mRNA_E_fasciculatus_S2_contig9282.17337.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: Glyco_hydro_114 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5LHX0_9PHAE) HSP 1 Score: 276 bits (707), Expect = 3.170e-90 Identity = 155/186 (83.33%), Postives = 164/186 (88.17%), Query Frame = 1
Query: 1 QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKAVLDAEFAVEDLSLCNDTLWHPIDFIVKGYSLDEQRCSCGFPETDYECEELLAAHAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEGEGAPTWVIVTAIAMAVLAGMMAYGAVVWRRRRGKRVKAEGVDDFCD 558
QAHARNLSVGLKNDRLQM ELEPWFDWALSTDCYDE+DCGSY PFVTAGKAVLDAEFAV+DL LCNDTLWHPIDFIVK Y LDEQRCSCGFPET++EC+E+LA HA XXXXXXXXXXXXXXXXXXXXX G+G PTWVIVTAIA+AVLAGMMAYGA+VWRRRRGK K EGVDDFCD
Sbjct: 168 QAHARNLSVGLKNDRLQMEELEPWFDWALSTDCYDEEDCGSYGPFVTAGKAVLDAEFAVQDLGLCNDTLWHPIDFIVKSYELDEQRCSCGFPETNFECDEVLAGHASXXXXXXXXXXXXXXXXXXXXXGTDDSGEGQG-GDGTPTWVIVTAIAVAVLAGMMAYGAMVWRRRRGKDKKVEGVDDFCD 352
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: Glyco_hydro_114 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K149_9PHAE) HSP 1 Score: 118 bits (295), Expect = 4.720e-29 Identity = 57/103 (55.34%), Postives = 74/103 (71.84%), Query Frame = 1
Query: 1 QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAP-FVTAGKAVLDAEFAVEDLSLCNDTLWHPIDFIVKGYSLDEQRCSCGFPETDYECEELL 306
QAH RNLSVGL+ND LQ+ +LEP FDWALS DC + +CG+Y P F++AGKAVLD E+ DL+ C++ +D I+K SLD +RCSC P T +C+ELL
Sbjct: 120 QAHDRNLSVGLRNDWLQLDDLEPSFDWALSEDCLFQGECGAYEPNFISAGKAVLDVEYFQFDLAFCDNVTASGLDIIIKDLSLDARRCSCQNPSTHIDCDELL 222
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: Glyco_hydro_114 (domain-containing protein n=1 Tax=Chloroflexi bacterium RBG_19FT_COMBO_55_16 TaxID=1797669 RepID=A0A1F8SXS9_9CHLR) HSP 1 Score: 84.7 bits (208), Expect = 1.680e-16 Identity = 42/89 (47.19%), Postives = 54/89 (60.67%), Query Frame = 1
Query: 1 QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKAVLDAEFAVEDLSLCNDTLWHPIDFIVKGYSLDEQRCSC 267
QAHAR LSVGLKND Q+ L P+FDWAL+ C+ +CG+ PFV AGKAV E+ +E + C DF+ K + LD R +C
Sbjct: 184 QAHARWLSVGLKNDLDQVEVLLPYFDWALNEQCFQYNECGTLLPFVHAGKAVFGVEYELEQEAFCPQANAMDFDFLKKRWELDAWRVAC 272
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: MCPVI (and Glyco_hydro_114 domain-containing protein n=1 Tax=Ktedonobacteria bacterium brp13 TaxID=2717365 RepID=A0A7I8EST7_9CHLR) HSP 1 Score: 84.0 bits (206), Expect = 7.870e-16 Identity = 41/89 (46.07%), Postives = 53/89 (59.55%), Query Frame = 1
Query: 1 QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKAVLDAEFAVEDLSLCNDTLWHPIDFIVKGYSLDEQRCSC 267
QAHARNLSVGLKND Q+ +L P+FDWAL C++ +C PFV AGK V+D E+ V + C+ I+ K +LD R C
Sbjct: 262 QAHARNLSVGLKNDTDQVAQLLPYFDWALDEQCFEYNECDLLLPFVNAGKPVMDVEYNVNTANFCSQANSMNINAQKKSLNLDAPRTLC 350
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase n=1 Tax=Chloroflexi bacterium TaxID=2026724 RepID=A0A7C2TI21_9CHLR) HSP 1 Score: 82.8 bits (203), Expect = 9.120e-16 Identity = 41/89 (46.07%), Postives = 52/89 (58.43%), Query Frame = 1
Query: 1 QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKAVLDAEFAVEDLSLCNDTLWHPIDFIVKGYSLDEQRCSC 267
QAHAR LSVGLKND Q+ +L P FDWAL+ C+ +C PFV AGKAV E+ +E C + D++ K + LD R SC
Sbjct: 187 QAHARGLSVGLKNDMDQVTQLLPAFDWALNEQCFQYNECHLLVPFVQAGKAVFGVEYELEPAEFCLQAIAMNFDWLRKKWELDAWRRSC 275
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: endo (alpha-1,4 polygalactosaminidase n=1 Tax=Desulfogranum japonicum TaxID=231447 RepID=UPI001969C6AE) HSP 1 Score: 82.4 bits (202), Expect = 1.150e-15 Identity = 39/88 (44.32%), Postives = 53/88 (60.23%), Query Frame = 1
Query: 4 AHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKAVLDAEFAVEDLSLCNDTLWHPIDFIVKGYSLDEQRCSC 267
AHARNLS+GLKND Q+ +L +FDWAL+ C+ +C PFV AGKAV E+++ + C+ D++ K SLD R SC
Sbjct: 181 AHARNLSIGLKNDLDQVQDLVSYFDWALNEQCFQYDECDLLLPFVQAGKAVFGVEYSLSTTTFCSQANSMNFDWLKKNLSLDSWRVSC 268
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase n=3 Tax=unclassified Chloroflexi TaxID=189774 RepID=A0A1F8TQJ7_9CHLR) HSP 1 Score: 80.1 bits (196), Expect = 9.720e-15 Identity = 39/88 (44.32%), Postives = 51/88 (57.95%), Query Frame = 1
Query: 4 AHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKAVLDAEFAVEDLSLCNDTLWHPIDFIVKGYSLDEQRCSC 267
AHAR LS+GLKND Q+ +L P FDWALS +C+ +C PF+TAGKAVL E+ + C + + KG+ LD R C
Sbjct: 194 AHARGLSIGLKNDLDQVADLLPLFDWALSEECFAYDECDLLVPFITAGKAVLHVEYELSTRKFCAEARQLGFSSMRKGWDLDASREVC 281
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase n=1 Tax=Polyangiaceae bacterium TaxID=2268199 RepID=A0A850BX18_9DELT) HSP 1 Score: 79.7 bits (195), Expect = 1.030e-14 Identity = 42/92 (45.65%), Postives = 56/92 (60.87%), Query Frame = 1
Query: 1 QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAP-FVTAGKAVLDAEFAVEDL--SLCNDTLWHPIDFIVKGYSLDEQRCSC 267
+AHAR LSVGLKND Q+ ELEP FDWAL+ +C+ +C Y+P F+ AGKAV AE+ E + +C T + ++K LD R C
Sbjct: 169 EAHARGLSVGLKNDLDQLAELEPHFDWALNEECFTYSECDLYSPTFIAAGKAVFHAEYVGESMLNEVCVITKPLQLSTLIKHIELDAYRVPC 260
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase (Fragment) n=1 Tax=Gammaproteobacteria bacterium TaxID=1913989 RepID=A0A3M2D3V9_9GAMM) HSP 1 Score: 75.5 bits (184), Expect = 1.550e-14 Identity = 36/89 (40.45%), Postives = 51/89 (57.30%), Query Frame = 1
Query: 1 QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKAVLDAEFAVEDLSLCNDTLWHPIDFIVKGYSLDEQRCSC 267
+AHAR LS+GLKND Q+ +L P FDWAL+ +C+ +C PFV + KAV E+ + C DF+ K ++LD R +C
Sbjct: 13 EAHARGLSIGLKNDLDQIPDLLPDFDWALNEECFTYGECSLLTPFVQSNKAVFGVEYDLNTADFCPQANAMNFDFLKKHWALDAWRAAC 101
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thermoflexales bacterium TaxID=2497639 RepID=UPI001AD009B8) HSP 1 Score: 78.6 bits (192), Expect = 3.380e-14 Identity = 42/92 (45.65%), Postives = 55/92 (59.78%), Query Frame = 1
Query: 1 QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKAVLDAEFAVEDLS---LCNDTLWHPIDFIVKGYSLDEQRCSC 267
+AHAR LS+GLKND Q+ EL P+FDWAL+ DC+D+ C PFVTAGKAV AE+ ++ C + I+K LD R +C
Sbjct: 184 EAHARGLSIGLKNDPDQVAELLPYFDWALTEDCFDQGWCDQLTPFVTAGKAVFAAEYTDTGMTTGQFCPQANALNFNGILKHRELDAWRQAC 275 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9282.17337.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9282.17337.1 >prot_E_fasciculatus_S2_contig9282.17337.1 ID=prot_E_fasciculatus_S2_contig9282.17337.1|Name=mRNA_E_fasciculatus_S2_contig9282.17337.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=187bp QAHARNLSVGLKNDRLQMVELEPWFDWALSTDCYDEQDCGSYAPFVTAGKback to top mRNA from alignment at E_fasciculatus_S2_contig9282:2818..5869- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9282.17337.1 ID=mRNA_E_fasciculatus_S2_contig9282.17337.1|Name=mRNA_E_fasciculatus_S2_contig9282.17337.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3052bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9282:2818..5869- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9282:2818..5869- >mRNA_E_fasciculatus_S2_contig9282.17337.1 ID=mRNA_E_fasciculatus_S2_contig9282.17337.1|Name=mRNA_E_fasciculatus_S2_contig9282.17337.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=561bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9282:2818..5869- (Ectocarpus fasciculatus EfasUO2)back to top |