mRNA_E_fasciculatus_S2_contig9224.17286.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE) HSP 1 Score: 264 bits (675), Expect = 2.550e-79 Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSGSHAEIASMLPAE 415
VLGSGASFRK FLS ILAGREPSATDKQVERAQKCQN MSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSG HAEIASMLPAE
Sbjct: 334 VLGSGASFRKNFLSPILAGREPSATDKQVERAQKCQNAMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSGGHAEIASMLPAE 471
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: SNF2 (family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA) HSP 1 Score: 189 bits (480), Expect = 5.780e-55 Identity = 103/150 (68.67%), Postives = 111/150 (74.00%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAA----------GRDSGSHA--EIASMLPAE 415
LG FR+ FLS I A REP ATD Q +AQK QNEMST+VNEFILRRTN +NAKHLPPKLVQVV CRLT VQ +IY+HLL SKEIRHILNGKQTNILSSIG+MQKLCNHPKLL GAA G H E+ASMLPAE
Sbjct: 180 ALGDQTHFRRHFLSAITAAREPDATDGQRAKAQKVQNEMSTLVNEFILRRTNTLNAKHLPPKLVQVVACRLTDVQRRIYQHLLDSKEIRHILNGKQTNILSSIGSMQKLCNHPKLLEAGAAAAAGAKRGAGGPSMAEHLAEEVASMLPAE 329
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Rad54-like (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPR5_9STRA) HSP 1 Score: 179 bits (454), Expect = 1.540e-49 Identity = 84/120 (70.00%), Postives = 101/120 (84.17%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGA 361
+LG+ FRK+ + H+LAGREP ATD ++ +AQ+CQ +MST+VN FILRRTN +NA+HLP KLVQVVCCRLTP+Q +YKHLLSSKEIRHI GKQTNILSSIGA+QKLCNHP LL E +
Sbjct: 401 ILGTPTQFRKQVVRHVLAGREPDATDAELLKAQRCQYDMSTLVNHFILRRTNTLNAQHLPAKLVQVVCCRLTPLQRNVYKHLLSSKEIRHICEGKQTNILSSIGALQKLCNHPMLLQESS 520
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGH1_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.720e-42 Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
VLG+ FRKK L IL GREPSATD+Q E+ + QN+MST VN+FILRR N +NA+HLPPKLVQVVCC LT +Q +Y+HL++SK+ +H+L+GKQ N LSSI + KL NHP+L+ +
Sbjct: 165 VLGTQEEFRKKILFPILRGREPSATDRQREKMMQIQNDMSTTVNDFILRRINTLNAQHLPPKLVQVVCCNLTEIQRNMYEHLVNSKDTQHVLDGKQVNCLSSIQMLMKLVNHPRLVAD 282
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K8W7_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.880e-41 Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
VLG+ FRKK L IL GREPSATD+Q E+ + QN+MST VN+FILRR N +NA+HLPPKLVQVVCC LT +Q +Y+HL++SK+ +H+L+GKQ N LSSI + KL NHP+L+ +
Sbjct: 274 VLGTQEEFRKKILFPILRGREPSATDRQREKMMQIQNDMSTTVNDFILRRINTLNAQHLPPKLVQVVCCNLTEIQRNMYEHLVNSKDTQHVLDGKQVNCLSSIQMLMKLVNHPRLVAD 391
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBU1_THAPS) HSP 1 Score: 152 bits (383), Expect = 7.560e-41 Identity = 75/138 (54.35%), Postives = 96/138 (69.57%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSGSHAEIASMLPAE 415
+LG+ FR+K L IL GREP AT+KQ R + QN+MST VNEFILRR N +NA+HLPPKLVQVVCC LT +Q+ +Y HL +SK ++H+L+GKQ N L SI + KLCNHP L+V + G+ IA +P E
Sbjct: 203 ILGTQEDFRRKMLYPILRGREPDATEKQKTRMMEIQNDMSTTVNEFILRRVNTLNAQHLPPKLVQVVCCNLTEIQSNMYAHLCNSKAMQHVLDGKQVNCLGSIQMLMKLCNHPSLVVNEKSSAAPGADG-IAKFMPYE 339
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: DNA (repair and recombination protein RAD54 and RAD54-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRM6_FISSO) HSP 1 Score: 153 bits (386), Expect = 2.190e-40 Identity = 70/126 (55.56%), Postives = 94/126 (74.60%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSG 379
+LG+ FR++ L IL GREP AT++Q + + QN+MST+VNEFILRR N +NA+HLPPKLVQVVCC LT +Q +Y+HL++SK+++H+L+GKQ N LSSI + KLCNHP L+ E SG
Sbjct: 378 ILGTAEEFRRRMLFPILRGREPDATEEQKRKMMQIQNDMSTIVNEFILRRVNTLNAQHLPPKLVQVVCCNLTEIQQNMYQHLVNSKDMQHVLDGKQVNCLSSIQMLMKLCNHPSLIAEEDPSTKSG 503
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDU5_9STRA) HSP 1 Score: 151 bits (381), Expect = 1.010e-39 Identity = 70/118 (59.32%), Postives = 92/118 (77.97%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
+LG+ FR+K L+ IL GREP AT KQ ++ Q MS +VNEFILRR N +NA+HLPPKLVQVVCC+LT +Q +Y+HL++SK+++H+L+GKQ N LSSI + KLCNHPKL+VE
Sbjct: 124 ILGTEEEFRRKILNPILRGREPDATVKQKQKMMDIQQNMSNIVNEFILRRINTLNAQHLPPKLVQVVCCKLTDMQRNMYQHLVTSKDLQHVLDGKQQNCLSSIQMLMKLCNHPKLVVE 241
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Hypothetical (protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4APF4_9STRA) HSP 1 Score: 149 bits (375), Expect = 6.590e-39 Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
VLG+ FRK L IL GREP AT +Q +R + QNEMST VNEFILRR N +NA+HLPPKLVQVVCC LT +Q +Y HL++SK+++H+++GKQ N L SI + KLCNHP L+ E
Sbjct: 445 VLGTLEEFRKNVLFPILRGREPDATQRQKQRMMEIQNEMSTTVNEFILRRINTVNAEHLPPKLVQVVCCNLTEIQKNMYLHLVTSKDMQHVMHGKQVNCLGSIQMLMKLCNHPSLVAE 562
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY45_9STRA) HSP 1 Score: 146 bits (368), Expect = 5.800e-38 Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 2
Query: 2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
VLG+ FRK L IL GREP A+ +Q +R + QNEMS+ VNEFILRR N +NA+HLPPKLVQVVCC LT +Q +Y HL++SK ++H+++GKQ N L SI + KLCNHP L+ E
Sbjct: 436 VLGTQEEFRKNILFPILRGREPDASPRQKQRMMEIQNEMSSTVNEFILRRINTVNAQHLPPKLVQVVCCNLTEIQKNMYSHLVTSKAMQHVMDGKQVNCLGSIQMLMKLCNHPSLVAE 553 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9224.17286.1 >prot_E_fasciculatus_S2_contig9224.17286.1 ID=prot_E_fasciculatus_S2_contig9224.17286.1|Name=mRNA_E_fasciculatus_S2_contig9224.17286.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=139bp GAWQRRVVPQEISVAHPGRARAVRHRQAGGAGAEVPERDVNGSQRVHPQAback to top mRNA from alignment at E_fasciculatus_S2_contig9224:396..2196+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9224.17286.1 ID=mRNA_E_fasciculatus_S2_contig9224.17286.1|Name=mRNA_E_fasciculatus_S2_contig9224.17286.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1801bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9224:396..2196+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9224:396..2196+ >mRNA_E_fasciculatus_S2_contig9224.17286.1 ID=mRNA_E_fasciculatus_S2_contig9224.17286.1|Name=mRNA_E_fasciculatus_S2_contig9224.17286.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9224:396..2196+ (Ectocarpus fasciculatus EfasUO2)back to top |