41_LEPSM)

HSP 1 Score: 67.4 bits (163), Expect = 1.470e-9
Identity = 34/78 (43.59%), Postives = 47/78 (60.26%), Query Frame = 1
Query:   37 SPGDEHRYAKIFEKLDTEDGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFRKGLPLP 270
            SP +  R+   F  +   DGY++G +A     +SG P +TLA++WALAD D DGR+SF+EF  A  LI    KG  +P
Sbjct:    6 SPIERQRHGDQFSSIGPVDGYVNGIQAKGFFMQSGLPPKTLAEIWALADMDSDGRMSFQEFSIACKLITNTLKGFEVP 83          
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Match: Epidermal (growth factor receptor substrate 15-like 1 n=2 Tax=Culex pipiens TaxID=7175 RepID=A0A8D8EW12_CULPI)

HSP 1 Score: 67.0 bits (162), Expect = 1.590e-9
Identity = 33/75 (44.00%), Postives = 47/75 (62.67%), Query Frame = 1
Query:   55 RYAKIFEKLDTE-DGYLSGKRAVVLLRKSGAPQETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFRKGLPLPEV 276
            RY +IF K DT+ DG +SG     +  +SG PQ  LA++W L D++  G+L  +EFC AM  +   +KG+P PEV
Sbjct:  282 RYEEIFNKSDTDRDGLVSGFEIKEVFLQSGVPQNLLAQIWGLCDTNQCGKLRLEEFCLAMWFVDRAKKGIPPPEV 356          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig931.17370.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.130e-10181.68protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Hypothetical5.630e-1142.55protein n=1 Tax=Notodromas monacha TaxID=399045 Re... [more]
Uncharacterized4.450e-1045.45protein n=43 Tax=Aureobasidium pullulans TaxID=558... [more]
Uncharacterized6.880e-1041.38protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0... [more]
Putative1.080e-944.00epidermal growth factor receptor substrate 15-like... [more]
Uncharacterized1.100e-943.94protein (Fragment) n=1 Tax=Aureobasidium namibiae ... [more]
Uncharacterized1.110e-943.94protein n=1 Tax=Aureobasidium subglaciale (strain ... [more]
Hypothetical1.120e-946.58protein n=1 Tax=Darwinula stevensoni TaxID=69355 R... [more]
Uncharacterized1.470e-943.59protein n=3 Tax=Lepeophtheirus salmonis TaxID=7203... [more]
Epidermal1.590e-944.00growth factor receptor substrate 15-like 1 n=2 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig931contigE_fasciculatus_S2_contig931:9024..10070 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score311.6
Seed ortholog evalue2.7e-82
Seed eggNOG ortholog2880.D7G477
Model size612
KEGG koko:K20045
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.endocytosis
EggNOG OGsKOG0998@1,KOG0998@2759
Ec32 ortholog descriptionEPS15 homology (EH)
Ec32 orthologEc-02_001590.1
Cds size612
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842581.2224586-CDS-E_fasciculatus_S2_contig931:9023..91641696842581.2224586-CDS-E_fasciculatus_S2_contig931:9023..9164Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 9024..9164 -
1696842581.2433305-CDS-E_fasciculatus_S2_contig931:9395..96531696842581.2433305-CDS-E_fasciculatus_S2_contig931:9395..9653Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 9396..9653 -
1696842581.2640235-CDS-E_fasciculatus_S2_contig931:9857..100701696842581.2640235-CDS-E_fasciculatus_S2_contig931:9857..10070Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 9858..10070 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig931.17370.1prot_E_fasciculatus_S2_contig931.17370.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig931 9024..10070 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig931.17370.1

>prot_E_fasciculatus_S2_contig931.17370.1 ID=prot_E_fasciculatus_S2_contig931.17370.1|Name=mRNA_E_fasciculatus_S2_contig931.17370.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=204bp
MAVTENIRRQDSSPGDEHRYAKIFEKLDTEDGYLSGKRAVVLLRKSGAPQ
ETLAKVWALADSDGDGRLSFKEFCTAMHLIGCFRKGLPLPEVPSRKPKKP
KKRQSPGGATKPREGQGKSEITSAKSPKRRSRLASLVGPHQDVDPPDTPI
AKSHEPLVACASHPWARRMPKSATLWIIALYRSRSPMTTSQWKSGRLKEL
HQQ*
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mRNA from alignment at E_fasciculatus_S2_contig931:9024..10070-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig931.17370.1 ID=mRNA_E_fasciculatus_S2_contig931.17370.1|Name=mRNA_E_fasciculatus_S2_contig931.17370.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1047bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig931:9024..10070- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGTCACCGAGAACATTCGCCGCCAAGACAGCAGTCCTGGCGACGA ACACAGATACGCCAAAATATTTGAAAAACTGGATACGGAGGATGGATATC TTAGCGGCAAGCGAGCGGTGGTTCTACTGCGAAAGTCGGGCGCGCCACAA GAGACGCTCGCAAAAGTGTGGGCGCTCGCAGATTCTGATGGTGACGGAAG ATTGTCCTTCAAGGTACTGCTGTGCGTTGTCTTTGAGTACATGATGATGC AGTGCACAGCAAAGTCTACTCCGCCCAAGGGCAGGAGGAGGACAGAGCAA AAGTTAAAGTTTTCCGGTTGGCGTCGTCAACTTGCCAACATTGCAGCTCC GTTGATACAGCATTTTATGAAACTGGGGACACTTCGCTCTTCCGTATGCT GTGTTTTCCTTGGGCAGGAGTTTTGCACGGCGATGCACCTCATCGGATGT TTTCGCAAGGGGCTGCCGCTCCCGGAGGTACCGAGTAGGAAGCCAAAGAA GCCCAAGAAACGGCAGTCTCCTGGCGGTGCCACAAAGCCAAGAGAGGGCC AAGGAAAGAGCGAAATAACGTCTGCGAAATCTCCAAAGCGACGATCCCGC CTGGCGTCTCTTGTCGGCCCTCACCAGGATGTTGATCCCCCCGATACTCC CATCGCGAAATCGCACGAACCACTGGTGAGTAAACCTGTTGTATGTACAG GCTGTTCTGGGCGTCAGCCTATCCCCCTTTGGTATTTCCTGGATGCATGT TATCAGGGAGGGGAACCCTTCTGTGTGACCACGGATTGGAGTAAACGGCA CAAAGTGCTGTGAGCGCCGATTTGAAGTGAAGCACAATAAAAACTGGTGC TGCCGCACATTTCATTTGAACCGGCGGCAATTCAATGTTAAATTGATCCG TCGGAGGTTGCTTGTGCGTCACACCCATGGGCACGCAGGATGCCCAAGTC TGCGACTCTCTGGATAATTGCCTTGTACAGGAGCAGAAGCCCAATGACTA CGAGTCAGTGGAAAAGCGGGCGTCTCAAGGAATTGCACCAGCAGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig931:9024..10070-

>mRNA_E_fasciculatus_S2_contig931.17370.1 ID=mRNA_E_fasciculatus_S2_contig931.17370.1|Name=mRNA_E_fasciculatus_S2_contig931.17370.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=612bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig931:9024..10070- (Ectocarpus fasciculatus EfasUO2)
ATGGCTGTCACCGAGAACATTCGCCGCCAAGACAGCAGTCCTGGCGACGA
ACACAGATACGCCAAAATATTTGAAAAACTGGATACGGAGGATGGATATC
TTAGCGGCAAGCGAGCGGTGGTTCTACTGCGAAAGTCGGGCGCGCCACAA
GAGACGCTCGCAAAAGTGTGGGCGCTCGCAGATTCTGATGGTGACGGAAG
ATTGTCCTTCAAGGAGTTTTGCACGGCGATGCACCTCATCGGATGTTTTC
GCAAGGGGCTGCCGCTCCCGGAGGTACCGAGTAGGAAGCCAAAGAAGCCC
AAGAAACGGCAGTCTCCTGGCGGTGCCACAAAGCCAAGAGAGGGCCAAGG
AAAGAGCGAAATAACGTCTGCGAAATCTCCAAAGCGACGATCCCGCCTGG
CGTCTCTTGTCGGCCCTCACCAGGATGTTGATCCCCCCGATACTCCCATC
GCGAAATCGCACGAACCACTGGTTGCTTGTGCGTCACACCCATGGGCACG
CAGGATGCCCAAGTCTGCGACTCTCTGGATAATTGCCTTGTACAGGAGCA
GAAGCCCAATGACTACGAGTCAGTGGAAAAGCGGGCGTCTCAAGGAATTG
CACCAGCAGTGA
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