mRNA_E_fasciculatus_S2_contig9295.17348.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9295.17348.1
Unique NamemRNA_E_fasciculatus_S2_contig9295.17348.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: C3HC-type (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LF30_ECTSI)

HSP 1 Score: 123 bits (309), Expect = 8.410e-32
Identity = 53/56 (94.64%), Postives = 54/56 (96.43%), Query Frame = 1 
Query:   19 PSADKPSCRPWDYEGFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQ 186
            P ADKP+CRPWDYE FKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQ
Sbjct:   53 PLADKPTCRPWDYESFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQ 108
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: Aste57867_15448 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485L453_9STRA)

HSP 1 Score: 66.2 bits (160), Expect = 3.400e-11
Identity = 27/49 (55.10%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   40 CRPWDYEGFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQ 186
            C P + + F+AR+ATF+ L+WF+KP   +   CARYGWINTG D LSC+
Sbjct:   49 CHPNNRKDFQARVATFSTLHWFAKPVELNLLACARYGWINTGPDELSCK 97
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: C3HC-type (domain-containing protein n=2 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4Z8A1_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.290e-10
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   40 CRPWDYEGFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQ 186
            C P +   F+AR+ATF+ +NWF+KPA  +   CAR+GWIN+G D L+C+
Sbjct:   34 CHPNNRADFQARVATFSSINWFAKPAELNLLTCARFGWINSGPDELACK 82
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: Dynamin-type (G domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A3R7EFQ5_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 2.390e-10
Identity = 25/49 (51.02%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   40 CRPWDYEGFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQ 186
            C P +   F+AR+ATF+ +NWF+KPA  +   CAR+GWIN+G D L+C+
Sbjct:  465 CHPNNRADFQARVATFSSINWFAKPAELNLLTCARFGWINSGPDELACK 513
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: Uncharacterized (protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0X425_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 5.660e-10
Identity = 24/49 (48.98%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:   40 CRPWDYEGFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQ 186
            C P + + F+AR+ATFT ++WF+KP   +   CAR+GWIN+G D L+C+
Sbjct:   51 CHPNNRKDFQARVATFTTMHWFAKPVELNLLTCARFGWINSGPDELTCK 99
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: Predicted (protein n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9V203_MONBE)

HSP 1 Score: 61.6 bits (148), Expect = 1.570e-9
Identity = 24/47 (51.06%), Postives = 32/47 (68.09%), Query Frame = 1 
Query:   43 RPWDYEGFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSC 183
            RPW+ + F  R+ ++    WF+KP   SP  CAR+GWINTG DTL+C
Sbjct:   65 RPWNMQQFHRRVDSYNLNTWFAKPIRLSPLECARFGWINTGPDTLTC 111
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: nuclear-interacting (partner of ALK n=2 Tax=Epinephelini TaxID=1505891 RepID=UPI001C4B8F1E)

HSP 1 Score: 57.8 bits (138), Expect = 3.520e-8
Identity = 23/49 (46.94%), Postives = 30/49 (61.22%), Query Frame = 1 
Query:   40 CRPWDYEGFKARLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSCQ 186
            C   + E F +R+ +++ L W  KP   SP +CARYGWIN GRD L C 
Sbjct:   63 CEATNKEAFFSRVESYSCLKWAGKPRTLSPLMCARYGWINIGRDMLKCS 111
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3GUD2_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 3.140e-7
Identity = 27/53 (50.94%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   37 SCRPWDYEGFKARLATFTPLN-WFSKPAFASPAVCARYGWIN--TGRDTLSCQ 186
            SCRPW+Y+ +  RLATF   + WF+KPA  SP  CA  GW    + RD L CQ
Sbjct:   35 SCRPWNYDDYLNRLATFRESSRWFAKPACLSPLQCALLGWSCNLSKRDCLVCQ 87
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: Uncharacterized (protein n=1 Tax=Spizellomyces punctatus (strain DAOM BR117) TaxID=645134 RepID=A0A0L0HK72_SPIPD)

HSP 1 Score: 48.9 bits (115), Expect = 4.580e-5
Identity = 21/37 (56.76%), Postives = 23/37 (62.16%), Query Frame = 1 
Query:   73 RLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSC 183
            RL TF    WF+K    S  VCARYGWIN G +TL C
Sbjct:   37 RLKTFKETTWFAKSDDLSAPVCARYGWINRGLETLYC 73
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BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Match: Uncharacterized (protein n=1 Tax=Spizellomyces sp. 'palustris' TaxID=117820 RepID=A0A507F9L2_9FUNG)

HSP 1 Score: 48.9 bits (115), Expect = 4.580e-5
Identity = 21/37 (56.76%), Postives = 22/37 (59.46%), Query Frame = 1 
Query:   73 RLATFTPLNWFSKPAFASPAVCARYGWINTGRDTLSC 183
            RL TF    WF K    S  VCARYGWIN G +TL C
Sbjct:   37 RLKTFKETTWFGKSDDLSAPVCARYGWINRGSETLYC 73
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9295.17348.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 10
Match NameE-valueIdentityDescription
C3HC-type8.410e-3294.64domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Aste57867_154483.400e-1155.10protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
C3HC-type2.290e-1051.02domain-containing protein n=2 Tax=Aphanomyces asta... [more]
Dynamin-type2.390e-1051.02G domain-containing protein n=1 Tax=Aphanomyces as... [more]
Uncharacterized5.660e-1048.98protein n=1 Tax=Aphanomyces euteiches TaxID=100861... [more]
Predicted1.570e-951.06protein n=1 Tax=Monosiga brevicollis TaxID=81824 R... [more]
nuclear-interacting3.520e-846.94partner of ALK n=2 Tax=Epinephelini TaxID=1505891 ... [more]
Hypothetical3.140e-750.94protein (Fragment) n=1 Tax=Spumella elongata TaxID... [more]
Uncharacterized4.580e-556.76protein n=1 Tax=Spizellomyces punctatus (strain DA... [more]
Uncharacterized4.580e-556.76protein n=1 Tax=Spizellomyces sp. 'palustris' TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9295contigE_fasciculatus_S2_contig9295:5047..5238 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score124.4
Seed ortholog evalue1.9e-26
Seed eggNOG ortholog2880.D8LF30
Preferred nameZC3HC1
Model size192
KEGG rclassRC00003,RC00336
KEGG koko:K00565
KEGG ReactionR03805
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0006403,GO:0006405,GO:0006406,GO:0006611,GO:0006810,GO:0006886,GO:0006913,GO:0008104,GO:0008150,GO:0008152,GO:0009966,GO:0009968,GO:0010467,GO:0010646,GO:0010648,GO:0010941,GO:0012505,GO:0015031,GO:0015833,GO:0015931,GO:0016020,GO:0019899,GO:0019900,GO:0019901,GO:0023051,GO:0023057,GO:0031090,GO:0031503,GO:0031965,GO:0031967,GO:0031975,GO:0033036,GO:0034613,GO:0042886,GO:0042981,GO:0043066,GO:0043067,GO:0043069,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0045184,GO:0046907,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0051028,GO:0051168,GO:0051169,GO:0051179,GO:0051234,GO:0051236,GO:0051641,GO:0051649,GO:0060548,GO:0065007,GO:0070727,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:1901099,GO:2001233,GO:2001234,GO:2001236,GO:2001237,GO:2001239,GO:2001240
Exons1
EggNOG free text desc.zinc ion binding
EggNOG OGsKOG4765@1,KOG4765@2759
EC2.1.1.56
Cds size192
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842578.672578-CDS-E_fasciculatus_S2_contig9295:5046..52381696842578.672578-CDS-E_fasciculatus_S2_contig9295:5046..5238Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9295 5047..5238 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9295.17348.1prot_E_fasciculatus_S2_contig9295.17348.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9295 5047..5238 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9295.17348.1

>prot_E_fasciculatus_S2_contig9295.17348.1 ID=prot_E_fasciculatus_S2_contig9295.17348.1|Name=mRNA_E_fasciculatus_S2_contig9295.17348.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=64bp
ASRCDSPSADKPSCRPWDYEGFKARLATFTPLNWFSKPAFASPAVCARYG
WINTGRDTLSCQW*
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mRNA from alignment at E_fasciculatus_S2_contig9295:5047..5238+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9295.17348.1 ID=mRNA_E_fasciculatus_S2_contig9295.17348.1|Name=mRNA_E_fasciculatus_S2_contig9295.17348.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=192bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9295:5047..5238+ (Ectocarpus fasciculatus EfasUO2)
GCTTCGCGTTGCGACTCTCCGTCTGCAGACAAACCCAGCTGCCGTCCGTG
GGACTACGAGGGCTTCAAGGCCAGGCTGGCGACCTTCACACCGCTCAACT
GGTTTTCCAAACCGGCCTTCGCGTCCCCGGCGGTATGCGCCCGCTACGGG
TGGATCAACACTGGACGGGACACGCTTTCGTGCCAGTGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9295:5047..5238+

>mRNA_E_fasciculatus_S2_contig9295.17348.1 ID=mRNA_E_fasciculatus_S2_contig9295.17348.1|Name=mRNA_E_fasciculatus_S2_contig9295.17348.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=192bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9295:5047..5238+ (Ectocarpus fasciculatus EfasUO2)
GCTTCGCGTTGCGACTCTCCGTCTGCAGACAAACCCAGCTGCCGTCCGTG
GGACTACGAGGGCTTCAAGGCCAGGCTGGCGACCTTCACACCGCTCAACT
GGTTTTCCAAACCGGCCTTCGCGTCCCCGGCGGTATGCGCCCGCTACGGG
TGGATCAACACTGGACGGGACACGCTTTCGTGCCAGTGGTGA
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