mRNA_E_fasciculatus_S2_contig9224.17286.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9224.17286.1
Unique NamemRNA_E_fasciculatus_S2_contig9224.17286.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KSB9_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 2.550e-79
Identity = 134/138 (97.10%), Postives = 134/138 (97.10%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSGSHAEIASMLPAE 415
            VLGSGASFRK FLS ILAGREPSATDKQVERAQKCQN MSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSG HAEIASMLPAE
Sbjct:  334 VLGSGASFRKNFLSPILAGREPSATDKQVERAQKCQNAMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSGGHAEIASMLPAE 471          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: SNF2 (family N-terminal domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHF7_9STRA)

HSP 1 Score: 189 bits (480), Expect = 5.780e-55
Identity = 103/150 (68.67%), Postives = 111/150 (74.00%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAA----------GRDSGSHA--EIASMLPAE 415
             LG    FR+ FLS I A REP ATD Q  +AQK QNEMST+VNEFILRRTN +NAKHLPPKLVQVV CRLT VQ +IY+HLL SKEIRHILNGKQTNILSSIG+MQKLCNHPKLL  GAA          G     H   E+ASMLPAE
Sbjct:  180 ALGDQTHFRRHFLSAITAAREPDATDGQRAKAQKVQNEMSTLVNEFILRRTNTLNAKHLPPKLVQVVACRLTDVQRRIYQHLLDSKEIRHILNGKQTNILSSIGSMQKLCNHPKLLEAGAAAAAGAKRGAGGPSMAEHLAEEVASMLPAE 329          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Rad54-like (protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TPR5_9STRA)

HSP 1 Score: 179 bits (454), Expect = 1.540e-49
Identity = 84/120 (70.00%), Postives = 101/120 (84.17%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGA 361
            +LG+   FRK+ + H+LAGREP ATD ++ +AQ+CQ +MST+VN FILRRTN +NA+HLP KLVQVVCCRLTP+Q  +YKHLLSSKEIRHI  GKQTNILSSIGA+QKLCNHP LL E +
Sbjct:  401 ILGTPTQFRKQVVRHVLAGREPDATDAELLKAQRCQYDMSTLVNHFILRRTNTLNAQHLPAKLVQVVCCRLTPLQRNVYKHLLSSKEIRHICEGKQTNILSSIGALQKLCNHPMLLQESS 520          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4NGH1_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.720e-42
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
            VLG+   FRKK L  IL GREPSATD+Q E+  + QN+MST VN+FILRR N +NA+HLPPKLVQVVCC LT +Q  +Y+HL++SK+ +H+L+GKQ N LSSI  + KL NHP+L+ +
Sbjct:  165 VLGTQEEFRKKILFPILRGREPSATDRQREKMMQIQNDMSTTVNDFILRRINTLNAQHLPPKLVQVVCCNLTEIQRNMYEHLVNSKDTQHVLDGKQVNCLSSIQMLMKLVNHPRLVAD 282          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K8W7_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.880e-41
Identity = 71/118 (60.17%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
            VLG+   FRKK L  IL GREPSATD+Q E+  + QN+MST VN+FILRR N +NA+HLPPKLVQVVCC LT +Q  +Y+HL++SK+ +H+L+GKQ N LSSI  + KL NHP+L+ +
Sbjct:  274 VLGTQEEFRKKILFPILRGREPSATDRQREKMMQIQNDMSTTVNDFILRRINTLNAQHLPPKLVQVVCCNLTEIQRNMYEHLVNSKDTQHVLDGKQVNCLSSIQMLMKLVNHPRLVAD 391          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CBU1_THAPS)

HSP 1 Score: 152 bits (383), Expect = 7.560e-41
Identity = 75/138 (54.35%), Postives = 96/138 (69.57%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSGSHAEIASMLPAE 415
            +LG+   FR+K L  IL GREP AT+KQ  R  + QN+MST VNEFILRR N +NA+HLPPKLVQVVCC LT +Q+ +Y HL +SK ++H+L+GKQ N L SI  + KLCNHP L+V   +    G+   IA  +P E
Sbjct:  203 ILGTQEDFRRKMLYPILRGREPDATEKQKTRMMEIQNDMSTTVNEFILRRVNTLNAQHLPPKLVQVVCCNLTEIQSNMYAHLCNSKAMQHVLDGKQVNCLGSIQMLMKLCNHPSLVVNEKSSAAPGADG-IAKFMPYE 339          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: DNA (repair and recombination protein RAD54 and RAD54-like protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KRM6_FISSO)

HSP 1 Score: 153 bits (386), Expect = 2.190e-40
Identity = 70/126 (55.56%), Postives = 94/126 (74.60%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVEGAAGRDSG 379
            +LG+   FR++ L  IL GREP AT++Q  +  + QN+MST+VNEFILRR N +NA+HLPPKLVQVVCC LT +Q  +Y+HL++SK+++H+L+GKQ N LSSI  + KLCNHP L+ E      SG
Sbjct:  378 ILGTAEEFRRRMLFPILRGREPDATEEQKRKMMQIQNDMSTIVNEFILRRVNTLNAQHLPPKLVQVVCCNLTEIQQNMYQHLVNSKDMQHVLDGKQVNCLSSIQMLMKLCNHPSLIAEEDPSTKSG 503          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Hypothetical (protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2KDU5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 1.010e-39
Identity = 70/118 (59.32%), Postives = 92/118 (77.97%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
            +LG+   FR+K L+ IL GREP AT KQ ++    Q  MS +VNEFILRR N +NA+HLPPKLVQVVCC+LT +Q  +Y+HL++SK+++H+L+GKQ N LSSI  + KLCNHPKL+VE
Sbjct:  124 ILGTEEEFRRKILNPILRGREPDATVKQKQKMMDIQQNMSNIVNEFILRRINTLNAQHLPPKLVQVVCCKLTDMQRNMYQHLVTSKDLQHVLDGKQQNCLSSIQMLMKLCNHPKLVVE 241          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Hypothetical (protein n=2 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4APF4_9STRA)

HSP 1 Score: 149 bits (375), Expect = 6.590e-39
Identity = 70/118 (59.32%), Postives = 88/118 (74.58%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
            VLG+   FRK  L  IL GREP AT +Q +R  + QNEMST VNEFILRR N +NA+HLPPKLVQVVCC LT +Q  +Y HL++SK+++H+++GKQ N L SI  + KLCNHP L+ E
Sbjct:  445 VLGTLEEFRKNVLFPILRGREPDATQRQKQRMMEIQNEMSTTVNEFILRRINTVNAEHLPPKLVQVVCCNLTEIQKNMYLHLVTSKDMQHVMHGKQVNCLGSIQMLMKLCNHPSLVAE 562          
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Match: Uncharacterized (protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YY45_9STRA)

HSP 1 Score: 146 bits (368), Expect = 5.800e-38
Identity = 68/118 (57.63%), Postives = 87/118 (73.73%), Query Frame = 2
Query:    2 VLGSGASFRKKFLSHILAGREPSATDKQVERAQKCQNEMSTVVNEFILRRTNNINAKHLPPKLVQVVCCRLTPVQTKIYKHLLSSKEIRHILNGKQTNILSSIGAMQKLCNHPKLLVE 355
            VLG+   FRK  L  IL GREP A+ +Q +R  + QNEMS+ VNEFILRR N +NA+HLPPKLVQVVCC LT +Q  +Y HL++SK ++H+++GKQ N L SI  + KLCNHP L+ E
Sbjct:  436 VLGTQEEFRKNILFPILRGREPDASPRQKQRMMEIQNEMSSTVNEFILRRINTVNAQHLPPKLVQVVCCNLTEIQKNMYSHLVTSKAMQHVMDGKQVNCLGSIQMLMKLCNHPSLVAE 553          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9224.17286.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized2.550e-7997.10protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5... [more]
SNF25.780e-5568.67family N-terminal domain-containing protein n=1 Ta... [more]
Rad54-like1.540e-4970.00protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID... [more]
Hypothetical1.720e-4260.17protein (Fragment) n=1 Tax=Odontella aurita TaxID=... [more]
Hypothetical1.880e-4160.17protein (Fragment) n=1 Tax=Odontella aurita TaxID=... [more]
Uncharacterized7.560e-4154.35protein (Fragment) n=1 Tax=Thalassiosira pseudonan... [more]
DNA2.190e-4055.56repair and recombination protein RAD54 and RAD54-l... [more]
Hypothetical1.010e-3959.32protein n=1 Tax=Leptocylindrus danicus TaxID=16351... [more]
Hypothetical6.590e-3959.32protein n=2 Tax=Pseudo-nitzschia australis TaxID=4... [more]
Uncharacterized5.800e-3857.63protein n=1 Tax=Pseudo-nitzschia multistriata TaxI... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9224contigE_fasciculatus_S2_contig9224:396..2196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size417
Hectar predicted targeting categoryother localisation
Exons4
Cds size417
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842572.503001-CDS-E_fasciculatus_S2_contig9224:395..4801696842572.503001-CDS-E_fasciculatus_S2_contig9224:395..480Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9224 396..480 +
1696842572.5145226-CDS-E_fasciculatus_S2_contig9224:805..9161696842572.5145226-CDS-E_fasciculatus_S2_contig9224:805..916Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9224 806..916 +
1696842572.525144-CDS-E_fasciculatus_S2_contig9224:1594..17231696842572.525144-CDS-E_fasciculatus_S2_contig9224:1594..1723Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9224 1595..1723 +
1696842572.5357983-CDS-E_fasciculatus_S2_contig9224:2104..21961696842572.5357983-CDS-E_fasciculatus_S2_contig9224:2104..2196Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9224 2105..2196 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9224.17286.1prot_E_fasciculatus_S2_contig9224.17286.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9224 396..2196 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9224.17286.1

>prot_E_fasciculatus_S2_contig9224.17286.1 ID=prot_E_fasciculatus_S2_contig9224.17286.1|Name=mRNA_E_fasciculatus_S2_contig9224.17286.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=139bp
GAWQRRVVPQEISVAHPGRARAVRHRQAGGAGAEVPERDVNGSQRVHPQA
YQQHQRQAPPAQARPGGVLPADAGADEDLQAPSVLEGDQAHPQRQADQHP
VQHRRHAEVVQPPEASRGRGRREGFGEPRRDRQHAACGD
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mRNA from alignment at E_fasciculatus_S2_contig9224:396..2196+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9224.17286.1 ID=mRNA_E_fasciculatus_S2_contig9224.17286.1|Name=mRNA_E_fasciculatus_S2_contig9224.17286.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1801bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9224:396..2196+ (Ectocarpus fasciculatus EfasUO2)
GGTGCTTGGCAGCGGCGCGTCGTTCCGCAAGAAATTTCTGTCGCACATCC TGGCCGGGCGAGAGCCGTCCGCCACCGACAAGCAGGTGAATGGTGAATGG TGAATGAACAGAAAAGCTGCACGGCCAGATACCGTTCCGAAATACAGACG ACGCCCGCGCTTTAGGATGGCGCCCGCACTTAAGAAGATCAGGTTTTGGT TCACTTTAGAACCTCTTAGTTCTGGTTCACTTTAGCACCTCTTGTTTTGT CTGATAGTGACGCTCAAAATATGCTACCACCGGGTGTGGTATTGTTCGCG TGTGTGGTGTGATTGTTAGATTAGTTTTTCATTTTGTGGTGTGATGTTTT TGGATGGGTGCGTTATTCTTGGTTGTCATCCGCTCCCGCGAACTCCGACC CCAACATCAGGTGGAGCGGGCGCAGAAGTGCCAGAACGAGATGTCAACGG TAGTCAACGAGTTCATCCTCAGGCGTACCAACAACATCAACGCCAAGCAC CTCCCGCCCAAGCTCGTCCAGGTCTGGGCGAAACTACCAACAATATACCC GTTGCGCTTTGTGGGAATCCCAGCTTGGAACCGGGTTGTTCCGTCTGAGC GTGTGATTTGAATGTTTCGCAGGACTCAGCATATTCCGCTATGGTTGGCG GTAGTCGCAGTTTTGAACCGGCTTGTTCTGGTCGTTGGTCTCAGAACGTG TGCACTGGATGATTTGCAGGACTCAGTATATGCCGTTGTGCTCTTCTGCG GTAGTCCCATTTTGGAACCGGATTGTTCCGGTGGTTCGTCTCTGAGCGTG ATTGGAATGGTTTGCAGGACTCAGTACATACCGGTGTGCTTTGCGGGAAT CTCAGATGTAAACCGGGTTGTTCCGGTCGTTGGACGCAGAGCGTGTAGAC TGGGTGATTTGCGGGACTCACTTTATGTTGTTGTGCTGTGCGGGAATCCC ACCTTTGAACCGGGTTGTCTTGTCTGAGAGGGTCAAGGTCTCGGTGTAGT CGTTCTCACGTAGGTGCCTTCTGGTCCGATCCATAGACCGGCAACGCCAT TGGCAGCCAGGACGGCTCTTGCCGTAAACAAGCGGTATGGCGGGCGACTG ACTCATAGAAGTAGAGAATGTTTAACGGATCCATCGGCTATGCATGCCAG CAAAGCCACAACCAACGGCAGCGGCCATGCCAACGACGGCTTTTTGCAGG TGGTGTGCTGCCGGCTGACGCCGGTGCAGACGAAGATCTACAAGCACCTT CTGTCCTCGAAGGAGATCAGGCACATCCTCAACGGCAAGCAGACCAACAT CCTGTCCAGCATCGGCGCCATGCAGAAGGTTTGCGGAGTGATGAGCACTT TTCCCTCTCGCTTGCTGCTGCTGCGAAAGTGAACGCCGTCGCTCTCGTGG TTTTGTTGGTGGTTAATTGCGGTGTTCTGCGCGCTTAGTACAACGCCCGT GCGCGGCAGGAGTACGTCGATCGATTTCGGTGGTGGTGGTGGTGGTGCTA TCGTTGTTGTTGCTGTTGCTGCTGCTGTTGTTGTTTTCGCTGTTGCTGCT GTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGCTGCTGTTGT TTTTTCGCTGTTGCTGCTGCTGATGTTGTTGTCGTCGTCGTCGTCGTCGT CGTCGGTACCATCCCTCTCCGGCGGGGGAATGTGTCCGATCTTTCTTCTG GTTGGGCAGTTGTGCAACCACCCGAAGCTTCTCGTGGAAGGGGCCGCAGG GAGGGATTCGGGGAGCCACGCCGAGATCGCCAGCATGCTGCCTGCGGAGA C
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9224:396..2196+

>mRNA_E_fasciculatus_S2_contig9224.17286.1 ID=mRNA_E_fasciculatus_S2_contig9224.17286.1|Name=mRNA_E_fasciculatus_S2_contig9224.17286.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=417bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9224:396..2196+ (Ectocarpus fasciculatus EfasUO2)
GGTGCTTGGCAGCGGCGCGTCGTTCCGCAAGAAATTTCTGTCGCACATCC
TGGCCGGGCGAGAGCCGTCCGCCACCGACAAGCAGGTGGAGCGGGCGCAG
AAGTGCCAGAACGAGATGTCAACGGTAGTCAACGAGTTCATCCTCAGGCG
TACCAACAACATCAACGCCAAGCACCTCCCGCCCAAGCTCGTCCAGGTGG
TGTGCTGCCGGCTGACGCCGGTGCAGACGAAGATCTACAAGCACCTTCTG
TCCTCGAAGGAGATCAGGCACATCCTCAACGGCAAGCAGACCAACATCCT
GTCCAGCATCGGCGCCATGCAGAAGTTGTGCAACCACCCGAAGCTTCTCG
TGGAAGGGGCCGCAGGGAGGGATTCGGGGAGCCACGCCGAGATCGCCAGC
ATGCTGCCTGCGGAGAC
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