mRNA_E_fasciculatus_S2_contig9213.17276.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9213.17276.1
Unique NamemRNA_E_fasciculatus_S2_contig9213.17276.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9213.17276.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH5_ECTSI)

HSP 1 Score: 243 bits (621), Expect = 1.980e-78
Identity = 129/137 (94.16%), Postives = 131/137 (95.62%), Query Frame = 1 
Query:    1 EVAQRLSFDWSEAITSVSSIAVADWLALKKGENLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAV 411
            EVAQRLSFDWSEAIT     AVADWLALKKGE+LGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGK+VPAKRVHTFLCKAYGVNLGPARASLRALAA IPQRHVETSIRAMVLYESFRPAV
Sbjct:  138 EVAQRLSFDWSEAITL--GRAVADWLALKKGEHLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKVVPAKRVHTFLCKAYGVNLGPARASLRALAAEIPQRHVETSIRAMVLYESFRPAV 272
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BLAST of mRNA_E_fasciculatus_S2_contig9213.17276.1 vs.
Match: Uncharacterized (protein n=1 Tax=Acidobacteria bacterium TaxID=1978231 RepID=A0A7C5Z8P6_9BACT)

HSP 1 Score: 57.0 bits (136), Expect = 2.300e-7
Identity = 45/136 (33.09%), Postives = 67/136 (49.26%), Query Frame = 1 
Query:    4 VAQRLSFDWSEAITSVSSIAVADWLALKKGENLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAV 411
            VA+RL FDW EA+T     AVA   A  KG +LGL     E ER    +        ++++ +     +T  G RA+SK + +    V  +L + +G  L  AR ++  LA + P    + +  A  LYE FRPA+
Sbjct:   20 VAERLGFDWDEALTL--GRAVAGLNAYSKGVSLGLYRPTPEGERERRRKRAKGEIVQIDLLHRAVPAVQTPEGLRALSKDQPISPPSVERYLREKFGNRLEDARRAMERLARSWPPD--DLAAHAYNLYEKFRPAI 151
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BLAST of mRNA_E_fasciculatus_S2_contig9213.17276.1 vs.
Match: Uncharacterized (protein n=1 Tax=Bryobacteraceae bacterium TaxID=2212468 RepID=A0A7Y8HYI1_9BACT)

HSP 1 Score: 56.2 bits (134), Expect = 5.100e-7
Identity = 46/136 (33.82%), Postives = 67/136 (49.26%), Query Frame = 1 
Query:    4 VAQRLSFDWSEAITSVSSIAVADWLALKKGENLGLLEADEEAERAAMEETDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVNLGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAV 411
            VAQRL FDW EA+T     AVA   A  KG ++GL +   +  +   +      T +V+++ +      T+ G RA+ K K      V  +L   +   L     ++R+LAA+ P R  E +  A  LYE FRPAV
Sbjct:   29 VAQRLGFDWEEALTL--GRAVAGLNAYAKGVSIGLFQPTPKGVKERRQRLRPAETFSVDLLHRAVPAIHTDQGVRALEKDKPADPASVQRYLEGKFKDALPEVCEAMRSLAASYPPR--ELAAEAYRLYERFRPAV 160
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9213.17276.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Uncharacterized1.980e-7894.16protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LEH5... [more]
Uncharacterized2.300e-733.09protein n=1 Tax=Acidobacteria bacterium TaxID=1978... [more]
Uncharacterized5.100e-733.82protein n=1 Tax=Bryobacteraceae bacterium TaxID=22... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9213contigE_fasciculatus_S2_contig9213:261..2360 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score244.6
Seed ortholog evalue2.7e-62
Seed eggNOG ortholog2880.D8LEH5
Model size413
Hectar predicted targeting categoryother localisation
Exons3
EggNOG OGs2E2U1@1,2SA0G@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_004660.1
Cds size411
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842571.8189104-CDS-E_fasciculatus_S2_contig9213:260..4461696842571.8189104-CDS-E_fasciculatus_S2_contig9213:260..446Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9213 261..446 +
1696842571.8360488-CDS-E_fasciculatus_S2_contig9213:1696..18441696842571.8360488-CDS-E_fasciculatus_S2_contig9213:1696..1844Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9213 1697..1844 +
1696842571.8461714-CDS-E_fasciculatus_S2_contig9213:2282..23591696842571.8461714-CDS-E_fasciculatus_S2_contig9213:2282..2359Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9213 2283..2359 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9213.17276.1prot_E_fasciculatus_S2_contig9213.17276.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9213 261..2359 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9213.17276.1

>prot_E_fasciculatus_S2_contig9213.17276.1 ID=prot_E_fasciculatus_S2_contig9213.17276.1|Name=mRNA_E_fasciculatus_S2_contig9213.17276.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=137bp
EVAQRLSFDWSEAITSVSSIAVADWLALKKGENLGLLEADEEAERAAMEE
TDDLPTRTVEMMGQDFTLRRTEGGWRAISKGKLVPAKRVHTFLCKAYGVN
LGPARASLRALAAAIPQRHVETSIRAMVLYESFRPAV
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mRNA from alignment at E_fasciculatus_S2_contig9213:261..2360+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9213.17276.1 ID=mRNA_E_fasciculatus_S2_contig9213.17276.1|Name=mRNA_E_fasciculatus_S2_contig9213.17276.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2100bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9213:261..2360+ (Ectocarpus fasciculatus EfasUO2)
GAGGTGGCACAGCGGCTATCGTTTGATTGGAGTGAGGCGATCACATCGGT
TTCTTCCATCGCGGTCGCGGATTGGTTGGCGCTGAAAAAGGGGGAGAATT
TAGGCCTGTTGGAGGCAGATGAAGAAGCAGAGCGAGCAGCGATGGAAGAA
ACCGATGACCTTCCAACCCGCACTGTGGAGATGATGGTAAGCGTACAGTA
TTCAGAACGGGCCTGACCACAAAAGTATGGTACGGTGTTGATCGTTAGCC
TTGGAATGGAAAGAATGATGTCTGGCGTCGCTGCATGATCCCAGGGCTTC
TCCTTCCCGCTGCACCGTGCCTCGCCTGTTGGAAACAGTTAAAGTTGAAG
TAGGGAAGCAGGTGCTCATGGCAATACCGTAGGTGACACAAGATACCAGA
CCCACAGAAGATACCACACCCCTAACGAAATTGCACAGAAAACCACACCT
GTGTGATCATTTTTGGCGTCCTGGGAAAAAGCATCGATTTATCACACGGT
CACAGAAGATACCACACCCCCTAAGTTGAGCCGCAAATATATATGATGGA
ACCCCTTATCACACCGGTGTGGAAGGCCGTGATCACGCACATATCACACG
CCGCAACCGTGCGCTCCGGCTATGGCAACCGACTCTGCGGAGATGAATGA
AGCACGCAACATTGTGCTGAAAGCATCGCGGCTCAGACTCCAGCGGCGGA
ACCACGCCCAAGTGCGTCATTTTTTCTTTTTTCTGTGGCGCCTGAGACTC
CCGCAGCGCTCGGTGTGCCTGCCACCACCCGTGCTGCGCTATTGTGGGTA
TCACCCCCCCCCCCTTTAGCCCTGTAGTTGGTGTCGCGTATTGGCATTTC
ATCTTACGGCTGACATTTCGCACTCTTTTCATCACACCTCGTCGTTATCA
AATCCCTGAAGGGTGAAATCTTGTGGGAGCACTTCATGATATGTGTAAAC
GTCATCAAACCCCCATGATTATCACACCCCTCGATAAAAACACACTGTAG
GTTTGGTGGTGTGGGCGCACTTCTTCCCACGGGTGACATTATCACACCCC
ATGTTTATCGCACCCCCTTGTTACCATACCCCCTGTAGTGGGGTCGTGTG
GGTGGGTGACCTTATCACACACCCCTTGTTATCACACCCCTTGCGGGGTG
GAATCCTCTGAGTGCAGTTTATCACACGTGTGACACAAGATATCACACCC
CCTACAGAGTACCACACCCGTGTGATAACTTTTGGACCTTCAAAAATGTT
ATCACGCGGGTGTGGTATCTTGTGTCACCTACGATATCTCCCGAAAGCAA
CAATACAGCAGTCTATCCCACGGAGGCCAATGAACATGCCAGTCAGCTCC
AGCCCAACCGACGAACTGTGTGTTTTGTCCGCGTTCCTCACCATGAAGAT
TATTGTTTGATGTTTGGAATGTATATTATCGAAAAGGGACAAGACTTTAC
GCTTCGCCGGACGGAGGGTGGGTGGCGTGCCATCAGCAAAGGCAAGCTTG
TGCCAGCGAAAAGGGTGCACACTTTCCTCTGCAAGGCCTATGGAGTCAAC
TTGGGACCCGCACGTGCGTCCCTTCGGGCTCTAGGTAAGCCATGAGCTTC
TCTTGCGTTTCTATGTTTAGTTGTCATCTTCCAACTTGTCTGTACAATTT
TTACCGTATCGTCTAAGCTCACTAAGCTTTGCCGCAGTTTGTATCTTGTG
CCAACTCGGATGGTCTCTGGAAATCGCACGCCTGTCGTTGTCACACTCGG
CACTGTCGTCTGCAAGCGGGCGTGTTGCTGTTGTAGACTATCCTCGGACG
GTAAAAGTCTTCCCAGGTACGGCCTTCCGTGTTGTTTTTCCTTTTTCGTT
GGGGTACCTTACCCCCATCTCTTGTCGCTTCTATCATTTTCCCCGACAGT
TGACATCGTGACCTACAGTCAATAGCGTTGGCGGCACTTGACCGTAGCGC
CAATTTTTATGTTAAATAGATAGCCCGCACCTCCTTACGGCTCCTTTCCG
TGTTCATCCCCAATGGCCGCAGCGGCGGCGATACCTCAGCGGCACGTTGA
GACTTCGATACGCGCCATGGTCCTCTACGAATCGTTTCGGCCCGCGGTCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9213:261..2360+

>mRNA_E_fasciculatus_S2_contig9213.17276.1 ID=mRNA_E_fasciculatus_S2_contig9213.17276.1|Name=mRNA_E_fasciculatus_S2_contig9213.17276.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=411bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9213:261..2360+ (Ectocarpus fasciculatus EfasUO2)
GAGGTGGCACAGCGGCTATCGTTTGATTGGAGTGAGGCGATCACATCGGT
TTCTTCCATCGCGGTCGCGGATTGGTTGGCGCTGAAAAAGGGGGAGAATT
TAGGCCTGTTGGAGGCAGATGAAGAAGCAGAGCGAGCAGCGATGGAAGAA
ACCGATGACCTTCCAACCCGCACTGTGGAGATGATGGGACAAGACTTTAC
GCTTCGCCGGACGGAGGGTGGGTGGCGTGCCATCAGCAAAGGCAAGCTTG
TGCCAGCGAAAAGGGTGCACACTTTCCTCTGCAAGGCCTATGGAGTCAAC
TTGGGACCCGCACGTGCGTCCCTTCGGGCTCTAGCGGCGGCGATACCTCA
GCGGCACGTTGAGACTTCGATACGCGCCATGGTCCTCTACGAATCGTTTC
GGCCCGCGGTC
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