mRNA_E_fasciculatus_S2_contig9281.17336.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9281.17336.1
Unique NamemRNA_E_fasciculatus_S2_contig9281.17336.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9281.17336.1 vs.
Match: BEACH (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG8_ECTSI)

HSP 1 Score: 166 bits (419), Expect = 7.390e-46
Identity = 77/80 (96.25%), Postives = 77/80 (96.25%), Query Frame = 1 
Query:    1 KGAPPLTAFSLSGCGEGTTPPLDDSEWDEVSPVESGCLSAPDDQQLTACYGGGVVHFDCRQGRSGGTVQDLFPVAQWDVD 240
            KGAPPLTAFSLSGCGEGTTPPLDDSEWDEVSP ESGC SAPDDQQLTA YGGGVVHFDCRQGRSGGTVQDLFPVAQWDVD
Sbjct: 2378 KGAPPLTAFSLSGCGEGTTPPLDDSEWDEVSPGESGCFSAPDDQQLTASYGGGVVHFDCRQGRSGGTVQDLFPVAQWDVD 2457
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BLAST of mRNA_E_fasciculatus_S2_contig9281.17336.1 vs.
Match: BEACH (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG5_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 4.190e-44
Identity = 73/80 (91.25%), Postives = 76/80 (95.00%), Query Frame = 1 
Query:    1 KGAPPLTAFSLSGCGEGTTPPLDDSEWDEVSPVESGCLSAPDDQQLTACYGGGVVHFDCRQGRSGGTVQDLFPVAQWDVD 240
            KGAPPLTAFSLSGCGEGTTPPLDDSEWD+VSP ESGC SAPDDQQ+TA YGGGVVHFDCRQGRSGGT QD+FPVAQWDVD
Sbjct: 2482 KGAPPLTAFSLSGCGEGTTPPLDDSEWDKVSPGESGCFSAPDDQQITASYGGGVVHFDCRQGRSGGTAQDVFPVAQWDVD 2561
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9281.17336.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
BEACH7.390e-4696.25domain-containing protein n=1 Tax=Ectocarpus silic... [more]
BEACH4.190e-4491.25domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9281contigE_fasciculatus_S2_contig9281:4028..4941 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score167.5
Seed ortholog evalue2.5e-39
Seed eggNOG ortholog2880.D8LHG8
Model size241
KEGG koko:K17601
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.aggrephagy
EggNOG OGsKOG1786@1,KOG1786@2759
Cds size240
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842577.6462715-CDS-E_fasciculatus_S2_contig9281:4028..40891696842577.6462715-CDS-E_fasciculatus_S2_contig9281:4028..4089Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9281 4029..4089 -
1696842577.6605947-CDS-E_fasciculatus_S2_contig9281:4762..49411696842577.6605947-CDS-E_fasciculatus_S2_contig9281:4762..4941Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9281 4763..4941 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9281.17336.1prot_E_fasciculatus_S2_contig9281.17336.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9281 4029..4941 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9281.17336.1

>prot_E_fasciculatus_S2_contig9281.17336.1 ID=prot_E_fasciculatus_S2_contig9281.17336.1|Name=mRNA_E_fasciculatus_S2_contig9281.17336.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=80bp
KGAPPLTAFSLSGCGEGTTPPLDDSEWDEVSPVESGCLSAPDDQQLTACY
GGGVVHFDCRQGRSGGTVQDLFPVAQWDVD
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mRNA from alignment at E_fasciculatus_S2_contig9281:4028..4941-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9281.17336.1 ID=mRNA_E_fasciculatus_S2_contig9281.17336.1|Name=mRNA_E_fasciculatus_S2_contig9281.17336.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=914bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9281:4028..4941- (Ectocarpus fasciculatus EfasUO2)
AAGGGCGCGCCCCCGCTGACGGCGTTCTCGCTGAGCGGGTGCGGGGAAGG
AACCACCCCCCCGCTGGACGACTCGGAGTGGGACGAGGTGTCTCCTGTGG
AGAGCGGTTGCTTGTCCGCTCCTGACGACCAGCAGCTAACGGCTTGCTAC
GGGGGGGGCGTCGTGCACTTTGACTGCAGGTGTGGCACGATTGAACGGAA
GTATGTCAAAGTAGTTGTGCTTTTTTTTTTGTTCGAGCGTGAGCTGTGGC
TTTGCTGCCTGTTTGGCAGTTTCACGTTCTTGTGGCTACAGGGTGCGTGT
TGCGGCATAGAGCTGAGCATGGCTGTGGCTGCGGAGCTGTCACAACTTGT
GCAGTGACTGCTTCAGGCAGTTGTCTGACAGTCAACTACCGTGTGGAAAA
ATTGCTATTCAAATAGTTGTCTCCCACACGAATACCGCATGAAGAGTTGT
GCACATACCAGGTGATTGTCTGCAGAAAATTACCGGGTGCATATCATGGC
GGCCACGCACCACAAATAGCTACTGCCGTTGGATGCTGCAATGGTACATG
CACAGACGAACATCATGGGCTAGTTGTGTCAGACACATGAAAGCACGGCA
ATTGCTGCAGTCCCGCGAGCCCGGTATAGAGTCGAGGACCGAGACCCGCT
CACGGGTGTACTCCCCGCGGATAATGGCGTCTCGTTGTATTCACGATACA
AGACTATGCCACCCCCCCCACACACACACCTCTCTAAGTTCCTCTTGGTC
TATCCCCTGTCTCTGATGCCGTCGAGGTTAAACTGTTTGTTTTGGCGCCT
TATTTTCTTGCTGGCCCTGGCTGCTCTGTTCTGTTGCCTTGAAATTGTCC
AGGCAAGGTCGATCGGGTGGTACGGTGCAGGACCTCTTTCCGGTGGCGCA
GTGGGACGTGGACG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9281:4028..4941-

>mRNA_E_fasciculatus_S2_contig9281.17336.1 ID=mRNA_E_fasciculatus_S2_contig9281.17336.1|Name=mRNA_E_fasciculatus_S2_contig9281.17336.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=240bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9281:4028..4941- (Ectocarpus fasciculatus EfasUO2)
AAGGGCGCGCCCCCGCTGACGGCGTTCTCGCTGAGCGGGTGCGGGGAAGG
AACCACCCCCCCGCTGGACGACTCGGAGTGGGACGAGGTGTCTCCTGTGG
AGAGCGGTTGCTTGTCCGCTCCTGACGACCAGCAGCTAACGGCTTGCTAC
GGGGGGGGCGTCGTGCACTTTGACTGCAGGCAAGGTCGATCGGGTGGTAC
GGTGCAGGACCTCTTTCCGGTGGCGCAGTGGGACGTGGAC
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