mRNA_E_fasciculatus_S2_contig9261.17318.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9261.17318.1
Unique NamemRNA_E_fasciculatus_S2_contig9261.17318.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9261.17318.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9261contigE_fasciculatus_S2_contig9261:1961..2957 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size872
Hectar predicted targeting categoryother localisation
Exons2
Cds size471
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842576.1427739-UTR-E_fasciculatus_S2_contig9261:1960..20701696842576.1427739-UTR-E_fasciculatus_S2_contig9261:1960..2070Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9261 1961..2070 +
1696842576.19435-UTR-E_fasciculatus_S2_contig9261:2666..29571696842576.19435-UTR-E_fasciculatus_S2_contig9261:2666..2957Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9261 2667..2957 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842576.1616256-CDS-E_fasciculatus_S2_contig9261:2070..23841696842576.1616256-CDS-E_fasciculatus_S2_contig9261:2070..2384Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9261 2071..2384 +
1696842576.1739004-CDS-E_fasciculatus_S2_contig9261:2509..26661696842576.1739004-CDS-E_fasciculatus_S2_contig9261:2509..2666Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9261 2510..2666 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9261.17318.1prot_E_fasciculatus_S2_contig9261.17318.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9261 2071..2666 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9261.17318.1

>prot_E_fasciculatus_S2_contig9261.17318.1 ID=prot_E_fasciculatus_S2_contig9261.17318.1|Name=mRNA_E_fasciculatus_S2_contig9261.17318.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=157bp
MPGCRPPPGCRHVCTQTLDGCASIFIPSDFANRQQTVLKNSSVCLQSHTT
SIRRLDLLVSSHRVGKRHVWYVAWLRNLIKAWVPTTVRNRQKSNATHRKP
STRDTYVNSFAPLQTTRRRILKGDGTHLHVRPQHGYMKSKLIGQHDILSQ
RSEHGR*
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mRNA from alignment at E_fasciculatus_S2_contig9261:1961..2957+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9261.17318.1 ID=mRNA_E_fasciculatus_S2_contig9261.17318.1|Name=mRNA_E_fasciculatus_S2_contig9261.17318.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=997bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9261:1961..2957+ (Ectocarpus fasciculatus EfasUO2)
ATGCATACGATACGGCGCAACTTTGCTCATTTCCATCACCTTGGAGGCGT
ACACGGGCGGTATTGGAGGTTTGGAATGAATTCGAAACGCGAACTCTCTG
CGATTCAGATATGCCTGGTTGTCGCCCGCCCCCTGGTTGTCGCCATGTTT
GCACCCAAACCTTGGATGGATGTGCATCCATATTCATTCCCAGCGACTTT
GCCAACAGGCAGCAAACCGTATTGAAAAACTCTTCCGTCTGCTTGCAATC
CCACACAACAAGCATAAGGCGTTTGGATCTTCTTGTCAGCTCACATCGCG
TAGGCAAGAGGCACGTGTGGTATGTAGCATGGCTGCGAAACCTCATCAAG
GCCTGGGTGCCCACGACTGTGCGAAATCGACAGAAAAGCAATGCCACCCA
CAGAAAACCGTCCACTAGAGACACGCCTCATCAGGTTACCTTATTTCTGG
CATGATTTGCAAGGAGCGGGCTAAGAATCGCCAGGGGCACGGTCCTACAC
GAGAAAAATAGTGTACGAATGTATGAGGTAAATGACCAAGTTTCTCGAGA
TACGTGAATTCCTTCGCTCCACTACAGACGACCCGGCGGCGTATTCTAAA
AGGCGACGGCACCCATCTTCATGTGCGGCCACAGCATGGTTACATGAAAA
GCAAACTGATTGGCCAGCACGACATCCTATCGCAACGGTCGGAGCATGGG
AGGTGACGCAGGCCCATTCAGGTGCAGCGTTCACCCTGTTGCGGATCTTA
CACCCGCTCTTGCCACGATCTCTCTCCATCCGGATTTCTGGCCGCCCTAT
CTGGCGTCGTCACCCATAGGTTTCCGTCGTATGAAAATTCAGTGAACCAA
ATTCTTGACCTAGACTAGCGATCGATGTGGTACGTGACAGCCCGAAAGAG
AAAATGGAAGAAATAACTGATGTGTGTGTAGGACTAAACACCAGTCTACG
TGTACATCAGTTTGTTCGAAAGCTCTCCCGGTCACCGTTCGTCAAAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9261:1961..2957+

>mRNA_E_fasciculatus_S2_contig9261.17318.1 ID=mRNA_E_fasciculatus_S2_contig9261.17318.1|Name=mRNA_E_fasciculatus_S2_contig9261.17318.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=471bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9261:1961..2957+ (Ectocarpus fasciculatus EfasUO2)
ATGCCTGGTTGTCGCCCGCCCCCTGGTTGTCGCCATGTTTGCACCCAAAC
CTTGGATGGATGTGCATCCATATTCATTCCCAGCGACTTTGCCAACAGGC
AGCAAACCGTATTGAAAAACTCTTCCGTCTGCTTGCAATCCCACACAACA
AGCATAAGGCGTTTGGATCTTCTTGTCAGCTCACATCGCGTAGGCAAGAG
GCACGTGTGGTATGTAGCATGGCTGCGAAACCTCATCAAGGCCTGGGTGC
CCACGACTGTGCGAAATCGACAGAAAAGCAATGCCACCCACAGAAAACCG
TCCACTAGAGACACATACGTGAATTCCTTCGCTCCACTACAGACGACCCG
GCGGCGTATTCTAAAAGGCGACGGCACCCATCTTCATGTGCGGCCACAGC
ATGGTTACATGAAAAGCAAACTGATTGGCCAGCACGACATCCTATCGCAA
CGGTCGGAGCATGGGAGGTGA
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