mRNA_E_fasciculatus_S2_contig9281.17335.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9281.17335.1
Unique NamemRNA_E_fasciculatus_S2_contig9281.17335.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9281.17335.1 vs.
Match: BEACH (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHG8_ECTSI)

HSP 1 Score: 203 bits (517), Expect = 4.580e-58
Identity = 111/129 (86.05%), Postives = 120/129 (93.02%), Query Frame = -1 
Query:   16 GDGGYGEASPVRVSTAFGLPDASPGLSPATVLMLPLPPPPASPSNRLPGAGASSMFGDSFSAPGRAGG-AGARIQREKLPVLFAASGDKMVASVVRREPDAGGQEEEVHPARFLGPSGKTVKSKKGGVG 399
            G+GG+GEASPVRVSTAFGLPDA+PGLSPA VLMLPLPPPPA PSNRL GAG SS+FG+SFSA GRAGG AGARI+REKLPVLFAASGD+MVASVVRREPDA  +EEEVHPARFLGP+GKTVK KKGGVG
Sbjct: 2608 GEGGHGEASPVRVSTAFGLPDAAPGLSPAAVLMLPLPPPPARPSNRLAGAGVSSVFGESFSASGRAGGGAGARIRREKLPVLFAASGDRMVASVVRREPDARRREEEVHPARFLGPAGKTVKGKKGGVG 2736
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BLAST of mRNA_E_fasciculatus_S2_contig9281.17335.1 vs.
Match: BEACH (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNG5_9PHAE)

HSP 1 Score: 191 bits (485), Expect = 9.350e-54
Identity = 109/133 (81.95%), Postives = 118/133 (88.72%), Query Frame = -1 
Query:    4 GDGGYGEASPVRVSTAFGLPDASPGLSPATVLMLPLPPPPASPSNRLPGAGASSMFGDSFSAPGRAGG-AGARIQREKLPVLFAASGDKMVASVVRREPDAGGQEEEVHPARFLGPSGKTVKSKKGGVGGGGG 399
            G+GGYGEASPVRVSTAFGLPDA+PGLSPATVLMLPL PPP  P NRL GAG S +FG+SFSA GRAGG A AR+QREKLPVLFAASGD+MVASVVR EPDA G+EE +HPARFLGP+GKTVK KKGGVG GGG
Sbjct: 2711 GEGGYGEASPVRVSTAFGLPDAAPGLSPATVLMLPLSPPPTPPINRLAGAGIS-LFGESFSASGRAGGGAEARLQREKLPVLFAASGDRMVASVVRLEPDARGREEGLHPARFLGPAGKTVKGKKGGVGSGGG 2842
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9281.17335.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
BEACH4.580e-5886.05domain-containing protein n=1 Tax=Ectocarpus silic... [more]
BEACH9.350e-5481.95domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9281contigE_fasciculatus_S2_contig9281:2121..2526 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size406
Hectar predicted targeting categorymitochondrion
Exons1
Cds size405
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842577.5992315-CDS-E_fasciculatus_S2_contig9281:2120..25251696842577.5992315-CDS-E_fasciculatus_S2_contig9281:2120..2525Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9281 2121..2525 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9281.17335.1prot_E_fasciculatus_S2_contig9281.17335.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9281 2121..2525 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9281.17335.1

>prot_E_fasciculatus_S2_contig9281.17335.1 ID=prot_E_fasciculatus_S2_contig9281.17335.1|Name=mRNA_E_fasciculatus_S2_contig9281.17335.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=135bp
PAAATADTTLLALHRLPRRAQKPRRVHFFLLPPCVWLSTHDARDHLIAGR
GEQHGQLFSLYSRSRAAGSPRRRKTVSEHGRSPSAWQPVAGRRRGRGQRE
HEDGGRGQPGRGVRQPERSGNPHRGCFPVAPVSAA
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mRNA from alignment at E_fasciculatus_S2_contig9281:2121..2526+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9281.17335.1 ID=mRNA_E_fasciculatus_S2_contig9281.17335.1|Name=mRNA_E_fasciculatus_S2_contig9281.17335.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=406bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9281:2121..2526+ (Ectocarpus fasciculatus EfasUO2)
CCCGCCGCCGCCACCGCCGACACCACCCTTCTTGCTCTTCACCGTCTTCC
CCGACGGGCCCAAAAACCTCGCCGGGTGCACTTCTTCCTCCTGCCCCCCT
GCGTCTGGCTCTCGACGCACGACGCTCGCGACCATCTTATCGCCGGACGC
GGCGAACAGCACGGGCAGCTTTTCTCTCTGTATTCTCGCTCCCGCGCCGC
CGGCTCTCCCCGGCGCCGAAAAACTGTCTCCGAACATGGAAGAAGCCCCA
GCGCCTGGCAGCCTGTTGCTGGGCGACGCCGGGGGAGGGGGCAGAGGGAG
CATGAGGACGGTGGCCGGGGACAGCCCGGGCGAGGCGTCCGGCAACCCGA
ACGCAGTGGAAACCCGCACCGGGGATGCTTCCCCGTAGCCCCCGTCTCCG
CTGCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9281:2121..2526+

>mRNA_E_fasciculatus_S2_contig9281.17335.1 ID=mRNA_E_fasciculatus_S2_contig9281.17335.1|Name=mRNA_E_fasciculatus_S2_contig9281.17335.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=405bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9281:2121..2526+ (Ectocarpus fasciculatus EfasUO2)
CCCGCCGCCGCCACCGCCGACACCACCCTTCTTGCTCTTCACCGTCTTCC
CCGACGGGCCCAAAAACCTCGCCGGGTGCACTTCTTCCTCCTGCCCCCCT
GCGTCTGGCTCTCGACGCACGACGCTCGCGACCATCTTATCGCCGGACGC
GGCGAACAGCACGGGCAGCTTTTCTCTCTGTATTCTCGCTCCCGCGCCGC
CGGCTCTCCCCGGCGCCGAAAAACTGTCTCCGAACATGGAAGAAGCCCCA
GCGCCTGGCAGCCTGTTGCTGGGCGACGCCGGGGGAGGGGGCAGAGGGAG
CATGAGGACGGTGGCCGGGGACAGCCCGGGCGAGGCGTCCGGCAACCCGA
ACGCAGTGGAAACCCGCACCGGGGATGCTTCCCCGTAGCCCCCGTCTCCG
CTGCT
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