mRNA_E_fasciculatus_S2_contig931.17369.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig931.17369.1
Unique NamemRNA_E_fasciculatus_S2_contig931.17369.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig931.17369.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G477_ECTSI)

HSP 1 Score: 484 bits (1246), Expect = 7.760e-168
Identity = 277/303 (91.42%), Postives = 286/303 (94.39%), Query Frame = 1 
Query:   22 RKEAGESQDHEGQYRIRRPNLRQLDDKDVDAVFAEGPGAINSLRDVQSWRVLVMGLQRLSGKDMARHVPTNVRPHRRHTLPLAAKGDLARKQDYLPGRGRRTSLLGTAYEPAALFLKQRAERKSVREADLEKDTARAAEKWNLKPLLEKPERCAIGETDGEQTSSSRGNLSVAGLPLLDEDVDIIVHLLRQNHAFTRLDLSRCFLSEKQFVSLAQALAWNSRIEELFLQXXXXXXXXXXXXXXXXXXXXHIHCLDVRGCKGLDEKSIRVLLGGARSKGNLLTFNGMKLANLRAEGTDELDLSG 930
            RKEA ES+DH GQ RIRRPNLRQLDDKDVDAVFAEGPGAINSLRDVQSWRVLVMGLQRLSGKDMARHVPTNVRP RRHTLPLAAKGDLARKQDYLPGRGRRTSLLGTAYEPAALFLKQRAER+S+READLEKDTA+AAEKWNLKPL EK ERC   E+DGEQTSS RGNLSVAGLPLLDEDVDIIVHLLRQNHAF RLDLSRCFLSEKQFVSLAQALAWNSRIEELF  XXXXXXXXXXXXXXXXXXXX  H LDVRGCKGLDEKSI+V+LGGARSKGNLLTFNGM LA+LRAEG+DELDLSG
Sbjct:  197 RKEAEESRDHGGQSRIRRPNLRQLDDKDVDAVFAEGPGAINSLRDVQSWRVLVMGLQRLSGKDMARHVPTNVRPRRRHTLPLAAKGDLARKQDYLPGRGRRTSLLGTAYEPAALFLKQRAERRSIREADLEKDTAKAAEKWNLKPLREKSERC---ESDGEQTSS-RGNLSVAGLPLLDEDVDIIVHLLRQNHAFKRLDLSRCFLSEKQFVSLAQALAWNSRIEELFXXXXXXXXXXXXXXXXXXXXXXXXHSLDVRGCKGLDEKSIKVILGGARSKGNLLTFNGMNLADLRAEGSDELDLSG 495
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig931.17369.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized7.760e-16891.42protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig931contigE_fasciculatus_S2_contig931:6196..8762 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score487.3
Seed ortholog evalue5.5e-135
Seed eggNOG ortholog2880.D7G477
Model size933
KEGG koko:K20045
Hectar predicted targeting categoryother localisation
Exons8
EggNOG free text desc.endocytosis
EggNOG OGsKOG0998@1,KOG0998@2759
Cds size933
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig931.17369.1prot_E_fasciculatus_S2_contig931.17369.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig931 6196..8762 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842581.107057-CDS-E_fasciculatus_S2_contig931:6195..63261696842581.107057-CDS-E_fasciculatus_S2_contig931:6195..6326Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 6196..6326 -
1696842581.1240692-CDS-E_fasciculatus_S2_contig931:6593..66991696842581.1240692-CDS-E_fasciculatus_S2_contig931:6593..6699Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 6594..6699 -
1696842581.1387239-CDS-E_fasciculatus_S2_contig931:6874..69881696842581.1387239-CDS-E_fasciculatus_S2_contig931:6874..6988Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 6875..6988 -
1696842581.148116-CDS-E_fasciculatus_S2_contig931:7327..74331696842581.148116-CDS-E_fasciculatus_S2_contig931:7327..7433Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 7328..7433 -
1696842581.160382-CDS-E_fasciculatus_S2_contig931:7613..77181696842581.160382-CDS-E_fasciculatus_S2_contig931:7613..7718Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 7614..7718 -
1696842581.1728022-CDS-E_fasciculatus_S2_contig931:7996..81391696842581.1728022-CDS-E_fasciculatus_S2_contig931:7996..8139Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 7997..8139 -
1696842581.1828358-CDS-E_fasciculatus_S2_contig931:8315..83811696842581.1828358-CDS-E_fasciculatus_S2_contig931:8315..8381Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 8316..8381 -
1696842581.1926591-CDS-E_fasciculatus_S2_contig931:8600..87621696842581.1926591-CDS-E_fasciculatus_S2_contig931:8600..8762Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig931 8601..8762 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig931.17369.1

>prot_E_fasciculatus_S2_contig931.17369.1 ID=prot_E_fasciculatus_S2_contig931.17369.1|Name=mRNA_E_fasciculatus_S2_contig931.17369.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=311bp
MEAFTIGRKEAGESQDHEGQYRIRRPNLRQLDDKDVDAVFAEGPGAINSL
RDVQSWRVLVMGLQRLSGKDMARHVPTNVRPHRRHTLPLAAKGDLARKQD
YLPGRGRRTSLLGTAYEPAALFLKQRAERKSVREADLEKDTARAAEKWNL
KPLLEKPERCAIGETDGEQTSSSRGNLSVAGLPLLDEDVDIIVHLLRQNH
AFTRLDLSRCFLSEKQFVSLAQALAWNSRIEELFLQECVFTGVRTAALAD
VLTLNSHIHCLDVRGCKGLDEKSIRVLLGGARSKGNLLTFNGMKLANLRA
EGTDELDLSG*
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mRNA from alignment at E_fasciculatus_S2_contig931:6196..8762-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig931.17369.1 ID=mRNA_E_fasciculatus_S2_contig931.17369.1|Name=mRNA_E_fasciculatus_S2_contig931.17369.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2567bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig931:6196..8762- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGCTTTCACAATCGGCCGAAAGGAGGCGGGAGAGAGTCAGGATCA
TGAAGGACAATATCGTATTCGTCGGCCGAACCTTCGCCAGCTGGACGACA
AGGATGTGGACGCCGTTTTTGCGGAGGGGCCAGGGGCTATTAACTCTCTT
CGCGACGTGCAGGTGCTACGAGCTTGCAAAATTAAATAGCGTTGTTGTCA
TCCTGCGTGATCGTACGCGCGTTCTAATGGTCACGCACCAAGAATTTGCT
TTCAAAGAGCCACGTCTACTACACCGCGGGTGGTCTGCCAGTCCCCCACC
AAATAGGCGCACGTCATGCCGGCAGCCTCAACACACACACCTTTTGGTAT
GGGGTGCCTCTTCGGTGTGCTTTATCTGCAGAGTTGGCGCGTCCTCGTCA
TGGGCCTTCAGCGACTGTCGGGCAAGGACATGGCACGTCATGTACCGGTG
GGTGAGCTTGGTGTCGTACTCTACGTTCGGCGGGCTGTGAATACGAGGAA
TGCGTACGTGGGCCGTACCCTTACTATTGAACGTACCTGTCTCTTTACTT
GCTGATGATGTAGCCTTGGGTTTTCTTCTTTTCGACCCGAAATGAATCCC
ATTTGTTGCCTCCCGCATGAAAGACGAACGTGAGGCCTCATCGACGGCAT
ACCTTGCCACTAGCCGCGAAGGGAGACCTCGCACGAAAACAGGATTATCT
GCCAGGTAGAGGTCGAAGAACAAGCCTCCTCGGGACCGCTTACGAGCCAG
CCGCGTTGTTTCTCAAGTGAGCTAAGCTCTTGGAGACGTAGACTCGCAGC
CGGCTAAATCCCTACCAGTAAATAGTTACGTTTTGAACTGACTTTGACAA
GTGTTCTTGTTCCAACAGCCACCCTCGGGCCGCGCTCAAGGTGCTTGGTG
GTTAAGAACAGCAAGCCAAAACCCGTCGAAGCTCGAATCATGGGCCTCAT
TGACAGTATCAGGCATTGAAGGCAATACTATATGTATTCATAAGTAGGGC
AACGCTGGGATCTTGAATACCTTCTTGACCGTTCTTTTTCGCAGGCAACG
GGCCGAGAGAAAGAGTGTTCGGGAGGCGGACTTAGAAAAGGATACGGCAA
GGGCAGCTGAAAAATGGAACCTCAAACCCTTGCTGGAGAAACCTGAGAGG
TAAGAGGTAAAAACTGAGAGGTTCTTCGTAGGTTTCGGCTGGTATTTAGT
CTTGCTCAACGATGCTTTGTGGTTGCATTGCATCGCATACGATCCGTGTG
GTTGCCACGATAAGCGTCGCTCGTGGCTCGCGGTGATCCTATTGTAAACT
TGCGGTTTTTCAACATCTCCAACGCGAAGGTGCGCAATCGGTGAAACTGA
TGGAGAGCAAACATCCAGTTCAAGAGGGAACCTGAGTGTCGCTGGGCTGC
CACTTCTGGACGAGGATGTTGACATAATCGTGCACGTGAGATTTTGCAGC
GTAGGAACTCAATAACCAGCCCCGTACTCAGAGAAGGCCGCGGTATGTAC
CCCGGGCTGGTTGTATTGCTACGGTGTTTCCATGTTCTTCTCGACGTGTC
GTCGTTTCCCCCGTCGGTATTTCTCTCGTGGAACATCAAAACCTCTCGAA
AAAAGCAATAGGACAAACAAGGATTCGGTGACTGCAGGCAGGAGACCTCG
TCCAATCCAACCCATAGATCAAGCGATCGACAACGGTATCAAGAACAGCA
GTGAAAGGCAGTCGCTTCAACTAACATGTTCGTCTGCCGCGCACGTTCTG
TAACTCTTGTGTCCCATCCTTCAGCTGCTGCGGCAAAATCACGCCTTCAC
ACGACTGGACCTGAGCAGGTGCTTCCTGTCCGAAAAACAGTTTGTCTCGT
TGGCGCAAGCGTTGGCGTGGAATTCTCGTATCGAAGAGGTGAGTTCAGAC
ACTGAGCTTGGATCGCCTGCAGAGCACAGTATCACTGTCGCCTATTCCTA
TATTTCGCCGAGGTGGAGCCAAGTGTTAGTTGCCCTATGCATGCAATGTT
TTATGTGCATTTCGCGATCTCCTCACGCGTTGCTCTACATTCCCTTCGAA
TGCATGTTTACAGCTTTTCCTCCAAGAATGCGTCTTCACAGGCGTGAGGA
CCGCGGCTCTAGCAGATGTGCTGACATTGAACAGTCACATTCATTGTCTT
GACGTCAGAGGATGCAAGGGTGAGCGGTTCACGGAGGGTTAAAAGGGCTG
TCGGCTTGGAACCGCGTGCAAGTGCTACTATCGTTTTGGATGACCACGCC
AGCTTGCCGGCGCATTGAGAGAGACAACGCCTACAGGAGATGATGTATGG
TCCTGTGTAGTACGCACCCACAATGCGTCGTACATACTCACAAGTCCGCA
TTCACGCATGGTTAGTGAGAAAACCTACGACACATTTGCTGATGCGGTGT
ACCTCCTCTCGATGAACGCGCCTGACCCCAAATCAGGTCTGGACGAGAAG
AGCATTAGAGTACTTCTCGGGGGAGCGCGTAGCAAAGGAAACCTTTTGAC
GTTCAACGGCATGAAGCTCGCCAACCTACGTGCTGAAGGCACCGACGAGC
TGGATTTGAGCGGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig931:6196..8762-

>mRNA_E_fasciculatus_S2_contig931.17369.1 ID=mRNA_E_fasciculatus_S2_contig931.17369.1|Name=mRNA_E_fasciculatus_S2_contig931.17369.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=933bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig931:6196..8762- (Ectocarpus fasciculatus EfasUO2)
ATGGAAGCTTTCACAATCGGCCGAAAGGAGGCGGGAGAGAGTCAGGATCA
TGAAGGACAATATCGTATTCGTCGGCCGAACCTTCGCCAGCTGGACGACA
AGGATGTGGACGCCGTTTTTGCGGAGGGGCCAGGGGCTATTAACTCTCTT
CGCGACGTGCAGAGTTGGCGCGTCCTCGTCATGGGCCTTCAGCGACTGTC
GGGCAAGGACATGGCACGTCATGTACCGACGAACGTGAGGCCTCATCGAC
GGCATACCTTGCCACTAGCCGCGAAGGGAGACCTCGCACGAAAACAGGAT
TATCTGCCAGGTAGAGGTCGAAGAACAAGCCTCCTCGGGACCGCTTACGA
GCCAGCCGCGTTGTTTCTCAAGCAACGGGCCGAGAGAAAGAGTGTTCGGG
AGGCGGACTTAGAAAAGGATACGGCAAGGGCAGCTGAAAAATGGAACCTC
AAACCCTTGCTGGAGAAACCTGAGAGGTGCGCAATCGGTGAAACTGATGG
AGAGCAAACATCCAGTTCAAGAGGGAACCTGAGTGTCGCTGGGCTGCCAC
TTCTGGACGAGGATGTTGACATAATCGTGCACCTGCTGCGGCAAAATCAC
GCCTTCACACGACTGGACCTGAGCAGGTGCTTCCTGTCCGAAAAACAGTT
TGTCTCGTTGGCGCAAGCGTTGGCGTGGAATTCTCGTATCGAAGAGCTTT
TCCTCCAAGAATGCGTCTTCACAGGCGTGAGGACCGCGGCTCTAGCAGAT
GTGCTGACATTGAACAGTCACATTCATTGTCTTGACGTCAGAGGATGCAA
GGGTCTGGACGAGAAGAGCATTAGAGTACTTCTCGGGGGAGCGCGTAGCA
AAGGAAACCTTTTGACGTTCAACGGCATGAAGCTCGCCAACCTACGTGCT
GAAGGCACCGACGAGCTGGATTTGAGCGGGTGA
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