mRNA_E_fasciculatus_S2_contig9208.17270.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9208.17270.1
Unique NamemRNA_E_fasciculatus_S2_contig9208.17270.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9208.17270.1 vs.
Match: SUMO (deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FP60_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 8.920e-10
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   37 FQEAYRSVERWSGGQDIFTKKFVFIPIAMTMHWSLTCL 150
            F  AY SV+RW GG +IFTKKFV +P+   +HWSL+CL
Sbjct:   16 FDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCL 53
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9208.17270.1 vs.
Match: SUMO (deconjugating cysteine peptidase Ulp2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI86_ECTSI)

HSP 1 Score: 57.4 bits (137), Expect = 1.080e-9
Identity = 23/38 (60.53%), Postives = 29/38 (76.32%), Query Frame = 1 
Query:   37 FQEAYRSVERWSGGQDIFTKKFVFIPIAMTMHWSLTCL 150
            F  AY SV+RW GG +IFTKKFV +P+   +HWSL+CL
Sbjct:   16 FDAAYSSVQRWYGGVNIFTKKFVLVPVVEDLHWSLSCL 53
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9208.17270.1 vs.
Match: uncharacterized (protein n=1 Tax=Lentinula edodes TaxID=5353 RepID=UPI001E8DE3BA)

HSP 1 Score: 47.4 bits (111), Expect = 9.230e-5
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:   10 FYCVNRTRYFQEAYRSVERWSGGQDIFTKKFVFIPIAMTMHWSL 141
            FY     +  +E Y+SV RW+   DIF+KKFV +PI   MHW L
Sbjct:  612 FYKKLNKKSIEEGYQSVRRWTSRFDIFSKKFVIVPINENMHWYL 655
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9208.17270.1 vs.
Match: Sumo (deconjugating cysteine peptidase ulp2 n=2 Tax=Lentinula edodes TaxID=5353 RepID=A0A1Q3EH68_LENED)

HSP 1 Score: 47.4 bits (111), Expect = 9.230e-5
Identity = 21/44 (47.73%), Postives = 27/44 (61.36%), Query Frame = 1 
Query:   10 FYCVNRTRYFQEAYRSVERWSGGQDIFTKKFVFIPIAMTMHWSL 141
            FY     +  +E Y+SV RW+   DIF+KKFV +PI   MHW L
Sbjct:  665 FYKKLNKKSIEEGYQSVRRWTSRFDIFSKKFVIVPINENMHWYL 708
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9208.17270.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
SUMO8.920e-1060.53deconjugating cysteine peptidase Ulp2 n=1 Tax=Ecto... [more]
SUMO1.080e-960.53deconjugating cysteine peptidase Ulp2 n=1 Tax=Ecto... [more]
uncharacterized9.230e-547.73protein n=1 Tax=Lentinula edodes TaxID=5353 RepID=... [more]
Sumo9.230e-547.73deconjugating cysteine peptidase ulp2 n=2 Tax=Lent... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9208contigE_fasciculatus_S2_contig9208:5503..5652 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size150
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842571.2430763-CDS-E_fasciculatus_S2_contig9208:5502..56521696842571.2430763-CDS-E_fasciculatus_S2_contig9208:5502..5652Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9208 5503..5652 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9208.17270.1prot_E_fasciculatus_S2_contig9208.17270.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9208 5503..5652 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9208.17270.1

>prot_E_fasciculatus_S2_contig9208.17270.1 ID=prot_E_fasciculatus_S2_contig9208.17270.1|Name=mRNA_E_fasciculatus_S2_contig9208.17270.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=50bp
SLIFYCVNRTRYFQEAYRSVERWSGGQDIFTKKFVFIPIAMTMHWSLTCL
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mRNA from alignment at E_fasciculatus_S2_contig9208:5503..5652+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9208.17270.1 ID=mRNA_E_fasciculatus_S2_contig9208.17270.1|Name=mRNA_E_fasciculatus_S2_contig9208.17270.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=150bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9208:5503..5652+ (Ectocarpus fasciculatus EfasUO2)
TCACTCATTTTTTACTGCGTAAACCGAACACGCTATTTTCAGGAGGCGTA
CCGCAGTGTGGAGCGCTGGTCCGGGGGACAGGATATCTTCACGAAGAAAT
TCGTCTTCATACCGATCGCAATGACTATGCACTGGAGCCTGACATGCCTC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9208:5503..5652+

>mRNA_E_fasciculatus_S2_contig9208.17270.1 ID=mRNA_E_fasciculatus_S2_contig9208.17270.1|Name=mRNA_E_fasciculatus_S2_contig9208.17270.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=150bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9208:5503..5652+ (Ectocarpus fasciculatus EfasUO2)
TCACTCATTTTTTACTGCGTAAACCGAACACGCTATTTTCAGGAGGCGTA
CCGCAGTGTGGAGCGCTGGTCCGGGGGACAGGATATCTTCACGAAGAAAT
TCGTCTTCATACCGATCGCAATGACTATGCACTGGAGCCTGACATGCCTC
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