mRNA_E_fasciculatus_S2_contig9240.17301.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9240.17301.1
Unique NamemRNA_E_fasciculatus_S2_contig9240.17301.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9240.17301.1 vs.
Match: Coiled-coil (domain 6-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKD2_ECTSI)

HSP 1 Score: 137 bits (344), Expect = 8.940e-36
Identity = 83/98 (84.69%), Postives = 83/98 (84.69%), Query Frame = 1 
Query:    1 MQENAPASGGSTTTAGAVAPVAPALPPVTVSTPTRPASFPSCTTSPGSPELEVSVLRRELLMEKHKNSHLEGELVKLRKSAVEISQQVEAEEECLINR 294
            MQENAPASGG         P    LPPV  STPTRPASFPSCTTSPGSPELEVSVLRRELLMEKHKNSHLEGELVKLRKSAVEISQQVEAEEECLINR
Sbjct:    1 MQENAPASGGXXXXXXXXPP----LPPV--STPTRPASFPSCTTSPGSPELEVSVLRRELLMEKHKNSHLEGELVKLRKSAVEISQQVEAEEECLINR 92
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9240.17301.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Coiled-coil8.940e-3684.69domain 6-like protein n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9240contigE_fasciculatus_S2_contig9240:1129..5966 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score140.6
Seed ortholog evalue9.1e-31
Seed eggNOG ortholog2880.D7FKD2
Preferred nameCCDC6
Model size675
KEGG koko:K09288
KEGG Pathwayko05200,ko05216,map05200,map05216
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000793,GO:0000922,GO:0003674,GO:0005198,GO:0005200,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005819,GO:0005829,GO:0005856,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007163,GO:0008150,GO:0009987,GO:0015630,GO:0016043,GO:0022402,GO:0022414,GO:0030010,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044422,GO:0044424,GO:0044430,GO:0044444,GO:0044446,GO:0044464,GO:0051179,GO:0051234,GO:0051293,GO:0051294,GO:0051295,GO:0051296,GO:0051321,GO:0051640,GO:0051641,GO:0051649,GO:0051653,GO:0051656,GO:0071840,GO:1903046
Exons7
EggNOG free text desc.SH3 domain binding
EggNOG OGsKOG2129@1,KOG2129@2759
Ec32 ortholog descriptionProtein of unknown function DUF2046
Ec32 orthologEc-05_005760.1
Cds size675
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9240.17301.1prot_E_fasciculatus_S2_contig9240.17301.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9240 1129..5966 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842574.4630256-CDS-E_fasciculatus_S2_contig9240:1128..12841696842574.4630256-CDS-E_fasciculatus_S2_contig9240:1128..1284Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9240 1129..1284 +
1696842574.4849472-CDS-E_fasciculatus_S2_contig9240:1840..19361696842574.4849472-CDS-E_fasciculatus_S2_contig9240:1840..1936Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9240 1841..1936 +
1696842574.4973526-CDS-E_fasciculatus_S2_contig9240:2825..28821696842574.4973526-CDS-E_fasciculatus_S2_contig9240:2825..2882Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9240 2826..2882 +
1696842574.5086205-CDS-E_fasciculatus_S2_contig9240:3840..39481696842574.5086205-CDS-E_fasciculatus_S2_contig9240:3840..3948Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9240 3841..3948 +
1696842574.519533-CDS-E_fasciculatus_S2_contig9240:4519..46061696842574.519533-CDS-E_fasciculatus_S2_contig9240:4519..4606Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9240 4520..4606 +
1696842574.5307455-CDS-E_fasciculatus_S2_contig9240:5015..51071696842574.5307455-CDS-E_fasciculatus_S2_contig9240:5015..5107Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9240 5016..5107 +
1696842574.540375-CDS-E_fasciculatus_S2_contig9240:5887..59661696842574.540375-CDS-E_fasciculatus_S2_contig9240:5887..5966Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9240 5888..5966 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9240.17301.1

>prot_E_fasciculatus_S2_contig9240.17301.1 ID=prot_E_fasciculatus_S2_contig9240.17301.1|Name=mRNA_E_fasciculatus_S2_contig9240.17301.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=225bp
MQENAPASGGSTTTAGAVAPVAPALPPVTVSTPTRPASFPSCTTSPGSPE
LEVSVLRRELLMEKHKNSHLEGELVKLRKSAVEISQQVEAEEECLINRVS
SRKMMKRLMELKKEKEDLALEVEREEELLTNTLQKKLNQLRQEKVDLENQ
LEREQEYVVNKLRKQLAQVTADKERMAMEVEREEEFLTNKLVKKLDQLKE
EKAAVEEQLAQEKGEVKAVTAEKG*
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mRNA from alignment at E_fasciculatus_S2_contig9240:1129..5966+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9240.17301.1 ID=mRNA_E_fasciculatus_S2_contig9240.17301.1|Name=mRNA_E_fasciculatus_S2_contig9240.17301.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4838bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9240:1129..5966+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGGAAAACGCGCCTGCCTCCGGTGGTAGCACCACCACTGCGGGAGC
GGTAGCACCCGTAGCACCCGCTCTTCCGCCCGTCACCGTGTCCACCCCGA
CCCGTCCGGCTTCCTTCCCGTCTTGCACGACTTCACCCGGCTCTCCGGAG
CTGGAGGTGAGTGAGCCCTGTTGAGTAGGGCGGCCCTTGTTGCTGCTGCG
ACGATGTCCCTGCCTGCTGCAGGCAGGTTGAGACCACGAGTTGGGTGAAG
AAAGACTTCCCGCAGAATATTATACTAACACGAGTCTACTGCTGTAGAGA
GAGCGGCGTACGGCGGGGGGGGTGTACAATGGGGTGGGTTGACGCTTTCG
AAGTCTTGTCGAAACAGCTCGCTTGGGCGCGAGCATACAGCTAGTCCACG
AGCACCAAGTGAGCCCCGTCCGACTTAGAAGTATGCGTACACCTGGTGGC
CCGTTGAACACGCTCACAGGCACAGGCGTGTATTGTATGTATGTATGCCG
TCGCGCAGCAGGCTGGTCCATTGTTCTTTGCAGGCATGTTTGCAGTCGTA
TCTACCGCTTAATGTGAAGAAAACAACAACAACAACAACAACCGCTTCTT
TCTTATTTCTCGTGGGAGACTTGTGTCCACGTGTAGTGTGTTGCCTTCAC
GAGGAGACAAACAAACGCCCATGGATGCATGTGCTACTACTACTTCCTTC
TTTTTTTTGTAGGTCTCGGTGCTGCGCCGGGAGCTCCTGATGGAAAAGCA
CAAGAACTCACACCTGGAGGGAGAGCTGGTCAAGCTTAGGAAGTCTGCCG
TCGAGATCGTGAGTGCTCTCAGCGCTTCCTTCCCTTAGACCCCTGGTTTG
TTCTTCGCGTGGTCTGGTCCTTGGGCACCACGGCATGAGTCGACGCCCCA
CGGATCAGAGGCAGTAGCGTTCGCGAGGATATTTATCTTGATTTTAGTAG
GGGGTTGGGGGATAGGGTTAGTGATGGGGATACGAAACCTCTCTCTCAAT
TTCATGGATTCAATTTCATGGATTCACACTGAGGTGTATCCTCGCGAAAG
CGATCCGAGCGTGCGACGGCTCCTGTGCTGCGGGGGGGGGGGGGGGTTGT
CAAGCATATGAATGTGGTGTTCAGACGGGGCCATGGGGTGGCCTTCCTGC
CCTACGAACCAAATGGACACCTGTCCGAGGATTTTGAGCAAGTGTACGTA
CTTGGCGGATCAGAGCGATGGCTACGGGGGTCGGGGGGGCGTTATCAGGC
GTACATGTATGAATGTGAATGGAGCATGGGATGGCCTTTTCTGCCCTCTC
TGACAGCTTACCTACCGACAGAGGAGATTTGGAGCAGGAAGCGTACGTGC
TTCGCGCCGACGGCGCATTCCGTGGTTGCGTGTGGTTGTTTCGCCCGTTA
CGGCCGTATAGTGTATTAGTATAGTATAGTATAGTGGGTATACCCCGAGT
GTGACACAGCATCGCCAAACTATCGAGGCCCTTCGTCCAATTTCTGCTGC
GTTGCCAAGGCCAGTTGCACCCCTTTCGCCCCTCCGCCCTCCCACACTCT
TTCGTGTTCCTTCGGTATCCCCATTCTATCCCGCCGCCGCCGCATCGCTC
TCGCCCCTGTCCTGATTCTACGCGTTTCCACCTCCTCTCCGGACACACCG
CGTGTGCTGTTTTACGGTTTTCGTCGGGTGCTTGTGCGGTCAAACAGAGC
CAACAAGTGGAGGCGGAGGAGGAATGCCTCATCAACCGGGTGAGTAGTCG
AAAGGTGCCGGATCTCACGTGGCCCAACCCCCCGCATGGCTCTGCCTTTT
CTTGCAGGAGGGGCTGACGGTGTGTGGGTGACTTGGCGGGTTGGGGGGGG
GGGGCGTACTCTTATGTGTTGCATGCCTTAGTCGTTGGGCCATTGACGAC
GCGTCCTCGAGAGAACGGCGCGTTGTTCCCAAAGGACCGATCACCGATTG
CCAATCGTTCCTTCCTACTTTGCCAAAGGTGACTCACTTGGCGGGGGGGG
GCAGTAAAAACTACCTCATAATTCGTTGGGAGAGTAAAGCCCAAAACTAT
GTACCGGGAAGCTCTGTGCTTTTCATCACCAAGTTGAACACAACAGCAGT
GGCACCGGGGACGGGCGGACAAGGCGGTTTCATCATCAGAGGGAACATTT
CCGTTCACCGGTACTTTTGTCGAGAGGCACGAATCGGGAGGGATTCTCCA
GCACAACCAACCGGCCGTGAAACATGAGACACGGGGCGAGAGCGGTTGAA
AGAAGGGGATAGTGACGATATGGAGGGAGGGGGATATGGACGAGACCATG
GCATCGCAAACGTCTCTGATGGCTTGTTCCAGCATGCAAGGACTGCTTTG
TTCTTGTTGGTCGAAAACGTTGAGCCGGGGGTCAAGCTCAAACAACAAGA
TGCTACGTGCGACATTCTCAAACAACAAGATGCCTAAATGCGCGTGTGGA
TGTAATATAAAAAAACTGTCCTCAAACCCAACCCGAACACGTAAGGGGGA
CTTCGGCAGGGTACCTTGGTCTAGTCATGCGGGACAGATCTACCTTTGAG
GTCAACACCGGTAGCTGTTTTGTGTTTTTGCCGTTGCTCAAGGGTTGCTG
CCAAAAGGCATGCAGGCAAGTTAGCTGTAGCTCGAAGCGAGTTATGGCTC
TTTGGCGAAGCCCGTACTTGCGGTTGGTAACCTTGTTTTCGTACTTAAAA
AAAAAAAAAAAGATGATGAAGCGGCTGATGGAGCTCAAGAAGGAGAAGGA
GGACCTGGCGCTTGAGGTCGAGAGGGAAGAGGAGCTTCTGACGAACACAC
TTCAGAAGAAACTCAACCAGGTGCGTCCGGGATGTGCACTTTCTTATAGG
AGCAGGCCCACAGGAACCGGAGTGGCGGGTGGCGGTATCTGAGGGGGCCC
TGCAGACTGAACGACGAGAAGGGGTGCGCGCAACGAGTGGTGTCAATTAG
TTACTCACGTTTTGTTCTTGGTTATTGGGTCTGGGTTCGAAATGTCCCGT
GTTTGCTGTCTAATAAGTGAAGTGAAGTGTAGTCGCGAACACTGTAATGA
TACATCAAGCTCTGTTGGTGGCACTTTTGTTTCTGCTTCCGCTAGTGCGA
CAAGGGCTTTGCTACTCTTGCCAGTTGTGACGCGCTGTTACGACATCCCC
CCCGCCCCTATCGGAGGTGGTAAGTCCTGTTATGTGGACACATATATATA
TTTGTTGAGATGGTGTGGAATCAGAAAACTCAAACATGTATATCGTGAAA
ATACTAAGTAGCCAACTATTAAAACTCAAACATGTATGTCGTGAAAATAC
TATCATGTAGCCAACAATTACCTCGGTGCTTTTGCTTGGTTACTCTCGTT
CTTCCCCTGCTGGTACAATACTGTAACAACGAAAATTGCAGCTGCGTCAG
GAGAAGGTAGACCTCGAGAACCAACTGGAGCGAGAGCAGGAGTACGTGGT
CAACAAGCTCCGCAAGCAGCTGGCCCAGGTACGCGACCCCACGGCATTTT
TTTTGTGTAGCGCAATGCAACTTGAGCCGATTTTGGTTCGAAGTATTTTG
CCCATATTTCATGCTTGTTCCCATCTTGTTGTGGGTTGGTCACCATTTTG
GCAGGGGCGGCTGGTTTGTTGTTGTGTTTACGCCCTTTCGGGGGGGGGAT
TTGGCAGCGGAGCATACACACGTGGCTGTGCGCAAGTGCCTCGCGCTTCT
CCTGTTCGTGCGGCGGGAATCAGGCGGTCGCGGCGCATGCCACTCCGGGG
CGTGGTGGAGAGCTTCGCCGCTCCGATTATCTATGTGGTGTCGCCGTCCG
TGTGGTGTGGCCTGTCGGCTTTCGTTTACGCTCGTGCCCATCTACCATCT
ATTTAACTCCAACGCATGATATGACTCTATCCCTTAGGTGACTGCGGACA
AAGAGCGAATGGCGATGGAGGTGGAGAGGGAGGAGGAGTTCCTGACCAAC
AAGCTCGTGAAGAAGCTTGATCAGCTCAAGTGAGTCAAGTCAGTCAATCC
AGCGTGTTGTCGTCTCTTGAACTTTGGGGTGGGGTTAGGGTTAAAACACA
GAAGGCACAGCAGTTTTGTTTCCTGGAACTCTATTGTGGTTAGTCCTGTG
TACGCCTTGTTGTGGTTTGTTAGTGGCTCCTCGTTTGTGTTTTTGTTTTG
TGTGTGTTTTGTCTTGACTTCAAATCGGTGCTCACAGCATTTGTGTGCGA
CGGACGATGTTTTTGGGCTCGCTCTGGTAGACGCTCCACCAAACAAGGGA
CCTCAGTCCATCCATGTCCTGGTTCCTCCAGACGAAAGGACAAAGCCGCC
GCCCCAAGGCATGCTGGCGCTGGCTTGCGGACGTGCTCTTCTTCAGCGCC
GCTGCATTTTCCGTCTGTTGGGCGTAGTAAATAGTTGCGTGTTGGCCTTG
CGAGTGATGTCGTCTGCGAAGCGCGTCGGACGGCGAAGAAACTGCTTCGG
CGGCGGTTCTCACGTCTCGTTATGAGGGTTGTGAGGATTCGAGCGTTATC
GCGGGTACGGACCCCCACCTGATACTTTCGTCAGCCATGCCATGCCCCAC
ATGCTGTTGCCGAGTAGAATCATGCTCTCGGTTTGTCTTGGTGTCCTTTG
CATGCTCTAGACTCGAACCTCATGCGCACTTCTGTCCAGGAGAACCGTGC
ACGCGGCGTTTGTTGGTGTCGTTTGCATGCCGTAGACTCATTACCTCACG
CGGCACTTTTGACTCATACCTCATATACGTACCACACTTCGCCGCTTGCC
CCAACACAGGGAAGAGAAAGCGGCCGTGGAAGAGCAGCTGGCGCAAGAGA
AGGGAGAGGTGAAGGCGGTCACCGCGGAAAAGGGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9240:1129..5966+

>mRNA_E_fasciculatus_S2_contig9240.17301.1 ID=mRNA_E_fasciculatus_S2_contig9240.17301.1|Name=mRNA_E_fasciculatus_S2_contig9240.17301.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=675bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9240:1129..5966+ (Ectocarpus fasciculatus EfasUO2)
ATGCAGGAAAACGCGCCTGCCTCCGGTGGTAGCACCACCACTGCGGGAGC
GGTAGCACCCGTAGCACCCGCTCTTCCGCCCGTCACCGTGTCCACCCCGA
CCCGTCCGGCTTCCTTCCCGTCTTGCACGACTTCACCCGGCTCTCCGGAG
CTGGAGGTCTCGGTGCTGCGCCGGGAGCTCCTGATGGAAAAGCACAAGAA
CTCACACCTGGAGGGAGAGCTGGTCAAGCTTAGGAAGTCTGCCGTCGAGA
TCAGCCAACAAGTGGAGGCGGAGGAGGAATGCCTCATCAACCGGGTGAGT
AGTCGAAAGATGATGAAGCGGCTGATGGAGCTCAAGAAGGAGAAGGAGGA
CCTGGCGCTTGAGGTCGAGAGGGAAGAGGAGCTTCTGACGAACACACTTC
AGAAGAAACTCAACCAGCTGCGTCAGGAGAAGGTAGACCTCGAGAACCAA
CTGGAGCGAGAGCAGGAGTACGTGGTCAACAAGCTCCGCAAGCAGCTGGC
CCAGGTGACTGCGGACAAAGAGCGAATGGCGATGGAGGTGGAGAGGGAGG
AGGAGTTCCTGACCAACAAGCTCGTGAAGAAGCTTGATCAGCTCAAGGAA
GAGAAAGCGGCCGTGGAAGAGCAGCTGGCGCAAGAGAAGGGAGAGGTGAA
GGCGGTCACCGCGGAAAAGGGGTGA
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