mRNA_E_fasciculatus_S2_contig9226.17289.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9226.17289.1
Unique NamemRNA_E_fasciculatus_S2_contig9226.17289.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2P2_9PHAE)

HSP 1 Score: 573 bits (1477), Expect = 6.420e-194
Identity = 300/355 (84.51%), Postives = 316/355 (89.01%), Query Frame = 2
Query:  494 GIVYGFYRLEIQTKKVGPSAPSGQELSSDATLAFGDDTDPTYYCHWYCTVRSALDSLNQNDGVPRDPNSPHEILKLIPEEFLEEHLTERHVQNRQDLNELVLDEGRRPYATLQGHGKLFLCSDKSVVVTKEHIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERAASVLVLGKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASATNAGNKV 1558
            G +   + L+   ++ G SAPS Q LSS+AT A  DDT+PT          SALDS  Q+DGV +DPNSPHEILK IPEEFLEE+LTE H+QN QDLNELVLDEGRRPYATLQG GKLFLCSDKSVVVTKEHID VVGRLDLEDKFA DNRAGVPGQLHRISVMRSRE RRIFGVTLRIGRYF GSA LVDD+LFHVQ SPDKPERAASVLVLGKPGSGKTTVLRDICRKIS+EQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVP+KA QHNVMKEALQNHTPQTIVVDEVS+KNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASATNAGNK+
Sbjct:  456 GRILTSFDLKQARERGGLSAPSRQALSSNATPAIFDDTNPT----------SALDSSKQSDGVAQDPNSPHEILKRIPEEFLEEYLTESHLQNLQDLNELVLDEGRRPYATLQGRGKLFLCSDKSVVVTKEHIDMVVGRLDLEDKFAGDNRAGVPGQLHRISVMRSREARRIFGVTLRIGRYFSGSASLVDDVLFHVQGSPDKPERAASVLVLGKPGSGKTTVLRDICRKISQEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPNKAGQHNVMKEALQNHTPQTIVVDEVSDKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASATNAGNKI 800          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FII7_ECTSI)

HSP 1 Score: 414 bits (1063), Expect = 1.320e-139
Identity = 212/220 (96.36%), Postives = 213/220 (96.82%), Query Frame = 2
Query:  899 VVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERAASVLVLGKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASATNAGNKV 1558
            VVGRLDLE KFA DNRAGVPGQLHRISVMR REGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQ SPDKPERAASVLVLGKPG GKTTVLRDICRKIS+EQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDK DQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMA ATNAGNKV
Sbjct:    2 VVGRLDLEGKFAGDNRAGVPGQLHRISVMRGREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQGSPDKPERAASVLVLGKPGCGKTTVLRDICRKISQEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKTDQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMAIATNAGNKV 221          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G6R4_ECTSI)

HSP 1 Score: 231 bits (588), Expect = 1.300e-67
Identity = 117/233 (50.21%), Postives = 169/233 (72.53%), Query Frame = 2
Query:  827 LQGHGKLFLCSDKSVVVTKEHIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERA----ASVLVLGKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQ-SRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSV 1510
            ++G GK++LC D+ V+VT+ H++ VVG+L+    F  DN AG  G LHR+ VMR + G+ I+GVT+R+GRY  G A +VDDLLF+  ++    +RA    AS+LVLG+ G+GKTT++RD+CRK+S  +TVVIVDT ++I G G +PH  AIG+ SRR+MVP    QH V+ +A +NH+PQTIVVDE+S++ +  AC+ +KARG+RVVA A GDL  +L++PE+   +GG   +
Sbjct:   13 VKGRGKVYLCKDRGVLVTRYHLNCVVGKLEHLGLFGRDNMAGFDGLLHRVGVMRDKGGK-IYGVTIRVGRYAKGMADMVDDLLFNHHTATGSGKRASQAPASILVLGRHGAGKTTLVRDMCRKLSSHETVVIVDTRSDIGGAGVVPHRRAIGEESRRVMVPQGMQQHEVILQAYRNHSPQTIVVDEISSQLDIEACMAVKARGIRVVAGAVGDLPYVLDSPEIGAALGGLEDI 244          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW61_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 1.730e-63
Identity = 124/272 (45.59%), Postives = 183/272 (67.28%), Query Frame = 2
Query:  707 EILKLIPEEFLEEHLTERHVQNRQDLNELVLDEGRRP--YATLQGHGKLFLCSDKSVVVTKEHIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERA-ASVLVLGKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQ-SRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSV 1510
            E+LK +P+ F+ + +  R                R+P  Y T +G GK++LC D+ V+VT+ H++ VVG+L+    F  DN AG  G LHR+ VMR + G+ I+GVT+R+GRY  G A +VDDLLF+   +  +  +A AS+LVLG+ G+GKTT++RD+CRK+S  +TVVIVDT ++I G G +PH  AIG+ SRR+MVP    QH V+ +A +NH PQT+VVDE+S++ +  AC+ +K+RGVR+VA A GDL  +L++PE+   +GG   +
Sbjct: 1594 ELLKHMPKVFVNDIMAHR----------------RKPPKYCTCRGRGKVYLCKDRGVLVTRYHLNCVVGKLEHLGLFGRDNMAGFDGLLHRVGVMRDKGGK-IYGVTIRVGRYAKGMADMVDDLLFNHHVAKKRASQAPASILVLGRHGAGKTTLVRDMCRKLSSHETVVIVDTRSDIGGAGVVPHRGAIGEESRRVMVPQGTQQHEVILQAYRNHNPQTVVVDEISSQLDVEACMAVKSRGVRIVAGAVGDLPFVLDSPEIGAALGGLEDI 1848          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2L513_9EUKA)

HSP 1 Score: 218 bits (556), Expect = 3.580e-62
Identity = 136/327 (41.59%), Postives = 194/327 (59.33%), Query Frame = 2
Query:  695 NSPHEILKLIPEEFLEEHLTERHVQNRQ----DLNELVLDEGRRPYATLQGHGK----LFLCSDKSVVVTKEHIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLF--------------HVQSSPD------------KPERAA-----SVLVLGKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASATNAGNKV 1558
            +S  EI KL+PEEF      +R V        ++ +++LD+GR P+A +    +     FL  D  + V   HID VV ++    +F  D RAG+ G LHRIS M++ +G  I+G+T RIGR F     L+ DLL               HV+++P              P + +     S+LVLG PGSGKTT++R+I R ++++  V +VDTSNEI GDG IPH +++G +RRMMVP   +Q NVM E LQNHTP  IV+DE+  +NE  A   +K RGVR++ASAHG+L++L++N +LN L+GG  +VTLGD  A  TN  +K+
Sbjct:   29 SSADEIFKLLPEEF------KRKVSPADFEYANIRDIILDKGRLPFAWIMFPNRPPQRKFLSDD--IKVDSTHIDSVVSKIG---QFGPDCRAGINGSLHRISCMKNLQGD-IYGLTFRIGRSFTKGTHLIMDLLLGNNVSLPNTKFTPPHVENNPTPLNKPFGTLGLPNPAKKSQFVGNSILVLGGPGSGKTTIIREIVRILADKFNVCVVDTSNEICGDGKIPH-SSVGLARRMMVPSVEEQGNVMVECLQNHTPDVIVIDEIGRRNEVEAAATVKQRGVRLIASAHGNLETLVKNKQLNGLIGGVETVTLGDMAAKKTNNNSKL 342          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: Hypothetical (protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6V2IJU1_9STRA)

HSP 1 Score: 221 bits (562), Expect = 4.350e-62
Identity = 128/279 (45.88%), Postives = 182/279 (65.23%), Query Frame = 2
Query:  707 EILKLIPEEFLEEHLTE-RHVQNRQ---DLNELVLDEGRRPYATLQGHGKLFLCSDKSVVVTKEHIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERAASVLVLGKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMA 1531
            +++ L+PE+ L + + +  H+       DL ++ LD GRR    + G+ ++FL  D++ +VT E ID +V +L     F +DNRAG+  +LHRIS M +R+G  + G+++R+GR+F G+A ++ DLL       DK     S+L+LG+PGSGKTT++R+  R ++    V +VDTSNEIAGDG IPH   IG +RRMMVP    Q +VM E +QNHTP  +V+DE+    E  A   +K RGVR++ASAHGDL+ LL+N EL  LVGG  SVTLGDA A
Sbjct:  159 DLINLLPEDLLSKLVQKGTHIPTHMAEYDLVDINLDVGRRACCWM-GNDRVFLSDDENRLVTMEEIDCIVSKLG---GFGTDNRAGLEQKLHRISGMCNRKGE-VIGLSMRVGRWFEGNAAMLVDLLL----GSDK-----SILILGEPGSGKTTIVREAVRVLASRHNVCVVDTSNEIAGDGDIPH-PCIGDARRMMVPSLDAQSSVMVECVQNHTPHIMVIDEIGRPREVEAARTVKQRGVRIIASAHGDLRKLLKNKELRGLVGGVESVTLGDAAA 422          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: Single-stranded (nucleic acid binding R3H domain-containing protein n=1 Tax=Bathycoccus prasinos TaxID=41875 RepID=K8F533_9CHLO)

HSP 1 Score: 220 bits (560), Expect = 5.200e-62
Identity = 139/306 (45.42%), Postives = 192/306 (62.75%), Query Frame = 2
Query:  638 TVRSALDSLNQNDGVPRDPNSPHEILKLIPEEFLEEHLTERHVQNRQDLNELVLDEGRRPYATLQGHGKLFLCSD--KSVVVTKE---HIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERAASVLVLGKPGSGKTTVLRDICRKISEE--QTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDL-QSLLENPELNTLVGGTTSVTLGDAMA 1531
            T  S + + N  D V +D  +  E+L ++PE+  E+     H   R  L E+VLD GR+P A   G   +   S+  +  VVT+E   H +RVVG      +F  DNRAGV G LHRIS +R+R G+ I G+T R+GR   G   ++ D+L          +   SVL LGKPG GKTTV+R+I R +S++  + VVI+DTSNEI GDG IPH  AIG +RRM VP+ ++QH VM EA++NHTP+ I+VDE+  + EA AC  I  RGV+++ +AHG L ++L++NP L+ LVGG T+VTLGD  A
Sbjct:   12 TNSSGISNKNDGDVVIQDDLT--EMLSIVPEDVREKISKHAH---RSKLLEIVLDLGRQPEARFSGMEDVKKQSETLRDDVVTQEELDHAERVVG------EFGGDNRAGVTGTLHRISCIRNRSGK-IIGLTCRVGRAVTGHVDMIADVLNR--------DNGESVLFLGKPGVGKTTVIREIARVLSDDLQKRVVIIDTSNEIGGDGDIPH-PAIGSARRMQVPNPSEQHKVMIEAVENHTPEIIIVDEIGTEMEALACRTIAERGVQLIGTAHGRLLENLIKNPTLSDLVGGVTTVTLGDDEA 296          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: AAA (domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FZ72_9STRA)

HSP 1 Score: 216 bits (549), Expect = 6.340e-62
Identity = 121/250 (48.40%), Postives = 165/250 (66.00%), Query Frame = 2
Query:  782 LNELVLDEGRRPYATLQGHGKLFLCSDKSVVVTKEHIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERAASVLVLGKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMA 1531
            L+++VLD GRRP+   +   ++FLC D+  +V    ID +  +L    KF SDNRAG+ GQLHR S MR R+ + I G+T+R+GR   G+A ++ DLL       DK     S+L+LG+PGSGKTT++R+  RK++E +  ++ DTSNEIAGDG  PH   IG +RRMMVP    Q   M E +QNHTP  +V+DE+    E +A   +K RGVR++ASAHGDL+ LL+N +L  LVGG  SVT+GD MA
Sbjct:   19 LSDIVLDIGRRPHCWTRDC-RVFLCDDEFKLVQHSEIDEISAKLG---KFGSDNRAGLNGQLHRFSAMRDRDDQ-IAGITIRVGRNVNGNAAMLMDLLL----GSDK-----SILILGEPGSGKTTIVREAARKLAETKNAIVADTSNEIAGDGTHPH-QCIGLARRMMVPSLDKQSATMIECVQNHTPHVMVIDEIGRPKEVQAARTVKQRGVRMIASAHGDLRRLLKNKDLVGLVGGIESVTIGDDMA 253          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0A235_9STRA)

HSP 1 Score: 226 bits (576), Expect = 1.250e-60
Identity = 135/277 (48.74%), Postives = 183/277 (66.06%), Query Frame = 2
Query:  707 EILKLIPEEFLEEHLTERHVQNRQDLNELVLDEGRRPYATLQGHGKLFLCSDKSVVVTKEHIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERAASVLVLGKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASA 1537
            EIL L+PE+ L   LTE  V +   L ++VLD GRRP+A + G  +LFL  D   +VT+E +D +V ++     F SDNRAG+  QLHRIS +R+R    I G+T+R+GRY  G+A ++ D+L     + DK     ++L LG+PG GKTT++R++ R+++    V IVDTSNEIAGDG IPH   +G SRRMMVP    Q  VM E +QNHTP+ +V+DE+   NE  A    K RGVR++ASAHGDL+ LL+N  L  LVGG  SVT+GDA+A +
Sbjct:   82 EILSLLPED-LATPLTEPTVAS--GLLDIVLDRGRRPWAWVNG-SRLFLV-DNDRLVTQEDLDGIVEKVG---GFGSDNRAGLERQLHRISAIRNRTSD-IMGLTIRVGRYIEGNASMIADIL----ENQDK-----NILFLGEPGCGKTTIVREVARQLASGHNVCIVDTSNEIAGDGDIPH-PCVGLSRRMMVPSLDQQARVMVECVQNHTPEIMVIDEIGRPNEVEAARTCKQRGVRMIASAHGDLRKLLKNKPLRGLVGGVESVTMGDALAKS 339          
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1EUK0_9RHOD)

HSP 1 Score: 211 bits (536), Expect = 1.900e-60
Identity = 120/269 (44.61%), Postives = 171/269 (63.57%), Query Frame = 2
Query:  788 ELVLDEGRRPYATLQGHG---KLFLCSDKSVVVTK---EHIDRVVGRLDLEDKFASDNRAGVPGQLHRISVMRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPER--AASVLVLGKPGSGKTTVLRDICRKIS-----EEQTVVIVDTSNEIAGDGHIPHLAAIGQSRRMMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVVASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASATNAGNK 1555
            ++ LD G RPY  +   G   ++FL +D   VVTK   E ++ +  +L    +F  DNRAG   +LHR+S +R+ +   I G+T+RIGR +  ++ L+DDLLF       +PER  + S+L+LG+PG GKTT++RDI RK+S         V ++DTSNEI GDG I H +++G + RMM+P  + Q  VM E LQNHTP  I++DE+  K E +A   +K R VR++ASAHGD +SL+ NP+L  L+GG  +VTLGDA + A N G K
Sbjct:    3 DIRLDYGERPYCWVSNEGTKERVFLVNDGPGVVTKVDRELLESITSKL----RFRGDNRAGFDRELHRVSAIRNTDDT-IIGLTMRIGRTYENNSYLIDDLLFQ------QPERGQSPSILILGRPGCGKTTIIRDIARKLSISNYSHNNNVWVIDTSNEIGGDGDIKH-SSLGLASRMMIPTGSSQKEVMVECLQNHTPDVIIIDEIGRKEEVQAAKTVKERDVRLIASAHGDFESLMRNPDLVGLIGGLQTVTLGDAASKAENDGRK 259          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9226.17289.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
AAA6.420e-19484.51domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
AAA1.320e-13996.36domain-containing protein n=1 Tax=Ectocarpus silic... [more]
AAA1.300e-6750.21domain-containing protein n=1 Tax=Ectocarpus silic... [more]
AAA1.730e-6345.59domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
AAA3.580e-6241.59domain-containing protein n=1 Tax=Arcella intermed... [more]
Hypothetical4.350e-6245.88protein n=2 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Single-stranded5.200e-6245.42nucleic acid binding R3H domain-containing protein... [more]
AAA6.340e-6248.40domain-containing protein n=1 Tax=Fragilariopsis c... [more]
Uncharacterized1.250e-6048.74protein n=1 Tax=Thraustotheca clavata TaxID=74557 ... [more]
Hypothetical1.900e-6044.61protein (Fragment) n=1 Tax=Timspurckia oligopyreno... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9226contigE_fasciculatus_S2_contig9226:304..5907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score365.5
Seed ortholog evalue1.5e-98
Seed eggNOG ortholog2880.D7FII7
Model size1561
Hectar predicted targeting categoryother localisation
Exons13
EggNOG free text desc.ATPases associated with a variety of cellular activities
EggNOG OGs2QQ4X@2759,COG3854@1
Ec32 ortholog descriptionAAA (ATPases Associated with a wide variety of cellular Activities) superfamily
Ec32 orthologEc-28_000420.2
Cds size579
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842572.7440214-CDS-E_fasciculatus_S2_contig9226:303..4481696842572.7440214-CDS-E_fasciculatus_S2_contig9226:303..448Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9226 304..448 -
1696842572.7558012-CDS-E_fasciculatus_S2_contig9226:745..8471696842572.7558012-CDS-E_fasciculatus_S2_contig9226:745..847Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9226 746..847 -
1696842572.7673316-CDS-E_fasciculatus_S2_contig9226:1476..15921696842572.7673316-CDS-E_fasciculatus_S2_contig9226:1476..1592Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9226 1477..1592 -
1696842572.7843418-CDS-E_fasciculatus_S2_contig9226:1939..20401696842572.7843418-CDS-E_fasciculatus_S2_contig9226:1939..2040Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9226 1940..2040 -
1696842572.7960293-CDS-E_fasciculatus_S2_contig9226:2283..23831696842572.7960293-CDS-E_fasciculatus_S2_contig9226:2283..2383Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9226 2284..2383 -
1696842572.8056133-CDS-E_fasciculatus_S2_contig9226:2763..27781696842572.8056133-CDS-E_fasciculatus_S2_contig9226:2763..2778Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9226 2764..2778 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842572.8164585-UTR-E_fasciculatus_S2_contig9226:2778..29271696842572.8164585-UTR-E_fasciculatus_S2_contig9226:2778..2927Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9226 2779..2927 -
1696842572.8338346-UTR-E_fasciculatus_S2_contig9226:3273..33471696842572.8338346-UTR-E_fasciculatus_S2_contig9226:3273..3347Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9226 3274..3347 -
1696842572.84676-UTR-E_fasciculatus_S2_contig9226:3828..39681696842572.84676-UTR-E_fasciculatus_S2_contig9226:3828..3968Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9226 3829..3968 -
1696842572.857367-UTR-E_fasciculatus_S2_contig9226:4261..43471696842572.857367-UTR-E_fasciculatus_S2_contig9226:4261..4347Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9226 4262..4347 -
1696842572.8665833-UTR-E_fasciculatus_S2_contig9226:4485..46611696842572.8665833-UTR-E_fasciculatus_S2_contig9226:4485..4661Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9226 4486..4661 -
1696842572.8762739-UTR-E_fasciculatus_S2_contig9226:4894..49631696842572.8762739-UTR-E_fasciculatus_S2_contig9226:4894..4963Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9226 4895..4963 -
1696842572.88856-UTR-E_fasciculatus_S2_contig9226:5134..52281696842572.88856-UTR-E_fasciculatus_S2_contig9226:5134..5228Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9226 5135..5228 -
1696842572.8974822-UTR-E_fasciculatus_S2_contig9226:5713..59071696842572.8974822-UTR-E_fasciculatus_S2_contig9226:5713..5907Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9226 5714..5907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9226.17289.1prot_E_fasciculatus_S2_contig9226.17289.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9226 304..2778 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9226.17289.1

>prot_E_fasciculatus_S2_contig9226.17289.1 ID=prot_E_fasciculatus_S2_contig9226.17289.1|Name=mRNA_E_fasciculatus_S2_contig9226.17289.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=193bp
MRSREGRRIFGVTLRIGRYFPGSAGLVDDLLFHVQSSPDKPERAASVLVL
GKPGSGKTTVLRDICRKISEEQTVVIVDTSNEIAGDGHIPHLAAIGQSRR
MMVPDKADQHNVMKEALQNHTPQTIVVDEVSNKNEARACLDIKARGVRVV
ASAHGDLQSLLENPELNTLVGGTTSVTLGDAMASATNAGNKV*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9226:304..5907-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9226.17289.1 ID=mRNA_E_fasciculatus_S2_contig9226.17289.1|Name=mRNA_E_fasciculatus_S2_contig9226.17289.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5604bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9226:304..5907- (Ectocarpus fasciculatus EfasUO2)
ACGACGCAGGTGGTGTACGACTTCAGCAACAGCGCAATTGCCTTGAGGCG CCAGTTTGGCGCGGGGTTCATGATTGGTAAAATTCTGGACCTCCAGCTGG CGTTTGAAGCTCTCCACGGGCGCTTTGGTGCGGATGTCGTGACAGTCTTG AGAGCTTTCGGGCAGCAGGCTTCCTACAGCGACGCCGCCTTCAGGTGCTG ATTGCGTCCCACTACTCATTTTTATGACGCCGGGACCGCTTGGTGTGCCG CTTCGCTCTGTTAACTGGCATCGGTTTTGGTTGTCGCGCTGCGGAAGGTG CCACTATCTACACCACTTTTTTTCCTGCTGTTACTTTTACTTGGGAAGGT GGGGAAGTTTTACTACGGCACCGTGCGCGAATCGCTGGAAGCACGTCACC TTTAACTTTGCCGTGCACGACGCTGTGCGTGCATGCGCATGCGTTGCAAT ACATGTAGCGTTGTCAGAGCACGACAGCTTTAGGCAATAATCTTACCACG TGGTCAAGAGCTCTTCTGGTAGAGATTGAGGCAAAGTAGGATATTGCGGT CTGGTTTCCACCTGCGATTTGCTCATTGGCAAGCAAGTGACTGTTTTGGT GCGAATTCACGCCCACAGCTAAATTGTTCTTCCTGGCTTTTTGTTTTTCC GCACGACGGCATCGCACCACGTGTTGCAGGTCACTCAGCTGTGAAGAAGC GTCAACCATGAGGCGACCTATTGACACGACAAAATTGGGGTTGGCAGCAC AGGCAGTCATATCGCTTGCCAAGGTGTGCCGTCATCGCTTTTCCGCTGCT TTCAGAACAAATAGGAATCGATTCTCGACGCCAACCAGTGCTTTTCAACT CGACGCCCCATGTGCTGCAGCATAAGCAAGGCAGCTGGTGGATGCAGTAG TGATTTCCTCGTATGTATTGTCGTTGTTCTGAATTCGTCGCCAGGTCACG GAAAGCGCGGTCTCGAGTTTATCCAAGAGAGGGGAGAAGAACATCGTGCT GGAAGCTTCTCAGGTCCGGAACGACCTTCATGTTAACTCCGCCATCGCAT GTGCTGTGTGGTAGATCTTACAAACGTACGATACGATGGCAACGGGACCG ACGCATGATGTTTAAACAGTATCCTCTGCGTGTTCACTCTCTAGTCGCCG GACAAAGCATGCCACAATGCCATCAATTGTACACTGTAATTTGTGTTGGG TGGTGATGCACAAGGTAGTTAATTAAGCCCCTCCCCCCTTTTCCAGCGGG TGGCGGAGTTCGCCATGTCCTCCTGTCGCCAGGACACGCGGAGGGCAGCC TTTCACAATCACGGTTCTTGCTGGGGAGGCGGGGTCGGGAGAATTTTGAC CAGCTTCGAGCTCAAGCAGGTATTACCCACCCGGAATCGTGTATGGTTTC TACAGGCTGGAGATTCAGACAAGTTCAATGTGACCTATGCTATTATGGCG GCAAACCCGCCGTCTCTAGAGGTGCTCTTTGCCGCAAATACTATACTCGA ACGCTGCACCCCTCAACGTACTTCGCCCGTTCGTTGTCCAATGGCCTCGT CAGGCCCGAGAGAAGGTCGGTCCATCGGCCCCTTCGGGACAGGAGCTGTC CTCCGACGCGACGCTTGCTTTCGGTGACGACACCGACCCTACGTATGTCC CATTATCAGGCCTAGAATTGGGGAAGTAGCTTCACGTCAGATGCAAAATG TAGAGAGTTCGAGCTATACAGCACGTGGCTGGACAAGCAACGTAGCGCAT GACCGTGCCATGCTTTGAATATGCCTGGGTGGACGCATGGTTCGTGTTGT CGGTACATGGCACGATGAGCATGTGGCAGCATTTGGCTGTTCGGCTGTGA ATCTGTGTGTTGGCCGGGAGACATGCCATTGGACTACGCTTGATTCGCTC TCTTCGTCCCCCCTGTAAAAGCCTGATTGCTGACCTCAGTATTGCCATTG GTACTGCACTGTTAGGTCGGCCCTTGACAGCTTGAATCAGAATGATGGCG TTCCGCGAGACCCCAACTCTCCCCACGAGATCCTGAAGCTTATTCCCGAA GAATTTCTCGAAGAACATCTGACAGAAAGGTGAGCGGCGCGTGATGTTGG AGAGCGAATAGATTCGGCACGGAGCTTGTGTTTAGTACGTTGGAGCTGAC ACGTGGCTCCGGCTGGATGCGACAGCCAGCAGCCTGTCCCGTGTTCATGT TCCAGTCGGCTGGGATATGACGGCTCGAAAGCTTGTCTCTCCCCGTGTTC GTCAAAGCGAGAACGTACCACGATGGGCCGTTGATGGTCGCTTGTCACTT ACAACACGCGACAACTCCGCATTGGATTGAAAAGACCATGACGCCCCCAA ACCATGTTAAAATTTTCCTCATGTACCAGAGCTAGGTCGCATGGCCTTTG TAAGAAACGGCCATTTGTCCTTGTGGATGGCTCTGTTTGGTGGTTTCTTT TCTAGCTCGCTTTCCCCACTGATTCACGAAAGACGCGGAGAGAATTTCAC GTGAGTCGCATGTAAATACTAAAGCGTTCAGCCTCCACGTGTGAATGTTT TTATGCCCAGACACGTGCAGAACCGACAGGATCTGAACGAGCTGGTTCTC GACGAGGGAAGGAGGCCCTACGCCACTCTGCAAGGTATGGGTTCGAGTAC AGATCTGATGTACGCAGCACCTACGGGGCTTATCTAGCCGACCTGGCAAC GATAACGGACCCTTCTCTTCAACGCTGGCTATGAAGACCATTTTAAAAAA TAGCACCCTTTCTGATGCCTGAGCACTTCTCCTGCTATTGTGGTTCTGAC TACACAATCTTGAATGCGACGCGAGCCAGTTCTCTGAACGCGTGGTGCAT GCCGTATAATTTGCACACAAGGAGACAGTACCCGATATTGTCATCATTCG AGCAGGCGTGTTCCTCGAACAATCGTGGTCGTTTAATCTCCGCACGACGG CCTGCGTACTCTCTCTCTCTCTACGCTCAGGGCACGGAAAGCTGTTCCTG TGCAGCGACAAGAGCGTGGTCGTGACCAAAGAACACATCGACAGGGTCGT TGGGCGGCTCGACCTCGAAGACAAGTTCGCGAGTGACAACCGAGCGGGCG TCCCGGGGCAGCTGCATCGCATCAGCGTTATGCGGAGTAGGGAGGTAACG ATACAGCCGCTTTCGAGCGCCCAGCCGACATCAACGCCTGTCGCTCGTCT ACATGTTCTTTCTCCGCATTCGAGACGAATTTCGTATCGTTTGTCAAAGC GCCGCTGGTGGAGCGCGTGCGCCGCGTAGCGCAGTTCTGTCGATGATATA TGATGGCGGGACGATTGGCTTGTGGACAAGTGTGTGACCGGCCGATGGCA TGCGCTCTCGTTGGCACGAACGTGGCAGGTGTCCTGCGTGACTGGCGCAT CCGCTTGTCCTCGCGGTTGAAACTTGCGCCGTTGACCCAAAGTTCGTCGA AGACAAACGAAGGGAGGTCGTGTTTTCAAGCGATTTTTTTGTGTACTCGT ATGTTGTGACCGGATGTTATACAGGGGAGGCGGATCTTCGGCGTGACTCT GCGGATCGGTCGTTACTTCCCGGGCAGTGCAGGCTTGGTCGACGATCTGC TCTTCCACGTGCAGAGCAGCCCCGGTGAGCACACGCTTGTGCATCCCATC CACATTTGCTGAGTGGCCCCTAGAGCAATGCCCCCGCGAAGGCTCTGTCT GACCAGTCTATTTCTCCGAGAAATCGCGAGCAACACCCACTTTTTACGCT ATATTACTTGCACTGACGCAATTCGCATATTTTACCAGTGATTGTCGGGC ATTCGCCCGCCCTTACCAGCAACCACGCGCAAACATTGGCCACCACCGCT CTCCTCCGTCACATCAGACAAGCCCGAGCGTGCCGCTTCTGTGCTTGTGC TGGGCAAGCCAGGATCTGGCAAGACCACCGTGCTTCGCGACATCTGCCGA AAGATCTCCGAGGAACAGGTTGTCATTTGCTCTAACAACTCTGCTGTTAC CCTGTGTTGGACACGCACGCACTCCGTGCAGAAGGCTTGGCTTTCGCCTC GTTGTTGTTCCAGTGACGAGGTGTTGATTTTTCGACCATGGGTGGTGTGC GCTTGCCTGTGTCGATACCACACTCGCACACCAGGTATGCGACAAGATGA GGGCCAGATATTGTGGGAGACGGGATGTTTTTTGTAGCAAGTGAGCTTCG CAATCGCCCTAGCCGGACGAGTACCGTCTACTTCATCCCCTGGTTAGGCC GTCAACGATCTCATGAGTATGACTGAGTCCCCGCTCTCTGTTGACGCTAC CTGCCCCATGGTCAGACTGTGGTGATCGTGGACACGAGCAACGAGATTGC CGGTGACGGCCACATCCCTCACCTCGCGGCCATCGGACAGAGCCGGAGGA TGATGGTTCCGGACAAGGCAGACCAGCACAAGTAAGCCTCTCTTCCACTG CTCCAAACGCGGTACGCGCGCGTCGAGCTGCTGCTCGCCGGGGTTCACTC ACGATGGCGTCGGTCCTTCTTGTTGGTGTACAATAGTTGCCCTTGTTTCG AGGGGTGAGACAGACAGGTTCCAACAGTCACCCATCCACACGCAGTCACC TTCACACATTCTTACTGTTTCAAGTATCGACCGACGTGATCCTGGAGACA TGTCTCCGGTGTGTGTCGCTCGTTGCCGTGTGCTTGAATGAAAAGGCTTC CGCGTTATTGGCATTCTGCGTACGTTGGCTTGCATGTGCTGATGTGCGTG AATGTTCTCGGTTCTTTACTTACTCGCTAGCATCGAAAGGGACAACGATT CGGGGTGTAACGTAGTGAGTGGAGGTGCGACCATTCTGTGGGTGGGTGTA GCTGTGCTACAGCGTCATGAGGCTTATCTTTCCGTTCTTGAAGAGGGGAA GATGTTGGTCGCGTGATGTTGTTTGCTCGTAGTCACCGCCACTTCTTCTT GGACGTACGTGTGTGCGAGCAGGGTTGTGCACCGCGGTATTCCGCTCATG TGGTCGTTCTGGTCGTGCTGCCTTTCCCGTGTGTGCCTTGACCTGGTGTG TGCAAATCAGCGTGATGAAAGAAGCTCTTCAGAACCACACGCCCCAGACG ATTGTGGTGGATGAGGTATCCAACAAGAACGAGGCTAGGGCATGCTTGGA CATCAAGGCTCGGTAAGACGCCCTGAGATGTAGCATCCATTGATGATATG GAGAGTGTTTTGGTACTCTTGACATGACCCGACCATCTTCAAGCGAGTCA ACGAGAGAGTGACGCCCCTGTACACCGCACTCCTGCAAACAAGCGTTGCT TGGCGTTGCGAAATAAAGTCGTTTGTTGGCACACCCGGGTAGCAGAACAG ACAAGGGCTATCACCTAAACCACCGGAGATGTGCTCGCCTGTGGGTAAAC AGAGAATATATGAAATCCTGTTTCGTTTGTCTTCTTATGGGCCGCTCCGT CGCTCCCAGAGGCGTCCGTGTGGTGGCGAGTGCCCACGGCGACTTGCAAT CGCTGCTCGAGAACCCGGAACTCAACACTCTGGTCGGAGGCACAACGAGC GTAACCCTAGGTGACGCCATGGCCAGCGCTACCAACGCGGGAAACAAGGT GTGA
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9226:304..5907-

>mRNA_E_fasciculatus_S2_contig9226.17289.1 ID=mRNA_E_fasciculatus_S2_contig9226.17289.1|Name=mRNA_E_fasciculatus_S2_contig9226.17289.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=579bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9226:304..5907- (Ectocarpus fasciculatus EfasUO2)
ATGCGGAGTAGGGAGGGGAGGCGGATCTTCGGCGTGACTCTGCGGATCGG
TCGTTACTTCCCGGGCAGTGCAGGCTTGGTCGACGATCTGCTCTTCCACG
TGCAGAGCAGCCCCGACAAGCCCGAGCGTGCCGCTTCTGTGCTTGTGCTG
GGCAAGCCAGGATCTGGCAAGACCACCGTGCTTCGCGACATCTGCCGAAA
GATCTCCGAGGAACAGACTGTGGTGATCGTGGACACGAGCAACGAGATTG
CCGGTGACGGCCACATCCCTCACCTCGCGGCCATCGGACAGAGCCGGAGG
ATGATGGTTCCGGACAAGGCAGACCAGCACAACGTGATGAAAGAAGCTCT
TCAGAACCACACGCCCCAGACGATTGTGGTGGATGAGGTATCCAACAAGA
ACGAGGCTAGGGCATGCTTGGACATCAAGGCTCGAGGCGTCCGTGTGGTG
GCGAGTGCCCACGGCGACTTGCAATCGCTGCTCGAGAACCCGGAACTCAA
CACTCTGGTCGGAGGCACAACGAGCGTAACCCTAGGTGACGCCATGGCCA
GCGCTACCAACGCGGGAAACAAGGTGTGA
back to top