mRNA_E_fasciculatus_S2_contig9303.17360.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9303.17360.1
Unique NamemRNA_E_fasciculatus_S2_contig9303.17360.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9303.17360.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFF8_ECTSI)

HSP 1 Score: 137 bits (345), Expect = 5.250e-41
Identity = 72/73 (98.63%), Postives = 72/73 (98.63%), Query Frame = 1 
Query:    1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDKRIRNPPQAAVDRMLANPATRSALERANADMAAAASK 219
            MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRD RIRNPPQAAVDRMLANPATRSALERANADMAAAASK
Sbjct:    1 MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDMRIRNPPQAAVDRMLANPATRSALERANADMAAAASK 73
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BLAST of mRNA_E_fasciculatus_S2_contig9303.17360.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0K0_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 2.900e-10
Identity = 31/37 (83.78%), Postives = 35/37 (94.59%), Query Frame = -2 
Query:   90 MSAFALSNADLVAGFASIRSTAACGGLRIRLSRFKSM 200
            MSAFALSNADLVAGFASI STAACGG+R+R+SRF S+
Sbjct:    1 MSAFALSNADLVAGFASILSTAACGGVRMRMSRFNSL 37
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9303.17360.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized5.250e-4198.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.900e-1083.78protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9303contigE_fasciculatus_S2_contig9303:296..2933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size219
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_006160.1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842580.4901104-CDS-E_fasciculatus_S2_contig9303:295..4221696842580.4901104-CDS-E_fasciculatus_S2_contig9303:295..422Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9303 296..422 -
1696842580.5008376-CDS-E_fasciculatus_S2_contig9303:2841..29331696842580.5008376-CDS-E_fasciculatus_S2_contig9303:2841..2933Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9303 2842..2933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9303.17360.1prot_E_fasciculatus_S2_contig9303.17360.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9303 296..2933 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9303.17360.1

>prot_E_fasciculatus_S2_contig9303.17360.1 ID=prot_E_fasciculatus_S2_contig9303.17360.1|Name=mRNA_E_fasciculatus_S2_contig9303.17360.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=73bp
MGGVSGLMSLTNYLTVGRTDRLIGLDDFDYMLLNRDKRIRNPPQAAVDRM
LANPATRSALERANADMAAAASK
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mRNA from alignment at E_fasciculatus_S2_contig9303:296..2933-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9303.17360.1 ID=mRNA_E_fasciculatus_S2_contig9303.17360.1|Name=mRNA_E_fasciculatus_S2_contig9303.17360.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2638bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9303:296..2933- (Ectocarpus fasciculatus EfasUO2)
ATGGGAGGCGTATCCGGGCTCATGTCGTTGACGAACTACCTGACGGTCGG
CCGCACGGACAGGCTCATCGGCCTGGACGACTTCGATTACATGTAAGCCC
CCCAAGAAATGCGTGCGTTTGTTTGTCGGTTATTGGCATCGACGACGGTA
ACCAGCTGACCAATGAAAATACGTCAGATGAGAAGATGTCAGTCTCAGTG
TGGTTGAAGTAGAAACTTTTTCAGGGCCATGATCTTGGATCCCGTACGCG
TTTGTGTGAGTGTATCAAATAGCATCGACCACGGTGCCAAGCTGACCAAT
GAAAATGCGCCAGGCTCAACGCGGGTAAAAACAGGAAACGCTCAATACAG
GCCGTGATCCGGGGCCCAGTAGGGGGGGGGGGTCATAAGGGAGTCTAAGC
GTCCGTGTGTGCCTGCCTGTATCTATCTTGCTAGCATCGACCGGCCTTAA
CCGGCTGGTCTATGCAAAGCATCGGCGCAGCGTGTGTGTGTGTTTATCTT
CAAGAGACACCATTGAATTCGAGGAGAACCATCCGCCTTCGACCGAACTC
AGAGGCAAATTTTGAGTAGGGAGAACGACACAACAGGGCATATATCCCGG
TCCCAAAAGCGACTCAGCTTGGCACTTCCTATTTACAACAGCGTCAAAGA
GCCCAACTGATTGGTCAAACGTCCACTGTCATGCTGCCGTGTCCCAAGTA
GCCCGGGTTACACCTTGCCACGGCTACTCTCATCCAGAATCGTACCCTGA
TTGCGGAAATGTGCCTTGATCTGACGGGAAATTTGGAGCCTTTTGGAACC
TTTTCGATCAACCAGTTCTTCCCGCCCGAAACAATCAATGTCTGGCACAC
AGCAGGCTTCCGTTGGGAAGGCAATCGATTTGTTGTGAGGTATGCGGGAC
ACGAGTCACGCTTAGAACGCGATCGATCCAGCATGATTGAAAGCAGCATG
GCTGACGCGTAGACTCAAAAGGGATGGATGTGTGGCGGCGAGCTCGTGGC
GGCGGAGAGCCGCAAGGACACGCACACGCGCGCGCCGACCGAATTGTCAT
GGAAGCAGTGGGCGTTCAACCCAACCAAAAGCAGAGGAGATTGAACGTGG
TGCAAAGTATCACAGAATGGTGCCGGAGGAGCGGAGGCTTTATGAGAATC
CTTCTGAACCCAACCCCAACGATAGGATGTGCGTGTTGCGGTAAAGGAAT
GTCGGCGAAGATGTGTAGTGGCGTGGTGTGGCTGTAGGCGAGCAATTTGT
TCGCCGCCACTCGTACCTTCCACGATGATGATTCGGTCGGCGTGTGCGTG
TGTGTCTGGCCTTCGGCCGCTCCGCCACCACGAGGTTGCCGCCACACAAC
CATAATCCAAACACACATAATCTTTGAGTCGACGTGGCTGCCTTACTGCT
TCCAACCATACTGGATGGGTCGCGTTCTGAGCGTGATGACTCATACTTGA
CAACTTGCCGGTTACTTTCCCAACGGCAAAGTGCTGTGTGCCAGCCATTG
TTTGTTTGGAGCCGGAAGAAGTGATGGTTGGTATCCAATGGTTGAATCTC
AAATCGATTCCTGCGGATGAAATGGCCGTCGAAGGAGTCCCATATGCCGT
CAGATGAGGGTACATTGCCGAAATTGGGGTGACTTCCTAGAGAAAGTAGC
CGTGGCAGGGTGTACCATGTGCTATTTTGGACACCGCAGGGTGAAAGTGG
ACGTCGACCAATCAGCTGGGCTTGCGTGACGCTGTCAACATATTATGGAC
CCAGCTAACTGGAGTGGTGCCGGAGCCAGCAGTCGCTGAAGAGCCATGTT
ACCGCCCCGCACAGCAAGAGATGCAGTCGTTTTTACCCTGTTGATTATGT
TGCCCTTTGAAGTGCATTTGTCTGAGACGAAGACTCAGAGACGTATTCTG
AGGTCCGCCTAGCTCAGAGACAATCTTTCGAAGTCCGCATGATGTGCAGC
GGTGAAGGCTCCAACGATTCACACCGGGAATATCACGAACGCGGAGACAA
GATGGTGGGGCGAGGAGAAGCCACAAAAGGCTTGACGAAGCCACATGAAA
CTGAAAACGCCGCGTCTGAATAGCGTACAACGCCGAGGGAGAGGTCGCAG
AGAAAGTGCCCTGAGCAGGCGGCGCGCATCGCCTACGGCCGAGGGAATAG
CAGCACAGCGAGGCAACCGGGCCATTTGTTGAGCAGGAGGGGGGGTTGCC
GGCTTGCCCGTTTTTTTTTTAATTTCGGGCAATCAAGCGGTGGTATTTAC
TGCCGCATTTTTCTGTAGCACCATGCCGCACGTGCATGCTACCGAACGTC
CTCAGTTAGCCACTGGTATGGATGGATCGATTCCTGCCCGGTTCTCTTTA
CCATGCCCCCCACACACCACAACCACGTCTCGAGCACACTGTCCTTTAAC
TCTACCTGCTAGCTACAAACGACGCGGGGTGTGTTGGCGTCTTCCTGTTC
GTTTCACGCGTACACACCCTTTGCGGCGCTTCTTTGTTCCGCCTGGCTTT
TTTTCTTCCAGGCTTTTGAACCGCGACAAGCGAATCCGCAACCCTCCACA
AGCCGCGGTGGACCGGATGCTGGCGAATCCGGCCACAAGGTCTGCGTTGG
AGAGGGCAAACGCCGACATGGCAGCAGCCGCAAGCAAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9303:296..2933-

>mRNA_E_fasciculatus_S2_contig9303.17360.1 ID=mRNA_E_fasciculatus_S2_contig9303.17360.1|Name=mRNA_E_fasciculatus_S2_contig9303.17360.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=219bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9303:296..2933- (Ectocarpus fasciculatus EfasUO2)
ATGGGAGGCGTATCCGGGCTCATGTCGTTGACGAACTACCTGACGGTCGG
CCGCACGGACAGGCTCATCGGCCTGGACGACTTCGATTACATGCTTTTGA
ACCGCGACAAGCGAATCCGCAACCCTCCACAAGCCGCGGTGGACCGGATG
CTGGCGAATCCGGCCACAAGGTCTGCGTTGGAGAGGGCAAACGCCGACAT
GGCAGCAGCCGCAAGCAAG
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