mRNA_E_fasciculatus_S2_contig9270.17326.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9270.17326.1
Unique NamemRNA_E_fasciculatus_S2_contig9270.17326.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9270.17326.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSL0_9PHAE)

HSP 1 Score: 337 bits (864), Expect = 1.960e-108
Identity = 212/304 (69.74%), Postives = 224/304 (73.68%), Query Frame = 1 
Query:  304 VARRHGHGTGGGRVAGGVVGVLEGVTAEAAAAIAKREAEEAAARSANGGYSEGESVVYMRNGEAHPAVVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPKKTPPGVGEPSPDG-----------------------SSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVGAGDPWAAARARLVDLTADVGDPAAAAPGAAAEPRDSAPPSMAQKLASAFAAMPAAEVRAILERYAAGGGRAGGGGWEPPSDGSGLSGSGXXXXXXXVSNGEGVAIAVADACREMVLACLARVPPPRRES 1146
            VARRHGHGTGGGRVAGGVVGVLEGVTAEA AAIAKR+AEEAAARSANGGY+EGESVVYMRNGEAHPA+VMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLP +TPPGVG  SPDG                       +                       XXXXXXXXVGA DPW AARARLV+L AD+GDPAAA  GAAAEPRDSA PSMAQKL +AFA MPAAEVR ILER  AG G+AGGGGWEP S   GLS  G       VSNGEGVA+AVADACR++VL CLA V  P RES
Sbjct:  145 VARRHGHGTGGGRVAGGVVGVLEGVTAEAEAAIAKRKAEEAAARSANGGYNEGESVVYMRNGEAHPAIVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPMETPPGVGGSSPDGXXXXXXXXXXCRPDGDGPREGGTTDRSTSGMRVTSRISLKEEVGGGGXXXXXXXXVGAVDPWEAARARLVNLAADLGDPAAA--GAAAEPRDSALPSMAQKLGTAFAEMPAAEVRVILERSVAGCGKAGGGGWEPASGSDGLSERGVGGGDAGVSNGEGVAMAVADACRDIVLTCLAGVGGPGRES 446
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BLAST of mRNA_E_fasciculatus_S2_contig9270.17326.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNV3_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 1.070e-88
Identity = 178/194 (91.75%), Postives = 181/194 (93.30%), Query Frame = 1 
Query:   82 LTLLCPLHYCAARGMLDNLVAEVAKGRSVNTVGSGGDTPLXXXXXXXXXXXXXXXXXXXADPLRRNAXXXXXLDVARRHGHGTGGGRVAGGVVGVLEGVTAEAAAAIAKREAEEAAARSANGGYSEGESVVYMRNGEAHPAVVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPKKTPPGVGEPSPDGSS 663
            LTLLCPLHYCAARGMLDNLVAEVAKGRSVNTVGSGGDT  XXXXXXXXXXXXXXXXXXX        XXXXX  VARR+GHGTGGGRVAGGVVGVLEGVTAEA AAIAKREAEEAAARSANGGYSEGESVVYMRNGEAHPA+VMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPK+TPPGVGEPSPDGSS
Sbjct:  148 LTLLCPLHYCAARGMLDNLVAEVAKGRSVNTVGSGGDTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVARRYGHGTGGGRVAGGVVGVLEGVTAEAEAAIAKREAEEAAARSANGGYSEGESVVYMRNGEAHPAIVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPKETPPGVGEPSPDGSS 341
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9270.17326.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized1.960e-10869.74protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.070e-8891.75protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9270contigE_fasciculatus_S2_contig9270:1585..5882 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score288.5
Seed ortholog evalue4.4e-75
Seed eggNOG ortholog2880.D8LNV3
Model size1371
KEGG koko:K16726
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.response to abiotic stimulus
EggNOG OGsCOG0666@1,KOG4177@2759
Ec32 ortholog descriptionAnkyrin repeat-containing domain
Ec32 orthologEc-08_005710.1
Cds size1113
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9270.17326.1prot_E_fasciculatus_S2_contig9270.17326.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9270 1621..5660 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842576.767445-UTR-E_fasciculatus_S2_contig9270:1584..16201696842576.767445-UTR-E_fasciculatus_S2_contig9270:1584..1620Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9270 1585..1620 +
1696842576.8395174-UTR-E_fasciculatus_S2_contig9270:5660..58821696842576.8395174-UTR-E_fasciculatus_S2_contig9270:5660..5882Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9270 5661..5882 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842576.7847896-CDS-E_fasciculatus_S2_contig9270:1620..17401696842576.7847896-CDS-E_fasciculatus_S2_contig9270:1620..1740Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9270 1621..1740 +
1696842576.7960405-CDS-E_fasciculatus_S2_contig9270:2371..26721696842576.7960405-CDS-E_fasciculatus_S2_contig9270:2371..2672Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9270 2372..2672 +
1696842576.8072772-CDS-E_fasciculatus_S2_contig9270:3228..32871696842576.8072772-CDS-E_fasciculatus_S2_contig9270:3228..3287Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9270 3229..3287 +
1696842576.8181798-CDS-E_fasciculatus_S2_contig9270:4135..43341696842576.8181798-CDS-E_fasciculatus_S2_contig9270:4135..4334Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9270 4136..4334 +
1696842576.82893-CDS-E_fasciculatus_S2_contig9270:5226..56601696842576.82893-CDS-E_fasciculatus_S2_contig9270:5226..5660Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9270 5227..5660 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9270.17326.1

>prot_E_fasciculatus_S2_contig9270.17326.1 ID=prot_E_fasciculatus_S2_contig9270.17326.1|Name=mRNA_E_fasciculatus_S2_contig9270.17326.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=371bp
MKGSTAVMLAKTETALTLLCPLHYCAARGMLDNLVAEVAKGRSVNTVGSG
GDTPLHAAATTGNIDSTRLLLDRGADPLRRNAHGETPLDVARRHGHGTGG
GRVAGGVVGVLEGVTAEAAAAIAKREAEEAAARSANGGYSEGESVVYMRN
GEAHPAVVMKVHQDDEEPYYTVRVHETGRERQTDANHLVRSLPKKTPPGV
GEPSPDGSSSSPPSCCPDGDGGAPREGGGGGGGGGGGGGVGAGDPWAAAR
ARLVDLTADVGDPAAAAPGAAAEPRDSAPPSMAQKLASAFAAMPAAEVRA
ILERYAAGGGRAGGGGWEPPSDGSGLSGSGVGVGDAGVSNGEGVAIAVAD
ACREMVLACLARVPPPRRES*
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mRNA from alignment at E_fasciculatus_S2_contig9270:1585..5882+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9270.17326.1 ID=mRNA_E_fasciculatus_S2_contig9270.17326.1|Name=mRNA_E_fasciculatus_S2_contig9270.17326.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4298bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9270:1585..5882+ (Ectocarpus fasciculatus EfasUO2)
TTGGTGGTTTCAGGCGCGAGTCCCACGCTGGAGAACATGAAGGGGAGCAC
GGCTGTGATGCTCGCCAAGACCGAGACGGCGTTGACGCTGCTGTGCCCCC
TGCACTACTGCGCTGCGAGGGGCATGCTAGACAACCTTGTGGCGGAGGTC
GCCAAGGTGCGGGTTCCGCCGGTCACGAGGGCATGTGTGTGTGTGTGTGT
CTTTGTTGTTAGCGTCGACCGCGCTAACCAATTAAAATAAGGAGAATAAG
TCAGTCTCAGCGCGGTTGAAAGCAGAAAATTCTTCTATAGGCCATGGTTT
GAGAACCCGTGAGGGGGCGTCGCGGGGAAGACTAAGCTACTCTCCGGATT
AACGACAGAAACGGTATCGTGTGTGTGTATGTGGCGGCAGAGCGGAGAGG
TAGGAACCTCGGCTTCGCACCCATGCCCGACACTCGCTTTTTGATTATCT
GTTCTCGCCCCCGATAGACGTCGATTCTCTCACCGCATCGCGCATATTCG
GAACACAAACAGGCGTAAACCGACTCCGACACCCATACAAGGTTAAATAT
GGCAACCCATCCCCCCCCCCAATTCCATCCTGCGGCATCCCCAAACGAAG
CATAGGCCGTAACACACGACTCACTTTGCGTATTCCACAGACCCCCAAAA
TGCCACCAAATGGCACGGGAGATCCGTGAACACAGTCGGAGGCGACCCCC
CCCCCCTCCATCCAGCGGCGGGCCCTGAATGAATTGCAGACCTGACCTCA
ACACGCGAATCCCTGCCCTGTTCCACACACGTGGCAGGGGAGGTCAGTCA
ACACCGTCGGTAGCGGGGGTGACACCCCCCTCCACGCCGCCGCCACCACC
GGTAACATCGACTCGACCCGCCTGCTGCTGGATCGAGGAGCGGACCCGCT
GCGAAGAAACGCCCACGGGGAAACCCCGCTGGACGTCGCTCGACGGCACG
GGCACGGCACCGGCGGCGGACGGGTCGCGGGGGGCGTCGTCGGGGTGTTG
GAAGGCGTTACGGCGGAGGCAGCGGCGGCGATAGCCAAGAGGGAGGCGGA
AGAAGCCGCCGCCAGGTCGGCGAACGGGGGTTATAGCGGTGAGATAGGTT
GTGTTTTTAAGGGGTGGGGAAGCACTGCCGCCGCGGTCCTTTCGTCGACC
TACCGGATGGTGTTCGTTGTGTCTTGAAAGGACGGGGGGGGGGGCGGGGG
CATAGGGAGATATACCGTAATTTCCATGCCCTTTGTTCGGGAACAGGCCG
GGGTAGGGCCGCTGTTGCCATGCTCCAGCGTCTCTCTGCTCGTGTAGGTT
GGCGGTGCTTTTCGGTTTTGTCCAAGAGCCCCAACTAAAAAGATGGTGGT
GCACACGAAGGGTACATGATTTTGCGAAACTCTGTGAATGTTTCAACACT
TTTGGGTTTTGCGAGGGAGAGCAAGATGAACTGGTTTGGAAATTCAATCT
GTCAGTCCGTCGTATACACCATACGGCAAGAGTATTAGCTTTTGTGCCCA
GCGAAGCCGATGTTTATGACGCGAAACGCTCATATTTGGTCACAGCAGTG
CCGGCTACTATTAATATGTAAGTCGTTTGTGTCACTTGTTTGATCGCCCG
CGTGAATTTCTTGTCAAAACTGCTGCGGTTGTCTTCCGGGGCAGAGGGGG
AATCCGTCGTGTACATGCGCAACGGAGAGGCGCACCCGGCAGTTGTCATG
AAGGTGGGGATGGGGAAAGCAATCCCGAAGATTTTGTAAGAGGAGTGTTG
GTGCTTTGTGCCACACCCGAGAGAGCAAGCAGGCGACGACTAGGAGGGCT
CTGTGTCGCTAAAAACAAGCCTATGCGAGGGTCTCACTGTACGTTTCTAC
GCCCGATAGCCCCTGGCATGTATGTAGCAGGAGGAGTGCCGCGTGATGTC
ATGTCCCAGGTGCAGAGAGGGAGTGCCCTACCGTCCTTACCAATGACAAA
AGCCCTACCGTCCTTACCTATGACAAAAGACCCCAACGTACGAAGACGCC
TCCAAGGGTTTGGAACCCCTGGAGCAGAACCCCTGGAGCAGGAGGAGTGC
CGCGTGATGTCATGTCCCGGGTGCAGAGAGGGAGTGCCCTACCGTCCTTA
CCTGAGGCGAAAGACCCCAACGTATACAGACGCCTCCAAGGGTTTCGCCC
AGCAGGACACCGCACACAAGAGCGGTACTGTAGGGCAGTAGTTCTGACGG
GCGGAAAATCGCAGCAGCATATCTTTTTGGGTGGTGCGAGAAAACACCTA
AATGCGGATCCACAAAGCCCGCTTGTTGTGTCCCGGCATTGTAGGGATGA
GGGGTCAATGCTCTACCGACTGCGGCATGCGTTTACATGAGTAACCCCCC
CCCCCCCCCCCCCCCCCCCAGGCCCCCCCGCCCCCAGAAAGCCCAACCCT
CCCTCTGTGGGTCTGGGTGGGGGGAAGGGGGGGGAGGGGGGGGCTTCCNN
NNNNNNNNTTTGTCCCGGGTTTGGGGGGGTGGGGGGTAAATTCTCTTCCC
ACTGCGGCCTGCGTTTAAATAAGCACCCCCCCCCCCCCCCCCCTGACGCA
GGTCCACCAGGACGACGAAGAGCCATACTACACCGTGCGGGTTCACGAGA
CGGGAAGGGAGAGGCAGACGGATGCTAACCACCTCGTGCGGAGCCTGCCG
AAGAAGACGCCTCCGGGGGTAGGAGAACCCTCTCCCGATGGGTCATCGTC
ATCACCGCCGTCGTGTTGTCCGGACGGCGACGGAGGAGCACCACGAGAAG
GTCAGCTGCGCGACAGTATAAATAGCAGCGTTCGTCAGGGTGGCTGTACC
GTGTTGAAGGCGTTTTCGGCGCCATTAGCGTGTTGTTTTCGCGATGGATC
GTTCGCTTCGCTTCGCTTGTTGTGTCGCAGTGTGGACATGTGCACCTGCG
GTTTGTTTCACCGCTTGTTGTGGCAGGCGTATCGCGTGATCGTCGTGCAG
GGCAAGCGCCTTTTGCCTGCGCCCCCTTGTCCCCCGCCACGCCGGCTTGT
GGTCACAGTGTGAAAAACATTTGGCACTGCTTTTGCTGCTGCTGTTGCTG
CTGCCTCTGTGTTGTTGTTGCTCCTGTAGCTGCTGCCGCTGCTTCTGTCA
TCGTTGTTTGGTCGTCGTTGTTGCTACTGGTATAGTGCTTGGTGGCTGGC
GCCCATCTAATTCCCAAGAGGGTGACTTTTGATAGCTGTGCCTTGACACG
GAAGGCTCGTGAGCGTGTCACATGTCACAACACTCACCGAGAACGAGCGC
ACCCTCGGTTCCTTGCGAGTTCACGTGATAAAAAGGGGGAGATTTTTTCT
CAAAACTGACTACCTTTTGGTTGTGGTTGCTGTTGAAGCATATGGTGCCT
TGTGCAACAGATTTGAGAACAAGCGAGAGAACAAGCGATCTGTTGTTGAA
TGGCAAGAGGGCTGCGCAGCATCGCTTGACGAAAACGACAGCATGTGAAA
AAAATAGCCTCTCTAGCAAGGTAGGACCTAACCCTCTGCGGCTTCCCCAC
TTGCGTCCCCCCCGCGGGCCTCCAGGAGAATCTGCAGAATCTACCGATAG
GGGTACGACGGACAGGAGTATTAGCGGCATGGGAGTGACCAGCAGGACAA
GCCCTAGAGAGCAGGTGGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGGGTGGGTGCTGGTGACCCCTG
GGCAGCCGCACGCGCGCGACTTGTCGACCTGACCGCGGATGTCGGCGACC
CCGCCGCCGCCGCCCCAGGGGCGGCGGCAGAGCCGCGAGATAGCGCTCCG
CCCTCGATGGCACAGAAGTTAGCGTCCGCGTTTGCCGCGATGCCCGCGGC
GGAAGTTCGCGCCATCCTCGAACGATACGCTGCGGGTGGCGGGAGGGCGG
GGGGCGGTGGCTGGGAACCGCCTTCAGATGGTAGTGGGTTGTCGGGTAGC
GGGGTGGGGGTGGGTGACGCGGGCGTGAGTAACGGGGAGGGGGTCGCGAT
CGCCGTCGCCGACGCCTGCCGAGAAATGGTGCTTGCGTGCTTGGCACGGG
TGCCCCCCCCGCGGCGAGAGAGTTGAAGGGGTCGGTGGGGTCGGGGCAAT
GTTTGTGGTGCCCGAACGAATTTCGGAACGTGTTTTTCATGGTCGTCCCC
TCGTGTGTACATGGTGTTGTGTGTGCTTGGTTTCGCAGTTGTGGAGGCGG
GATGTTGGACGCTTTGTCTTGGTTGCCGGTTAGATGTCACCGGATGACGT
CCCCGTAGAGTTTTGTCTTGTCGTTGCAGTGCTGCCGCTGTTTGTTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9270:1585..5882+

>mRNA_E_fasciculatus_S2_contig9270.17326.1 ID=mRNA_E_fasciculatus_S2_contig9270.17326.1|Name=mRNA_E_fasciculatus_S2_contig9270.17326.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1113bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9270:1585..5882+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGGGGAGCACGGCTGTGATGCTCGCCAAGACCGAGACGGCGTTGAC
GCTGCTGTGCCCCCTGCACTACTGCGCTGCGAGGGGCATGCTAGACAACC
TTGTGGCGGAGGTCGCCAAGGGGAGGTCAGTCAACACCGTCGGTAGCGGG
GGTGACACCCCCCTCCACGCCGCCGCCACCACCGGTAACATCGACTCGAC
CCGCCTGCTGCTGGATCGAGGAGCGGACCCGCTGCGAAGAAACGCCCACG
GGGAAACCCCGCTGGACGTCGCTCGACGGCACGGGCACGGCACCGGCGGC
GGACGGGTCGCGGGGGGCGTCGTCGGGGTGTTGGAAGGCGTTACGGCGGA
GGCAGCGGCGGCGATAGCCAAGAGGGAGGCGGAAGAAGCCGCCGCCAGGT
CGGCGAACGGGGGTTATAGCGAGGGGGAATCCGTCGTGTACATGCGCAAC
GGAGAGGCGCACCCGGCAGTTGTCATGAAGGTCCACCAGGACGACGAAGA
GCCATACTACACCGTGCGGGTTCACGAGACGGGAAGGGAGAGGCAGACGG
ATGCTAACCACCTCGTGCGGAGCCTGCCGAAGAAGACGCCTCCGGGGGTA
GGAGAACCCTCTCCCGATGGGTCATCGTCATCACCGCCGTCGTGTTGTCC
GGACGGCGACGGAGGAGCACCACGAGAAGGAGGAGGAGGAGGAGGAGGAG
GAGGAGGAGGAGGAGGGGTGGGTGCTGGTGACCCCTGGGCAGCCGCACGC
GCGCGACTTGTCGACCTGACCGCGGATGTCGGCGACCCCGCCGCCGCCGC
CCCAGGGGCGGCGGCAGAGCCGCGAGATAGCGCTCCGCCCTCGATGGCAC
AGAAGTTAGCGTCCGCGTTTGCCGCGATGCCCGCGGCGGAAGTTCGCGCC
ATCCTCGAACGATACGCTGCGGGTGGCGGGAGGGCGGGGGGCGGTGGCTG
GGAACCGCCTTCAGATGGTAGTGGGTTGTCGGGTAGCGGGGTGGGGGTGG
GTGACGCGGGCGTGAGTAACGGGGAGGGGGTCGCGATCGCCGTCGCCGAC
GCCTGCCGAGAAATGGTGCTTGCGTGCTTGGCACGGGTGCCCCCCCCGCG
GCGAGAGAGTTGA
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