mRNA_E_fasciculatus_S2_contig9287.17339.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9287.17339.1
Unique NamemRNA_E_fasciculatus_S2_contig9287.17339.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9287.17339.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSG3_ECTSI)

HSP 1 Score: 328 bits (840), Expect = 1.290e-103
Identity = 256/324 (79.01%), Postives = 270/324 (83.33%), Query Frame = 1 
Query:    1 MAMLPEPLDTGSADANALRPAPLDAYSPPAPFGALASPSSGSSKTPGRGMEELNFPTEEEGDFSKASHAYQKRFENGGPLMMENDVHEPERGAGYGVDNFSAGSSNKTEAEAGAIAGXXXXXXXXXXXXXXXXXXX---AKYANHGYRGGSGGSNGSVAGSRAAEGSGSRLVAAAAREILVPPTPPGLERKPSKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRLGPRSPVPPRSAGRARARSVDDAGGGRSRRDERPPRQSLDGTSVSFMKTPTSARVMVGSYFMGETGGEEKDGGDAFAAGSANE 963
            MAMLPEPL TGS+DANA RPAPLD YSP AP+GAL SPSSGSSKTPG GMEELNF T EEGDFSK         ENG  L+MEN VHEPERGAGYGV + SAGS             XXXXXXXXXXXXXXXXX     AKY NHG++GGSGGSNGSVAG+R+AEGSGSRLVAAAARE+LVPPTPPGLERKPSKG+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX     FR GPRSPVPPRSAGRARARSVD AGGGRSRR+ER PRQSLDGTS  FMKTPTSARV VGSYF+GE+GGEEKDGGDA  AGSA+E
Sbjct:    1 MAMLPEPLGTGSSDANAPRPAPLDTYSPSAPYGALTSPSSGSSKTPGHGMEELNFSTAEEGDFSK---------ENGDALIMENGVHEPERGAGYGVHSVSAGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAPSVAKYVNHGHKGGSGGSNGSVAGNRSAEGSGSRLVAAAAREMLVPPTPPGLERKPSKGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----FRPGPRSPVPPRSAGRARARSVDHAGGGRSRREERLPRQSLDGTSAYFMKTPTSARVTVGSYFVGESGGEEKDGGDASVAGSAHE 310
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BLAST of mRNA_E_fasciculatus_S2_contig9287.17339.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L8Q6_9PHAE)

HSP 1 Score: 279 bits (714), Expect = 2.420e-85
Identity = 236/378 (62.43%), Postives = 248/378 (65.61%), Query Frame = 1 
Query:  223 ENGGPLMMENDVHEPERGAGYGVDNFSAGSSNKTEAEAGA---------IAGXXXXXXXXXXXXXXXXXXXAKYANHGYRGGSGGSNGSVAGSRAAEGSGSRLVAAAAREILVPPTPPGLERKPSKGSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFRLGPRSPVPPRSAGRARARSVDDAGGGRSRRDERPPRQSLDGTSVSFMKTPTSARVMVGSYFMGETGGEEKDGGDAFAAGSANEEXXXXXXXXXXXXXXXXXXXXXXXXXPSRTGMHGGDHKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDXXRSPGLKXXXXXXXXXXSDFAIVVGEGSRGREGSGVFGIGPNGE 1329
            ENG  LM  N VHEPERGAGYGVD+ SAGSS+ TEAEAGA            XXXXXXXXXXXXXXXX   A Y NHG+RGGSGG NG VAG R+AEGSGSRLVAAAA E+LV PTPPGLERKPSKG+                               XXXXXXXX    FR GPRSPVPPRSAGRARARSVD AGGGRSRR+ERPPRQSLDGTSV FMKTPTSARV VGSYF+GE+GGEEK G DAF AGSA EE     XXXXXXXXXXXX         SRTGMHGGD+K                                    XX X RSPG KXXXXXXXXXX D AIV GEGSRGREG+ V G+GPNGE
Sbjct:   15 ENGDALMTANGVHEPERGAGYGVDSVSAGSSSNTEAEAGARXXXXXXXXXXXXXXXXXXXXXXXXXXXPSVANYVNHGHRGGSGGRNGVVAGDRSAEGSGSRLVAAAALEMLVSPTPPGLERKPSKGAGSGGWYGGGQTPRTRGRLLRSSSRAEPSPRSXXXXXXXX----FRPGPRSPVPPRSAGRARARSVDHAGGGRSRREERPPRQSLDGTSVYFMKTPTSARVTVGSYFVGESGGEEKGGSDAFVAGSAPEERAPSAXXXXXXXXXXXXPSSL-----SRTGMHGGDNKTSPNPLVQEEGGAGGGPSPGGGVEFGGDGSGGSLAAXXXXGRSPGRKXXXXXXXXXXXDVAIVAGEGSRGREGNEVLGVGPNGE 383
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9287.17339.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.290e-10379.01protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.420e-8562.43protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9287contigE_fasciculatus_S2_contig9287:27..1765 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1329
Hectar predicted targeting categoryother localisation
Exons2
Cds size1329
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842577.843801-CDS-E_fasciculatus_S2_contig9287:26..11331696842577.843801-CDS-E_fasciculatus_S2_contig9287:26..1133Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9287 27..1133 -
1696842577.855102-CDS-E_fasciculatus_S2_contig9287:1543..17651696842577.855102-CDS-E_fasciculatus_S2_contig9287:1543..1765Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9287 1544..1765 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9287.17339.1prot_E_fasciculatus_S2_contig9287.17339.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9287 27..1765 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9287.17339.1

>prot_E_fasciculatus_S2_contig9287.17339.1 ID=prot_E_fasciculatus_S2_contig9287.17339.1|Name=mRNA_E_fasciculatus_S2_contig9287.17339.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=443bp
MAMLPEPLDTGSADANALRPAPLDAYSPPAPFGALASPSSGSSKTPGRGM
EELNFPTEEEGDFSKASHAYQKRFENGGPLMMENDVHEPERGAGYGVDNF
SAGSSNKTEAEAGAIAGAGAAAGPGAAPTSAAAPSAAKYANHGYRGGSGG
SNGSVAGSRAAEGSGSRLVAAAAREILVPPTPPGLERKPSKGSGGWYGGG
QTPRRRGNLLRSSSRAEPSPRSGGGGGGGGGGGGGGFRLGPRSPVPPRSA
GRARARSVDDAGGGRSRRDERPPRQSLDGTSVSFMKTPTSARVMVGSYFM
GETGGEEKDGGDAFAAGSANEERAPSASSFMSSSSSSSSSSSSSSSSPSR
TGMHGGDHKSSPHPPVQGAGGAGGGPSPGGGVEFGGGGSGGSSAAGGDGG
RSPGLKGGGGAGARGGSDFAIVVGEGSRGREGSGVFGIGPNGE
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mRNA from alignment at E_fasciculatus_S2_contig9287:27..1765-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9287.17339.1 ID=mRNA_E_fasciculatus_S2_contig9287.17339.1|Name=mRNA_E_fasciculatus_S2_contig9287.17339.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1739bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9287:27..1765- (Ectocarpus fasciculatus EfasUO2)
ATGGCAATGTTGCCGGAGCCGCTAGACACGGGATCGGCGGACGCCAACGC
TCTGCGGCCGGCGCCGTTGGACGCGTATTCGCCGCCAGCGCCGTTTGGGG
CGCTAGCCAGCCCGAGCTCTGGCTCGAGCAAGACTCCGGGGCGCGGTATG
GAAGAATTGAACTTTCCGACGGAAGAAGAGGGAGACTTCTCAAAGGCAAG
CCATGCGTACCAGAAGCGTTTTGTTTTTGCGCTCTTCGGATGTCCGCTTG
TAGCAGTATTGTTGTTGTTGATGTCTTCGTGTTTCGAAGATGGTGGCCGC
CTGCAGAATACGATTGCGCTCCCGCTGGCCGAGAATTTGGTGTGTTTGTT
TGTATCAGAGGGGTTTCCCAGCTCCTCGTGGCTTTTGTGGTGCAGGAGTT
GCCAAGCGTCACTCCCGGCGCTCCGCTGCTGTGGACGAAATAATAGCATT
CGACCGATTCTTCTAGTTTTTTTGTTTTGTTCCGGTTGCTGTACAACTTT
CATCAGGTGCTACAGACGGCATGCGTTGTCTCGAACGAGGACCCCGTCTC
TCCCATCACCGCGGACTGTCCTTCTTACCCTCCCCCCGCGATGTGTTTCC
GTCTTCTTGGCGCTTTGTGCTCGCTGCCCCAGGAGAACGGAGGTCCCCTG
ATGATGGAGAATGACGTACACGAGCCGGAACGCGGGGCGGGCTATGGGGT
TGATAATTTCTCGGCTGGAAGCAGCAACAAAACGGAAGCGGAAGCAGGAG
CAATAGCAGGAGCGGGCGCTGCAGCAGGACCTGGAGCAGCACCAACATCA
GCAGCAGCGCCGAGCGCTGCGAAGTACGCCAATCACGGCTACAGAGGTGG
TAGCGGTGGCAGCAACGGCAGCGTTGCCGGTAGCCGGGCGGCCGAGGGAA
GCGGTAGTAGACTAGTAGCAGCAGCCGCTCGGGAGATTCTCGTCCCGCCA
ACTCCGCCGGGGTTGGAGAGAAAACCATCCAAGGGGTCGGGGGGTTGGTA
CGGCGGAGGCCAGACTCCCCGAAGACGAGGAAACCTTTTGCGCTCGTCCA
GCCGCGCAGAGCCGAGCCCACGTAGCGGCGGCGGCGGCGGCGGCGGCGGC
GGCGGTGGTGGTGGTGGTTTCAGACTGGGGCCAAGAAGCCCGGTTCCGCC
ACGTAGCGCGGGGAGGGCGAGGGCACGCAGCGTTGACGATGCTGGGGGTG
GTAGGAGCCGACGAGACGAGCGGCCACCGCGGCAGTCGCTCGACGGCACG
TCGGTGTCCTTCATGAAGACCCCGACGTCGGCGCGCGTGATGGTCGGGTC
GTACTTCATGGGCGAAACCGGCGGCGAGGAGAAGGACGGGGGCGACGCTT
TTGCTGCTGGCAGCGCAAACGAGGAGCGAGCGCCGTCGGCATCGTCCTTC
ATGTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCGTC
GCCGTCGAGAACGGGAATGCACGGCGGGGACCACAAGAGCTCGCCCCATC
CCCCGGTACAAGGAGCAGGGGGCGCCGGCGGTGGCCCAAGCCCGGGGGGA
GGGGTGGAGTTTGGGGGCGGCGGCAGCGGTGGTAGTTCGGCCGCAGGGGG
CGACGGGGGGCGGTCACCAGGGCTCAAGGGGGGCGGCGGAGCGGGGGCTA
GGGGGGGGAGCGACTTCGCCATCGTCGTTGGGGAAGGGTCGAGGGGGAGA
GAAGGGAGCGGGGTTTTTGGGATTGGGCCGAACGGGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9287:27..1765-

>mRNA_E_fasciculatus_S2_contig9287.17339.1 ID=mRNA_E_fasciculatus_S2_contig9287.17339.1|Name=mRNA_E_fasciculatus_S2_contig9287.17339.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1329bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9287:27..1765- (Ectocarpus fasciculatus EfasUO2)
ATGGCAATGTTGCCGGAGCCGCTAGACACGGGATCGGCGGACGCCAACGC
TCTGCGGCCGGCGCCGTTGGACGCGTATTCGCCGCCAGCGCCGTTTGGGG
CGCTAGCCAGCCCGAGCTCTGGCTCGAGCAAGACTCCGGGGCGCGGTATG
GAAGAATTGAACTTTCCGACGGAAGAAGAGGGAGACTTCTCAAAGGCAAG
CCATGCGTACCAGAAGCGTTTTGAGAACGGAGGTCCCCTGATGATGGAGA
ATGACGTACACGAGCCGGAACGCGGGGCGGGCTATGGGGTTGATAATTTC
TCGGCTGGAAGCAGCAACAAAACGGAAGCGGAAGCAGGAGCAATAGCAGG
AGCGGGCGCTGCAGCAGGACCTGGAGCAGCACCAACATCAGCAGCAGCGC
CGAGCGCTGCGAAGTACGCCAATCACGGCTACAGAGGTGGTAGCGGTGGC
AGCAACGGCAGCGTTGCCGGTAGCCGGGCGGCCGAGGGAAGCGGTAGTAG
ACTAGTAGCAGCAGCCGCTCGGGAGATTCTCGTCCCGCCAACTCCGCCGG
GGTTGGAGAGAAAACCATCCAAGGGGTCGGGGGGTTGGTACGGCGGAGGC
CAGACTCCCCGAAGACGAGGAAACCTTTTGCGCTCGTCCAGCCGCGCAGA
GCCGAGCCCACGTAGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGTGGTG
GTGGTGGTTTCAGACTGGGGCCAAGAAGCCCGGTTCCGCCACGTAGCGCG
GGGAGGGCGAGGGCACGCAGCGTTGACGATGCTGGGGGTGGTAGGAGCCG
ACGAGACGAGCGGCCACCGCGGCAGTCGCTCGACGGCACGTCGGTGTCCT
TCATGAAGACCCCGACGTCGGCGCGCGTGATGGTCGGGTCGTACTTCATG
GGCGAAACCGGCGGCGAGGAGAAGGACGGGGGCGACGCTTTTGCTGCTGG
CAGCGCAAACGAGGAGCGAGCGCCGTCGGCATCGTCCTTCATGTCTTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTTCGTCGCCGTCGAGA
ACGGGAATGCACGGCGGGGACCACAAGAGCTCGCCCCATCCCCCGGTACA
AGGAGCAGGGGGCGCCGGCGGTGGCCCAAGCCCGGGGGGAGGGGTGGAGT
TTGGGGGCGGCGGCAGCGGTGGTAGTTCGGCCGCAGGGGGCGACGGGGGG
CGGTCACCAGGGCTCAAGGGGGGCGGCGGAGCGGGGGCTAGGGGGGGGAG
CGACTTCGCCATCGTCGTTGGGGAAGGGTCGAGGGGGAGAGAAGGGAGCG
GGGTTTTTGGGATTGGGCCGAACGGGGAG
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