mRNA_E_fasciculatus_S2_contig9195.17250.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9195.17250.1
Unique NamemRNA_E_fasciculatus_S2_contig9195.17250.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9195.17250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KZ06_9PHAE)

HSP 1 Score: 571 bits (1471), Expect = 4.290e-196
Identity = 378/532 (71.05%), Postives = 404/532 (75.94%), Query Frame = 1 
Query:    1 PVLRREGQQERNPIGASSTDEARRVTFAIDEDAGQARSLQSSRGSADSSSRDCDQRAVAAAITGTTIASSRPANARPGNDNGNSNNSGGGGRLANVAATAAVSGAAPDSNALGRGVALPAMAATQAALSVSPVNRPGARQRKEELSTRCRRVDGAGGGGRGRENSGTGGRRASGESARGAAGLQRGPPLGVRENNAAASDAGPLWRVAFPARRGGGGEGGGEGPRGTTGERGRKSTTGGRRQGKGGTGGTTSEQVDDRVRSSSERWTALLQDGGDEVQWMTQGGDPTSPGVGGSRRWSSASTNLDSFRGGDRVGTRSNTRTT------------SQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQRGRMARRGARAPSPSAGEDVSPGRARGGKRARRTVDGRDSGDREVGAGSCDDGQGLFEGSSGDEGCTYFDNEDPAAGGAQDDGRHEDNDPNGAPQKKELLRVRGLCRMQGSVLALVEWSIVDVDGAASTEMSFVLSSTLKAEWPRQYIDYLEAKMVFDEEEDGGA 1560
            PVLR+EGQ +R PIGASS +EARRVTFA+D++AGQAR LQS RGS DSSSRDCDQRAVAAA                                                               QAALSVSPVNRPGARQR+ ELSTR RRVD AGGGG GRE+SGTG RRA+G SARGAAG QRGPPL VRENNAA S AGPLWR AFPAR GGGG G  EGPRGTTGE G K TTGGRRQG GGTGG TSEQVDDRVR+SSERWT L QDGGDEVQWM+QGGDPT+ GV GSRRW SASTNLDSFRGG R GT +NT+              S XXXXXXXXXXXXXXXXXXXXXXXXXXXXX QRG++ARRG RAPSPSAGED+SPGRARGGKRA+R  +GRD GDR+   G  DDGQGLFEGSS DEGCTYF N+DPAAGGAQDD RH+DNDP GAPQKK LLRVRGLCRMQGSVLALVEWS+VDVDGAASTE+SFVLSSTLKAEWPRQYIDYLEAKMVF+EEE+ GA
Sbjct:  198 PVLRQEGQNDRTPIGASSANEARRVTFAVDKEAGQARRLQSGRGSGDSSSRDCDQRAVAAA---------------------------------------------------------------QAALSVSPVNRPGARQREVELSTRLRRVDDAGGGG-GREDSGTGCRRAAGGSARGAAGRQRGPPLSVRENNAAVSGAGPLWRAAFPARGGGGGAG--EGPRGTTGEWGSKPTTGGRRQGNGGTGGGTSEQVDDRVRNSSERWTTLPQDGGDEVQWMSQGGDPTTAGVDGSRRWPSASTNLDSFRGGGRGGTGANTKXXXXXAEEEGNDVGSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGQIARRGTRAPSPSAGEDMSPGRARGGKRAKRAAEGRDEGDRD---GGTDDGQGLFEGSS-DEGCTYFGNDDPAAGGAQDDRRHKDNDPKGAPQKK-LLRVRGLCRMQGSVLALVEWSMVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEEENDGA 658
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BLAST of mRNA_E_fasciculatus_S2_contig9195.17250.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZK8_ECTSI)

HSP 1 Score: 554 bits (1428), Expect = 1.160e-189
Identity = 385/530 (72.64%), Postives = 404/530 (76.23%), Query Frame = 1 
Query:    1 PVLRREGQQERNPIGASSTDEARRVTFAIDEDAGQARSLQSSRGSADSSSRDCDQRAVAAA------ITGTTIASSRPANARPGNDNGNSNNSGGGG----RLANVAATAAVSGAAPDSNALGRGVALPAMAATQAALSVSPVNRPGARQRKEELSTRCRRVDGAGGGGRGRENSGTGGRRASGESARGAAGLQRGPPLGVRENNAAASDAGPLWRVAFPARRGGGGEGGGEGPRGTTGERGRKSTTGGRRQGKGGTGGTTSEQVDDRVRSSSERWTALLQDGGDEVQWMTQGGDPTSPGVGGSRRWSSASTNLDSFRGGDRVGTRSNTRTTSQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDQRGRMARRGARAPSPSAGEDVSPGRARGGKRARRTVDGRDSGDREVGAGSCDDGQGLFEGSSGDEGCTYFDNEDPAAGGAQDDGRHEDNDPNGAPQKKELLRVRGLCRMQGSVLALVEWSIVDVDGAASTEMSFVLSSTLKAEWPRQYIDYLEAKMVFDEEEDGGA 1560
            PVLRREGQQ+RN IGASSTDE RRVTFA+DE+A QARS QS RGS DSSSRDCDQRA          ITG TI SSR ANARPGND               RLAN AATA VSGA P+SNALGR VALPA+AA QAAL VSPVNRPGARQR+ ELSTR                           SARGAAG QRGPPLGVRENNAA S AGPLWR AFPAR GGG   G EGPRGTTGER         RQGKGGT G TSEQVDDR R+SSERWT L QDGGDEVQWM+QGGDPT+ GV GSRRW SASTNLDSFRGG R G          XXXXXXXXXXXXXXXXXXXXXXXXXXXXX QRG++ARR AR PSPSAGEDVSPGRARG KRA+RTV+GRD GDR    G  DDGQGLFEG SGDEGCTYF+ EDPA GGAQDDGR EDN P G PQK ELLRVRGLCRMQGSVLALVEWS+VDVDGAASTE+SFVLSSTLKAEWPRQYIDYLEAKMVF+EE++ GA
Sbjct:  150 PVLRREGQQDRNWIGASSTDEVRRVTFAVDEEAEQARSRQSGRGSGDSSSRDCDQRAXXXXXXXXXXITGPTIPSSRSANARPGNDXXXXXXXXXXXXXXXRLANAAATAHVSGATPNSNALGRRVALPAVAAAQAALPVSPVNRPGARQREVELSTRRXXXXXX----XXXXXXXXXXXXXXXXSARGAAGRQRGPPLGVRENNAAVSGAGPLWREAFPARGGGGX--GDEGPRGTTGER---------RQGKGGTRGGTSEQVDDRARNSSERWTTLPQDGGDEVQWMSQGGDPTTAGVDGSRRWPSASTNLDSFRGGGRGGKXX------XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQRGQIARRRAREPSPSAGEDVSPGRARGAKRAKRTVEGRDDGDR---GGGTDDGQGLFEG-SGDEGCTYFEYEDPATGGAQDDGRPEDNGPKGGPQK-ELLRVRGLCRMQGSVLALVEWSVVDVDGAASTELSFVLSSTLKAEWPRQYIDYLEAKMVFEEEKNDGA 653
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9195.17250.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized4.290e-19671.05protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.160e-18972.64protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9195contigE_fasciculatus_S2_contig9195:2420..5045 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start0
Model size1564
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-01_010060.1
Cds size1563
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842569.2779205-CDS-E_fasciculatus_S2_contig9195:2419..25641696842569.2779205-CDS-E_fasciculatus_S2_contig9195:2419..2564Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9195 2420..2564 -
1696842569.296261-CDS-E_fasciculatus_S2_contig9195:2935..30961696842569.296261-CDS-E_fasciculatus_S2_contig9195:2935..3096Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9195 2936..3096 -
1696842569.3088012-CDS-E_fasciculatus_S2_contig9195:3788..50451696842569.3088012-CDS-E_fasciculatus_S2_contig9195:3788..5045Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9195 3789..5045 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9195.17250.1prot_E_fasciculatus_S2_contig9195.17250.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9195 2420..5045 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9195.17250.1

>prot_E_fasciculatus_S2_contig9195.17250.1 ID=prot_E_fasciculatus_S2_contig9195.17250.1|Name=mRNA_E_fasciculatus_S2_contig9195.17250.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=521bp
PVLRREGQQERNPIGASSTDEARRVTFAIDEDAGQARSLQSSRGSADSSS
RDCDQRAVAAAITGTTIASSRPANARPGNDNGNSNNSGGGGRLANVAATA
AVSGAAPDSNALGRGVALPAMAATQAALSVSPVNRPGARQRKEELSTRCR
RVDGAGGGGRGRENSGTGGRRASGESARGAAGLQRGPPLGVRENNAAASD
AGPLWRVAFPARRGGGGEGGGEGPRGTTGERGRKSTTGGRRQGKGGTGGT
TSEQVDDRVRSSSERWTALLQDGGDEVQWMTQGGDPTSPGVGGSRRWSSA
STNLDSFRGGDRVGTRSNTRTTSQAEEEEQEEGDVGSGGNGSGSGGGSGS
GGGDQRGRMARRGARAPSPSAGEDVSPGRARGGKRARRTVDGRDSGDREV
GAGSCDDGQGLFEGSSGDEGCTYFDNEDPAAGGAQDDGRHEDNDPNGAPQ
KKELLRVRGLCRMQGSVLALVEWSIVDVDGAASTEMSFVLSSTLKAEWPR
QYIDYLEAKMVFDEEEDGGA*
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mRNA from alignment at E_fasciculatus_S2_contig9195:2420..5045-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9195.17250.1 ID=mRNA_E_fasciculatus_S2_contig9195.17250.1|Name=mRNA_E_fasciculatus_S2_contig9195.17250.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2626bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9195:2420..5045- (Ectocarpus fasciculatus EfasUO2)
CCGGTGCTTCGGAGGGAGGGGCAACAAGAGCGCAACCCAATAGGCGCGTC
CTCGACCGACGAGGCGCGGCGCGTCACCTTCGCCATCGATGAGGACGCGG
GGCAGGCTCGCAGTCTGCAGAGCAGCAGGGGCTCCGCTGATTCCTCCTCG
AGGGACTGTGACCAGCGAGCTGTAGCAGCCGCCATCACGGGCACGACCAT
CGCCTCGTCCCGTCCAGCCAACGCTCGTCCGGGCAACGACAACGGCAACA
GCAACAACAGCGGCGGCGGCGGAAGACTCGCGAATGTCGCGGCAACCGCC
GCTGTCTCAGGTGCCGCTCCCGATAGCAACGCTCTCGGGCGAGGAGTAGC
CCTTCCCGCGATGGCTGCCACGCAGGCAGCACTCTCAGTATCACCGGTGA
ACCGACCAGGGGCGCGTCAACGAAAAGAAGAGTTGTCCACAAGGTGTAGG
CGTGTCGATGGTGCCGGCGGGGGCGGGCGGGGGCGGGAGAACAGCGGCAC
CGGTGGTCGTCGCGCCTCCGGCGAGAGCGCAAGAGGAGCGGCCGGCCTGC
AGCGCGGCCCTCCCTTGGGCGTGCGAGAGAACAACGCGGCTGCTTCTGAT
GCGGGGCCTCTTTGGCGAGTGGCATTTCCTGCACGAAGGGGAGGAGGAGG
AGAAGGTGGAGGCGAAGGACCACGAGGGACGACGGGCGAGCGGGGCAGGA
AGTCTACGACTGGGGGGCGGCGGCAGGGGAAGGGCGGAACCGGGGGGACA
ACATCGGAACAGGTCGATGACAGGGTCCGCAGCAGCAGCGAACGGTGGAC
GGCGCTGCTGCAGGACGGAGGCGACGAGGTCCAGTGGATGACCCAGGGGG
GCGATCCCACTTCGCCGGGGGTTGGCGGGAGCCGCCGGTGGTCGTCAGCT
TCCACCAACCTGGACAGTTTCCGCGGTGGTGACCGTGTCGGCACGAGGTC
CAACACGCGGACAACGTCGCAAGCAGAGGAGGAGGAGCAGGAGGAGGGAG
ATGTCGGCAGCGGCGGCAACGGCAGCGGCAGCGGCGGTGGCAGCGGCAGC
GGCGGTGGCGACCAGCGTGGGCGGATGGCGCGCCGAGGAGCCCGAGCGCC
TTCGCCCTCCGCCGGCGAGGACGTGTCGCCGGGACGCGCGAGGGGAGGAA
AGAGGGCGAGACGAACGGTGGATGGCAGAGACAGTGGTGACCGTGAAGTC
GGCGCCGGAAGTTGCGACGACGGGCAAGGGTTGTTCGAGGGTTCTTCTGG
TGACGAGGTTTGTGTGGGAAAAGCTCGTATGGTCGGTGTAATTGATGTTT
CTGGGGCAGTGCACGTGGTGGGGAGCGGTGGAGACCGACTGGGGCGGCTT
GGCCGAAGGCTGGAGCGTTGATATCGCGCTGGCAGTGTTGCGTGTTTGTT
GCGTTGTCCCTCGCCCTCTCCAGGTCGGAGCGCAGGGGGGTGGCGCACTT
ACTGACATATCTTCACACATCTTACCGTTTAAATCGCATCCTTTCGATCG
ACAGGCGAGAAACGCCGACTGTCCTTCAAGTTTCTAATCAAGACATCCCA
CACACGTGGTTGCTTCCAACTTTTACGCGAACAATTTCTTGATTTTCATT
TCTCGTTGCTGGGTGGTAATCCTCTTCTCGCTGTCATTGAACCGTGCTTT
TTCGCCGCGTCATCTTTCTCCTCTTTCTAAAATTGCGGGCGATATTACGT
ACTTCGTGCCAGGGATTGTCACAGCAATTGACAACTCGAGGGTACGGGTA
CACCGTTGCACACTAACGGTCTTCCGTACCCTGCCGCGCACAACCACTGT
ACTTCCTTAGACGGTCGCGCTTCAAGGCATTCATTTAACTGTCTCATCCC
TGAGAGCAAGAAAACAACCAAGGACGCCCCCCCCCCCTCCCATCTCTTGC
CTCCCGAACGTTCACAACGGCCGATGCTCGTTTCCTTGCGGTCAAGCAGG
GATGCACGTACTTCGACAACGAAGATCCCGCCGCGGGAGGAGCACAAGAC
GACGGGCGGCACGAAGACAACGACCCGAACGGGGCGCCGCAGAAGAAGGA
GTTGCTCCGGGTTCGCGGGCTCTGCCGCATGCAGGGCAGTGTGCTGGCCC
TGGTAGAATGGTGAGAACACCTACGGTAGAAATAGTGACGAGAGTGCGCT
CAGTGAACCCCTTCATGATCCGCTGCCGGCCGGCCACGCGGCCGCTCCTG
GACCCCCATCGGTAAAAAATCCTGATGGAAGTGTAAACCCTTCCGTCTAA
AATTTGCGGCGTTTGTCTTTCCATGCCCACCCACCCCCCAAGAAAATTGC
TCATTTATCCTGGACTCCCATGTGTGGATAGGGATGGATTCGTTGTGCTG
TGGTAAAAAAATACGTGCGCACACACCCACCGCTACAAGACTGGCATTTT
TTCATTGGTCAGCCGCTTAGCGCGGCCTATGCTATTTAAGACATCGCACA
TGCCTGACCATTCACTAACCGGGTCGCGCAGGAGCATCGTGGACGTCGAC
GGGGCCGCCTCTACCGAGATGAGCTTCGTCCTCTCCTCTACCCTCAAGGC
CGAGTGGCCTCGGCAGTACATCGACTACCTCGAGGCGAAGATGGTGTTCG
ACGAGGAGGAGGACGGCGGAGCGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9195:2420..5045-

>mRNA_E_fasciculatus_S2_contig9195.17250.1 ID=mRNA_E_fasciculatus_S2_contig9195.17250.1|Name=mRNA_E_fasciculatus_S2_contig9195.17250.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1563bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9195:2420..5045- (Ectocarpus fasciculatus EfasUO2)
CCGGTGCTTCGGAGGGAGGGGCAACAAGAGCGCAACCCAATAGGCGCGTC
CTCGACCGACGAGGCGCGGCGCGTCACCTTCGCCATCGATGAGGACGCGG
GGCAGGCTCGCAGTCTGCAGAGCAGCAGGGGCTCCGCTGATTCCTCCTCG
AGGGACTGTGACCAGCGAGCTGTAGCAGCCGCCATCACGGGCACGACCAT
CGCCTCGTCCCGTCCAGCCAACGCTCGTCCGGGCAACGACAACGGCAACA
GCAACAACAGCGGCGGCGGCGGAAGACTCGCGAATGTCGCGGCAACCGCC
GCTGTCTCAGGTGCCGCTCCCGATAGCAACGCTCTCGGGCGAGGAGTAGC
CCTTCCCGCGATGGCTGCCACGCAGGCAGCACTCTCAGTATCACCGGTGA
ACCGACCAGGGGCGCGTCAACGAAAAGAAGAGTTGTCCACAAGGTGTAGG
CGTGTCGATGGTGCCGGCGGGGGCGGGCGGGGGCGGGAGAACAGCGGCAC
CGGTGGTCGTCGCGCCTCCGGCGAGAGCGCAAGAGGAGCGGCCGGCCTGC
AGCGCGGCCCTCCCTTGGGCGTGCGAGAGAACAACGCGGCTGCTTCTGAT
GCGGGGCCTCTTTGGCGAGTGGCATTTCCTGCACGAAGGGGAGGAGGAGG
AGAAGGTGGAGGCGAAGGACCACGAGGGACGACGGGCGAGCGGGGCAGGA
AGTCTACGACTGGGGGGCGGCGGCAGGGGAAGGGCGGAACCGGGGGGACA
ACATCGGAACAGGTCGATGACAGGGTCCGCAGCAGCAGCGAACGGTGGAC
GGCGCTGCTGCAGGACGGAGGCGACGAGGTCCAGTGGATGACCCAGGGGG
GCGATCCCACTTCGCCGGGGGTTGGCGGGAGCCGCCGGTGGTCGTCAGCT
TCCACCAACCTGGACAGTTTCCGCGGTGGTGACCGTGTCGGCACGAGGTC
CAACACGCGGACAACGTCGCAAGCAGAGGAGGAGGAGCAGGAGGAGGGAG
ATGTCGGCAGCGGCGGCAACGGCAGCGGCAGCGGCGGTGGCAGCGGCAGC
GGCGGTGGCGACCAGCGTGGGCGGATGGCGCGCCGAGGAGCCCGAGCGCC
TTCGCCCTCCGCCGGCGAGGACGTGTCGCCGGGACGCGCGAGGGGAGGAA
AGAGGGCGAGACGAACGGTGGATGGCAGAGACAGTGGTGACCGTGAAGTC
GGCGCCGGAAGTTGCGACGACGGGCAAGGGTTGTTCGAGGGTTCTTCTGG
TGACGAGGGATGCACGTACTTCGACAACGAAGATCCCGCCGCGGGAGGAG
CACAAGACGACGGGCGGCACGAAGACAACGACCCGAACGGGGCGCCGCAG
AAGAAGGAGTTGCTCCGGGTTCGCGGGCTCTGCCGCATGCAGGGCAGTGT
GCTGGCCCTGGTAGAATGGAGCATCGTGGACGTCGACGGGGCCGCCTCTA
CCGAGATGAGCTTCGTCCTCTCCTCTACCCTCAAGGCCGAGTGGCCTCGG
CAGTACATCGACTACCTCGAGGCGAAGATGGTGTTCGACGAGGAGGAGGA
CGGCGGAGCGTAG
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