mRNA_E_fasciculatus_S2_contig9190.17248.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9190.17248.1
Unique NamemRNA_E_fasciculatus_S2_contig9190.17248.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9190.17248.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9190contigE_fasciculatus_S2_contig9190:4708..5326 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size247
Hectar predicted targeting categoryother localisation
Exons2
Cds size246
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842569.208127-CDS-E_fasciculatus_S2_contig9190:4707..48551696842569.208127-CDS-E_fasciculatus_S2_contig9190:4707..4855Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9190 4708..4855 +
1696842569.2184186-CDS-E_fasciculatus_S2_contig9190:5227..53251696842569.2184186-CDS-E_fasciculatus_S2_contig9190:5227..5325Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9190 5228..5325 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9190.17248.1prot_E_fasciculatus_S2_contig9190.17248.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9190 4708..5325 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9190.17248.1

>prot_E_fasciculatus_S2_contig9190.17248.1 ID=prot_E_fasciculatus_S2_contig9190.17248.1|Name=mRNA_E_fasciculatus_S2_contig9190.17248.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=82bp
PDDQSWHSDRGDEYVSPNVISGISITKAKHAKVRRHSYAKDTKWDGDLPA
NEGDAPKRDEQPSIEALVGIMYRTGTVERGGP
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mRNA from alignment at E_fasciculatus_S2_contig9190:4708..5326+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9190.17248.1 ID=mRNA_E_fasciculatus_S2_contig9190.17248.1|Name=mRNA_E_fasciculatus_S2_contig9190.17248.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=619bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9190:4708..5326+ (Ectocarpus fasciculatus EfasUO2)
CCCGACGACCAGTCCTGGCATAGCGACAGGGGCGACGAGTATGTTTCTCC
AAACGTCATTTCGGGAATCTCCATCACGAAAGCGAAACATGCTAAAGTTC
GACGCCACTCCTACGCCAAGGATACTAAGTGGGATGGAGATTTACCAGGT
GTCTGCGTTGGGGCTATCGAAATGTCGATCCGTCCGGTTGTATGGCTTGC
AGCCCACAGCAGCGCGATTGCGCATCTTCACACGAAATGAAACACGTAAC
ACACCGTGGTGTTACCCATCGCAACTGCTAGCGTAGAGTGGAACGTAAAG
CGCTCCTAAATCGATCTTCCGGTTATTGCCTGGTGTGGTTTACAGTACCG
TTGGAATAGACGACTCCGTCGTACCCATCACAACACCTGAAGTGCTTCGT
CCATGCAGCTGTTGCCATTTCGCACTGCCTCTCGTCTAGGATGTGCGTGT
ACATACTGCCGGTACTCACGTCGTTCGGTGATGCAATCCCATCGTGCTGT
TCTGCTGGTTCCATGTGCAGCCAACGAAGGAGATGCACCGAAGAGAGATG
AGCAGCCAAGCATCGAAGCCTTAGTTGGAATAATGTACCGCACCGGAACC
GTTGAACGAGGAGGCCCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9190:4708..5326+

>mRNA_E_fasciculatus_S2_contig9190.17248.1 ID=mRNA_E_fasciculatus_S2_contig9190.17248.1|Name=mRNA_E_fasciculatus_S2_contig9190.17248.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=246bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9190:4708..5326+ (Ectocarpus fasciculatus EfasUO2)
CCCGACGACCAGTCCTGGCATAGCGACAGGGGCGACGAGTATGTTTCTCC
AAACGTCATTTCGGGAATCTCCATCACGAAAGCGAAACATGCTAAAGTTC
GACGCCACTCCTACGCCAAGGATACTAAGTGGGATGGAGATTTACCAGCC
AACGAAGGAGATGCACCGAAGAGAGATGAGCAGCCAAGCATCGAAGCCTT
AGTTGGAATAATGTACCGCACCGGAACCGTTGAACGAGGAGGCCCG
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