mRNA_E_fasciculatus_S2_contig9276.17330.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: Uncharacterized (protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GX11_VITBC) HSP 1 Score: 105 bits (261), Expect = 8.980e-22 Identity = 86/276 (31.16%), Postives = 133/276 (48.19%), Query Frame = 1
Query: 19 LALGSLC-LVAAHVADAKLHGR-TAWLPSLRLIFKHSETALTDFLSEIATRPFNHDHVGITAVQPPLRAPSSAPVVPKGFRVNARRQLLGTGSEARN*AVRVGLRERGIVNRLRWASMEVAEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAHWDRELPRLLGKGR-FSSLGFSTAVGHMIEGEERFSVEFRE--------------------------------QDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAFFAGQCREMLRLVAE 741
+AL +LC LV+ H + A R +A +P L++ +HS+ A+ D L I RP NH V T LR P+S+ + P + VN +R L+G G +A + A R L + I L W ++ + G + T K YGV + NPC Y D+ R G+ ++++G+ST GH++ GEERF+V + + + VW ++YS SR SGVLG++A +RP+Q+ F A +M VA+
Sbjct: 4 VALLNLCILVSPHASTAASGVRPSASIPMLKVGQRHSDDAIFDALGTIKGRPPNHPFVRGTL----LRYPTSS-MAPSSYMVNHKRFLIGHGEKAYHFASRALLSWQLINESLEWIRID---------RRGEAVTTCAKAYGVS-AINPCLYQYELIDQRAARPSGREVVYTAVGYSTVKGHLLAGEERFTVAWNQTPRKGGPVSRIFGLRKQRPANDSDSEGDGIESEKDGVWFEVYSYSRPSGVLGRLAAVAVRPLQRRFAADLAAKMPAYVAK 264
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: DUF1990 (domain-containing protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J6CD17_DIALT) HSP 1 Score: 94.0 bits (232), Expect = 2.080e-18 Identity = 60/155 (38.71%), Postives = 88/155 (56.77%), Query Frame = 1
Query: 241 PKGFRVNARRQLLGTGSEARN*AVRVGLRERGIVNRLRWASMEVAEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAHWDRELPRLLGKGRFSSLGFSTAVGHMIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAFFA 705
P ++ R ++G G EA + A R + +V + WA++ Q + L TVVKCY +WS NPCR+ + LG R S+L ++T GH++EGEE F V E+D V + + S+S+GSGVLGK+A+PFI PI++AF A
Sbjct: 55 PHHLQLCERAAVIGRGQEAYDRARRALAKGELLVG-VDWAAVHFLAQPA----VARDLATVVKCYRCVWSLNPCRVTHV--------ALGTTR-STLAYATLDGHLLEGEEAFDVRL-ERDGAVHVRVTSLSKGSGVLGKLAVPFIIPIRRAFLA 194
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: DUF1990 (domain-containing protein n=1 Tax=Pyrinomonadaceae bacterium TaxID=2283092 RepID=A0A7V9UWY9_9BACT) HSP 1 Score: 78.6 bits (192), Expect = 3.610e-13 Identity = 59/212 (27.83%), Postives = 93/212 (43.87%), Query Frame = 1
Query: 109 IFKHSETALTDFLSEIATRPFNHDHVGITAVQPPLRAPSSAPVVPKGFRVNARRQLLGTGSEARN*AVRVGLRERGIVNRLRWASMEVAEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAHWDRELPRLLGKGRFSSLGFSTAVGHMIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAFFAGQCREMLRLVAEK 744
+F+ S+ + +F++ PF++ VG +S +P G+ +N R LG G++A A + + RL W + + ++ V+ + S NPCR++Y L G F T GH EGEERF VE+R D +VW ++ S +R +L KI PF+ Q+ F R ML V +K
Sbjct: 7 LFEPSDEQIENFVAAQRDLPFSYREVG-----------ASQSRIPAGYPINHHRIQLGIGADAF--ARAKAALQSWTMYRLEWTHLYPINPPIAVGE----VVCVIANHRFCRSLNPCRIIYV-----LEEAGGAAERYGFAFGTLPGHSEEGEERFIVEWRRDDDSVWYEILSFARPHHILAKIGFPFVGLFQQKFGIDSKRAMLGAVKDK 196
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: DUF1990 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ57_ECTSI) HSP 1 Score: 80.5 bits (197), Expect = 4.440e-13 Identity = 64/248 (25.81%), Postives = 102/248 (41.13%), Query Frame = 1
Query: 166 PFNHDHVGITAVQPPLRAPSSAPVVPKGFRVNARRQLLGTGSE--ARN*AVRVGLRERGIVNRLRWASMEVAEQDSRRWKEGMGLLTVVK-CYGVLWSANPCRLVYAH----------------------------------------------------WDRELPRLLGKGRFSSLGFSTAVGHMIEGEERFSVEF---REQDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAFFAGQCREMLRLV 735
P NH G + + +GF+ R LG+G E AR R L + WA + + ++ R + L+T+ K C G++W NPC+++Y W LP + KGR S++ ++T +GH+I+GEER V D +VW ++YSVSRG+G++G + PF++ +Q+ FF Q M R+V
Sbjct: 48 PVNHAFAGFSDIAAAXXXXXXXXXXXQGFQERTVRAHLGSGKETYARG---REALLRWQMHEGSSWARIFLGQRPPRPALQ-RNLVTIAKACAGLVWCINPCQVLYERNDVALRFIAPPGADANRSLDDGEARPVENTKRVMGGGGGALWAGKRPTSAPSWASFLPGVKHKGRQSAVAYATKMGHLIQGEERMRVLHFCGPGGDDSVWFEVYSVSRGAGLVGGLVFPFVQSMQRRFFREQAETMKRVV 291
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XVY1_9STRA) HSP 1 Score: 70.5 bits (171), Expect = 5.710e-11 Identity = 38/88 (43.18%), Postives = 54/88 (61.36%), Query Frame = 1
Query: 496 PRLLGKGRFSSLGFSTAVGHMIEGEERFSVEFREQDS---TVWLDLYSVSRGSGV--LGKIAMPFIRPIQKAFFAGQCREMLRLVAEK 744
P L+ +S++ FST GH+++GEERF+VE+ + VW DL S+SRGSG + M ++P+Q+ FF Q R MLRL EK
Sbjct: 43 PTLIPTQIYSAVAFSTQKGHLLQGEERFAVEWHNAGNGPGEVWFDLRSISRGSGPFPIRSALMLAVKPLQRGFFTDQARTMLRLSEEK 130
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: DUF1990 (domain-containing protein (Fragment) n=8 Tax=Selaginella moellendorffii TaxID=88036 RepID=D8QTI1_SELML) HSP 1 Score: 71.2 bits (173), Expect = 5.960e-11 Identity = 48/157 (30.57%), Postives = 75/157 (47.77%), Query Frame = 1
Query: 244 KGFRVNARRQLLGTGSEARN*AVRVGLRERGIVN-----RLRWASMEVAEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAHWDRELPRLLGKGRFSSLGFSTAVGHMIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAF 699
+GF +N R +G G E +R + ++ +L WA + R G G V G+ W NP RL Y DRE R K ++ G T GH++ GEERFSVE+ ++D ++W +++S S+ + L P++R Q+ F
Sbjct: 6 QGFAINHSRVKIGHGQEE------AFIRAKNLLQDWRHFQLGWAFVPRETPIER----GQGF-NVCSKEGLFWIVNPLRLRYIRDDREQARKNNKIVYA-FGSGTLQGHLLAGEERFSVEWNKEDDSIWYEIFSFSKPAHFLSLATYPYVRFKQRLF 150
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: DUF1990 (domain-containing protein n=1 Tax=Betaproteobacteria bacterium TaxID=1891241 RepID=A0A521XCS0_9PROT) HSP 1 Score: 71.6 bits (174), Expect = 8.290e-11 Identity = 58/205 (28.29%), Postives = 92/205 (44.88%), Query Frame = 1
Query: 130 ALTDFLSEIATRPFNHDHVGITAVQPPLRAPSSAPVVPKGFRVNARRQLLGTGSEARN*AVRVGLRERGIVNRLRWASMEVAEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAHWDRELPRLLGKGRFSSLGFS--TAVGHMIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAFFAGQCREMLRLVA 738
A+ + L+++++ P+++ VG PV P G+ + R LLG G+ A + LR R + L W + + G + + GV W+ N CR+VY D KG GF+ T GH++ GEERF+VE+ D +VW + + SR +L ++ P +R +QK F M R A
Sbjct: 11 AICERLAQLSSAPYSYAEVGAL----------ENPVFPIGYLADRHRALLGRGAAGYERA-KAALR-RWEMFHLGWVRLYPSAPPIAA---GTSIGISARFLGV-WNLNFCRIVYTVED--------KGDVERFGFALGTLPGHILSGEERFTVEWHRADDSVWYHVCAFSRPDQLLSRLGYPIVRQLQKRFAKESHAAMARATA 191
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: Upf0548 (protein n=1 Tax=Tetraselmis sp. GSL018 TaxID=582737 RepID=A0A061RK60_9CHLO) HSP 1 Score: 72.0 bits (175), Expect = 9.270e-11 Identity = 63/217 (29.03%), Postives = 101/217 (46.54%), Query Frame = 1
Query: 136 TDFLSEIATRP-FNHDHVGITAVQPPLRAPSSAPVVPKGFRVNARRQLLGTGSEARN*AVRVGLRERGIVNRLR-----WASMEVAEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAH-WDRE-LPRLLG--------KGRFSSLGFSTAVGHMIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAFFAGQCREMLRLVA 738
TD +I +R FN++HVG T PPL P + + + V+ R LG+G V R + V R W S+E + K + VV ++W+ NP ++VY +RE L G + S GH++ GEERFSVE+ + D +VW ++Y+ S+ + +L K P +R +QK F + + M++ V+
Sbjct: 14 TDAAIDIGSRRGFNYEHVGSTYSAPPL--PDK--LRDQNWNVDHTRVKLGSGKM-------VYRRAKSAVQEWRHFQLGWTSVEPTTPILKDSK-----VCVVARALLVWTRNPLQIVYVREGNREVLSASAGPDGSPATTRAEVYSFAHGCLGGHLLAGEERFSVEWHKDDDSVWYEIYTFSKPAHLLSKATYPIVRGLQKKFGSDSAKAMMQEVS 214
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: Hypothetical (protein n=1 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0RDM0_9CHLO) HSP 1 Score: 71.6 bits (174), Expect = 1.260e-10 Identity = 59/216 (27.31%), Postives = 98/216 (45.37%), Query Frame = 1
Query: 109 IFKHSETALTDFLSEIATRPFNHDHVGITAVQPPLRAPSSAPVVPKGFRVNARRQLLGTGSEARN*AVRVGLRERGIVNRLRWASMEVAEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAHWDRELPRLLGKGRFSSL--------------GFSTAVGHMIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAFFAGQC 714
+F+ S+ + L + F + H G + PPL PS+ G++V+ R LG GS A R + +V + + A+ D+ E + V LW+ +P ++VY +L + GKG+ + G GHM+ GEERF+VE+ E+D +VW D+ + S+ +G L ++ P +R Q+ F QC
Sbjct: 6 LFRPSKETVKQTLQDGQKLGFCYPHQGASKDFPPL-PPSTTNY---GYKVDHNRVKLGHGSAAYE-------RAKKLVKKWEHFQLGWAQVDADTAIEEGSPVCVTAQVAFLWTRHPLQVVYVE---DLEKGKGKGKQPRIVSPAGKSCNARYTFGHGCLKGHMLAGEERFAVEWLEEDDSVWYDVAAFSKPAGPLSTLSYPLVRLFQRHF--AQC 205
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Match: DUF1990 (domain-containing protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6XAF0_MARPO) HSP 1 Score: 70.5 bits (171), Expect = 4.090e-10 Identity = 66/241 (27.39%), Postives = 101/241 (41.91%), Query Frame = 1
Query: 88 WLPSLRLIFKHSETALTDFLSEIATRPFNHDHVGITAVQPPLRAPSSAPVVPKGFRVNARRQLLGTGSEARN*AVRVGLRERGIVNRLRWASMEV--AEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAHWDRE-------------LPRLLG-KGRFSSLGFSTAVGHMIEGEERFSVEFREQDSTVWLDLYSVSRGSGVLGKIAMPFIRPIQKAFFAGQCREMLRLVAEKDM*MAG 762
W+P L L + S FLS ++ +VG T+ + P A + GF +N R LG+G+ A RG W +++ A D + G +V V W NP R+ Y ++E +P L + S G T GH++ GEERFS+E+ ++D +VW ++ S S+ + L P +R QK F M+R V DM + G
Sbjct: 2 WMPKLWLK-RPSAQEEKSFLSSCQAYNYDEKYVGATS-EAPWAADRLDQLKKDGFTINHARVKLGSGAHAF---------ARGKDKLQNWRHLQLGWASVDPTTPIKVGGKFGIVVHEMVAWLVNPLRIAYVSDEQEVTSKSLSANQAVDMPSLKSTSSKVYSFGGGTLQGHLLAGEERFSIEWDKEDDSVWYEILSFSKPAHFLTVAGFPVLRFQQKLFAKHSTDAMIREV-NNDMPLKG 230 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9276.17330.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9276.17330.1 >prot_E_fasciculatus_S2_contig9276.17330.1 ID=prot_E_fasciculatus_S2_contig9276.17330.1|Name=mRNA_E_fasciculatus_S2_contig9276.17330.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=130bp MEVAEQDSRRWKEGMGLLTVVKCYGVLWSANPCRLVYAHWDRELPRLLGKback to top mRNA from alignment at E_fasciculatus_S2_contig9276:1295..5684- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9276.17330.1 ID=mRNA_E_fasciculatus_S2_contig9276.17330.1|Name=mRNA_E_fasciculatus_S2_contig9276.17330.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9276:1295..5684- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9276:1295..5684- >mRNA_E_fasciculatus_S2_contig9276.17330.1 ID=mRNA_E_fasciculatus_S2_contig9276.17330.1|Name=mRNA_E_fasciculatus_S2_contig9276.17330.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=390bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9276:1295..5684- (Ectocarpus fasciculatus EfasUO2)back to top |