mRNA_E_fasciculatus_S2_contig923.17294.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig923.17294.1
Unique NamemRNA_E_fasciculatus_S2_contig923.17294.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig923.17294.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH2_ECTSI)

HSP 1 Score: 204 bits (518), Expect = 2.330e-65
Identity = 120/142 (84.51%), Postives = 127/142 (89.44%), Query Frame = 1 
Query:    1 VRIINGEIVSDNDPRVAGPQRRAGGGGXXXXXXXXQGRGGYGRVASLLDPPSTTEASGGGARGPA------GASTGPLDKLAEMIGVQGRTVTIPGALGIQEQQVPLIYLMIAALVVLFGGWKVAALIVFAYVITNQRPQGR 408
            VRIINGEIVSD+DPRVAGPQRR   G XXXXXXXXQGR GYG VASLLDPPST EA+GGGARGPA      GASTGPLDKLAEMIGVQGRTVTIPGALG+QEQQVP +YLMIAALVVLFGGWKVAALIVFAYV+ NQ+P+GR
Sbjct:    2 VRIINGEIVSDDDPRVAGPQRR---GXXXXXXXXXQGRAGYGHVASLLDPPSTAEATGGGARGPAAGGRGAGASTGPLDKLAEMIGVQGRTVTIPGALGVQEQQVPFVYLMIAALVVLFGGWKVAALIVFAYVLINQKPRGR 140
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BLAST of mRNA_E_fasciculatus_S2_contig923.17294.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX7_9STRA)

HSP 1 Score: 79.0 bits (193), Expect = 2.360e-16
Identity = 49/131 (37.40%), Postives = 68/131 (51.91%), Query Frame = 1 
Query:    1 VRIINGEIVSDNDPRVAGPQRRAGGGGXXXXXXXXQGRGGYGRVASLLDPPSTTEASGGGARGPAGASTGPLDKLAEMIGVQGRTVTIPGALGIQEQQVPLIYLMIAALVVLFGGWKVAALIVFAYVITNQ 393
            VRIINGEIV DNDPR+    + A              RGG+G       P  +  A  GG      A+  PL +LA+M+GV+G+T+TIP   G+  + V +I+L++ A V L  GWK  A     YV+  +
Sbjct:    1 VRIINGEIVQDNDPRLRQRTQSA----------ATTARGGFGAGDGAARPTPSAAAMAGG------AAESPLQRLADMLGVKGKTITIPAVFGVPSRDVEVIHLLLVAAVSLIFGWKALAFTAVLYVVQTK 115
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BLAST of mRNA_E_fasciculatus_S2_contig923.17294.1 vs.
Match: Hypothetical (protein n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2C2E5_9STRA)

HSP 1 Score: 68.9 bits (167), Expect = 4.570e-12
Identity = 55/155 (35.48%), Postives = 77/155 (49.68%), Query Frame = 1 
Query:    1 VRIINGEIVSDNDPRVAGPQRRA-------------GGGGXXXXXXXXQGRGGYGRVASLLDPPSTTEASGGGARGPAGASTGPLDKLAEMIGVQGRTVTIPGALGIQEQQVPLIYLMIAALV-VLFGGWKVAALIVFAYVI-----TNQRPQGR 408
            V+IINGEIV D+DPR    ++RA             GG G         G GG+G       PPST  AS    + P       + +LA+ + ++GR VTIP   G+ + +V LIYL+I  +V VL   W++ A+ V  Y +     T Q+ QGR
Sbjct:    7 VKIINGEIVQDDDPRAQRLRQRASAAQRPIPTSVNFGGSGGRAHSSSRGGNGGFGGT-----PPSTPVASDPAQQNPLMKI---VQQLAKFLNIEGRLVTIPAVFGVPQSEVELIYLIIIGVVSVLSKSWRIPAVAVVVYFVIKHNETQQQQQGR 153
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BLAST of mRNA_E_fasciculatus_S2_contig923.17294.1 vs.
Match: Hypothetical (protein n=1 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0IP37_9EUKA)

HSP 1 Score: 69.7 bits (169), Expect = 5.580e-12
Identity = 49/141 (34.75%), Postives = 70/141 (49.65%), Query Frame = 1 
Query:    7 IINGEIVSDNDPRVAGPQRRAGGGGXXXXXXXXQGRGGYGRVASLLDPP--------STTEASGGGARGPAGASTGPLDKLAEMIGVQGRTVTIPGALGIQEQQVPLIYLMIAALVVLFGGWKVAALIVFAYVITNQRPQG 405
            II+GEIV DNDPR    + + G                 GR A    P         + T A GG A    G ++ PLD LA MIGVQG+++T+P    +  ++VPLI L++  +V LF GW+V A+    +V++     G
Sbjct:   43 IIDGEIVPDNDPRAIAKRNKVG----------------TGRAAGAPAPTPQRHTAQTAHTTAPGGAADSAMGGAS-PLDALANMIGVQGQSLTVPAVWRLPAREVPLIVLILLGVVTLFFGWQVLAVAALLHVVSGLSDAG 166
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BLAST of mRNA_E_fasciculatus_S2_contig923.17294.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A0A484E731_BRELC)

HSP 1 Score: 64.3 bits (155), Expect = 1.460e-10
Identity = 42/133 (31.58%), Postives = 64/133 (48.12%), Query Frame = 1 
Query:    1 VRIINGEIVSDNDPRVAGPQRRAGGGGXXXXXXXXQGRGGYGRVASLLDPPSTTEASGGGARGPAGASTGPLDKLAEMIGVQGRTVTIPGALGIQEQQVPLIYLMIAALVVLFGGWKVAALIVFAYVITNQRP 399
            VRIINGEIV D+DPRV    +              Q +  + R   +    S+   SG G R P      PL++LA  +G+ G T+ +P  LG   + +  IY+++  L+    GW+    + FAY +  Q+P
Sbjct:    2 VRIINGEIVPDDDPRVRAQLQ------------PQQNQLPHRRFGYVHGSKSSVAPSGSGTRAPPAPGLSPLEELARQVGLDG-TLVVPAVLGFPARPILKIYVVMGVLLTAVFGWRALVFLCFAYFLIKQQP 121
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BLAST of mRNA_E_fasciculatus_S2_contig923.17294.1 vs.
Match: Uncharacterized (protein n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JAQ1_9EUKA)

HSP 1 Score: 63.2 bits (152), Expect = 6.130e-10
Identity = 48/137 (35.04%), Postives = 68/137 (49.64%), Query Frame = 1 
Query:    1 VRIINGEIVSDNDPRVAG---PQRRAGGGGXXXXXXXXQGRGGYGRVASLLDPPSTTEASGGGARGPAGASTGPLDKLAEMIGVQGRTVTIPGALGIQEQQVPLIYLMIAALVVLFGGWKVAALIVFAYVITNQRPQ 402
            V IINGEIV DNDPR      P+  A             G GG G                GGA    GA  GPLD++AE +G++G++V IP    +  ++V LI+++I AL+ LF GW + A+    +V++    Q
Sbjct:    2 VVIINGEIVPDNDPRAIARRNPKPAASTAPGQSNIRNLHGGGGAGMPRM------------GGA---GGAGPGPLDQVAEALGIRGQSVEIPAIWRLPARRVQLIHIVILALLALFFGWHILAVAAVLHVVSGLSEQ 123
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig923.17294.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized2.330e-6584.51protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNH2... [more]
Uncharacterized2.360e-1637.40protein (Fragment) n=1 Tax=Tribonema minus TaxID=3... [more]
Hypothetical4.570e-1235.48protein n=2 Tax=Dictyocha speculum TaxID=35687 Rep... [more]
Hypothetical5.580e-1234.75protein n=1 Tax=Calcidiscus leptoporus TaxID=12754... [more]
Uncharacterized1.460e-1031.58protein n=1 Tax=Bremia lactucae TaxID=4779 RepID=A... [more]
Uncharacterized6.130e-1035.04protein n=1 Tax=Chrysochromulina tobinii TaxID=146... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig923contigE_fasciculatus_S2_contig923:21177..23168 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score68.6
Seed ortholog evalue2.7e-09
Seed eggNOG ortholog4787.PITG_02079T0
Model size411
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2CT53@1,2REV7@2759,3QG1A@4776
Cds size411
Best tax levelPeronosporales
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842573.55843-CDS-E_fasciculatus_S2_contig923:21176..213611696842573.55843-CDS-E_fasciculatus_S2_contig923:21176..21361Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig923 21177..21361 +
1696842573.5713243-CDS-E_fasciculatus_S2_contig923:21880..220251696842573.5713243-CDS-E_fasciculatus_S2_contig923:21880..22025Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig923 21881..22025 +
1696842573.5901945-CDS-E_fasciculatus_S2_contig923:23087..231681696842573.5901945-CDS-E_fasciculatus_S2_contig923:23087..23168Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig923 23088..23168 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig923.17294.1prot_E_fasciculatus_S2_contig923.17294.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig923 21177..23168 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig923.17294.1

>prot_E_fasciculatus_S2_contig923.17294.1 ID=prot_E_fasciculatus_S2_contig923.17294.1|Name=mRNA_E_fasciculatus_S2_contig923.17294.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp
VRIINGEIVSDNDPRVAGPQRRAGGGGAGGGGGGGQGRGGYGRVASLLDP
PSTTEASGGGARGPAGASTGPLDKLAEMIGVQGRTVTIPGALGIQEQQVP
LIYLMIAALVVLFGGWKVAALIVFAYVITNQRPQGR*
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mRNA from alignment at E_fasciculatus_S2_contig923:21177..23168+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig923.17294.1 ID=mRNA_E_fasciculatus_S2_contig923.17294.1|Name=mRNA_E_fasciculatus_S2_contig923.17294.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1992bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig923:21177..23168+ (Ectocarpus fasciculatus EfasUO2)
GTGCGAATCATTAATGGGGAAATCGTCAGCGACAACGACCCTCGAGTCGC
CGGACCGCAGCGGCGAGCAGGAGGAGGAGGAGCAGGAGGTGGAGGTGGCG
GGGGGCAGGGAAGGGGGGGGTACGGCCGCGTTGCGTCCCTGCTCGACCCG
CCATCTACTACAGAAGCAAGTGGCGGGGGTGCAAGGTAATTGATGTGATA
CCGCGTACCGTCTACTTTGTGAACCGATCAGTGATGCCAGCTGGTATGTA
GAACATCTACGGTACTGTTGTTTTTCGAGAGTGAGTTGGGCTGAAGAGAA
CTTATGGGATATCGAGATTGGTAGACAAGGCTTATGAACCTACTGCCCCT
ACGCAAATACCAGAACCTTGCATTACGTTCATGTCCTTCGAGACCAGCCA
GCCATAAATGCCCTGAGTCAAAGCATGCCACAACCTCACTGTCTTGGGAT
GGCGTAGTCCGATGCGTGAATGCCTGGAAGTACCTCCCTGTCCAAGCGAG
CCATAGCGAGCACCTACTCTCTAACCACGAGAAAAATATCATCGCCCGCC
GCTGCCATGAATGCCACTTCAAAGTAGGCAGTGGTTCGTTCATCCCGGCC
AAACGGAAAAACTGTCCTGTTTGTCAATTGTCGGGCGCACAGCCGACGTT
GTTTTTCCCCACCGCTGTGCGTACGATTCAACGTCCATCGTCCACCCACA
CAAGGGGGCCAGCAGGAGCGTCGACCGGGCCCCTGGACAAACTGGCGGAG
ATGATAGGAGTGCAGGGGCGTACCGTGACCATCCCCGGCGCGCTGGGCAT
ACAGGAGCAGCAGGTCCCCCTCATCTATCTCATGATTGCTGCGTTGGTGG
TGAGTACATGTAGTGGAACGCTATGGGAATCTTCTCCTCATGTTACTGCT
GCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCTGGCTCCATCAGTCTGAAGCAATTACCCCGAAGCAGA
CTCGCGTCATATCGGCCCTTCATGTGATAGTTGCAGGTTATATTTGGTAC
GTGGATGGTTTGTTCGATGTTGTAGAGCGATAAAACACGCGCGGGGTGCC
AGCCTCTACTCTTGCGCCACCTTGACCGCCGCTGCGTGTAGCTTGGTAGG
GTTGTTATGAACCGGTTCTCGTAGCCTTTGCCGAAGCTCGGCAGGAACGC
CCCCAGCCCCCTGCTTCCCTCTTCCCTGGTCCAAAAGTACAATCGTATGA
ATCACGCGGCGATTTTATTTCATTTCCAGTGCCTTGCGATCTTCCACACG
CACGCCGATCTTAAGTACAACGGCCGCCAATGCTCGGGAACTTGCAGCAA
GCAAAATAATTATGACCCCCAGCTGCCTATTTAGCCGTCGGAATAACAGA
CATAGGCATGTGAAGGTACGGGGGGCTACGAAGCTGCCCACGTCCCCCCG
GTCAATTTTCTGGGAATCGTCATTAGCCGGTCATCGCACAACCCCTAGAG
TGACTTTCAAAGCTCGACTGCTCCATTCACAACCAAGATATTTTGAAAGC
CGACCGACGGTTCTAAGGAAAACTCAAGATGACACATTTCTAAAATCACC
GCTGTCGGAATAGGCACGCTATTGATCGGGGAGCAAAAGAGGGTTGGAAA
GGTCGTGCTCTAATAGGCGGTGTGCGACGGCCTAATGGCCTTGTATGCGC
ACGCCTAGTCTTGCCTTTTGGCGCGGTGAAAAATCTCTCGGTTTTCCAGG
CTAACTGACATAACTTTTGTGTACTCGTATGCCATACTTCGACCTCTTGG
TGTTCAGAGAGTAGACGGCGCGCTCAACGTACCGATCCCTCTGTCCCCTG
TCTGTTTTCAGGTTCTTTTCGGGGGCTGGAAGGTCGCGGCACTTATCGTG
TTCGCCTATGTCATCACCAACCAAAGGCCCCAGGGCCGGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig923:21177..23168+

>mRNA_E_fasciculatus_S2_contig923.17294.1 ID=mRNA_E_fasciculatus_S2_contig923.17294.1|Name=mRNA_E_fasciculatus_S2_contig923.17294.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig923:21177..23168+ (Ectocarpus fasciculatus EfasUO2)
GTGCGAATCATTAATGGGGAAATCGTCAGCGACAACGACCCTCGAGTCGC
CGGACCGCAGCGGCGAGCAGGAGGAGGAGGAGCAGGAGGTGGAGGTGGCG
GGGGGCAGGGAAGGGGGGGGTACGGCCGCGTTGCGTCCCTGCTCGACCCG
CCATCTACTACAGAAGCAAGTGGCGGGGGTGCAAGGGGGCCAGCAGGAGC
GTCGACCGGGCCCCTGGACAAACTGGCGGAGATGATAGGAGTGCAGGGGC
GTACCGTGACCATCCCCGGCGCGCTGGGCATACAGGAGCAGCAGGTCCCC
CTCATCTATCTCATGATTGCTGCGTTGGTGGTTCTTTTCGGGGGCTGGAA
GGTCGCGGCACTTATCGTGTTCGCCTATGTCATCACCAACCAAAGGCCCC
AGGGCCGGTAG
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