mRNA_E_fasciculatus_S2_contig9187.17244.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9187.17244.1
Unique NamemRNA_E_fasciculatus_S2_contig9187.17244.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9187.17244.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCG0_ECTSI)

HSP 1 Score: 85.9 bits (211), Expect = 4.280e-17
Identity = 45/75 (60.00%), Postives = 54/75 (72.00%), Query Frame = 1 
Query:  316 LGGDFRQSLQGLGSWMPKLEELRVLDWGYDVFNYEIVSSGDSLLRGIEWPKGLRELTVFDHSSLDGVVLPSNVKV 540
            LG  FRQSLQGLG+WMP LE LR+L+W  D+ N       DSLLR IEWPKGL +LTVF  SSL+ V +P+ V+V
Sbjct:   25 LGHKFRQSLQGLGTWMPNLESLRLLEWYVDLQN-------DSLLRRIEWPKGLLQLTVFKESSLEDVGIPAPVEV 92
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BLAST of mRNA_E_fasciculatus_S2_contig9187.17244.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JZZ4_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 3.730e-15
Identity = 45/80 (56.25%), Postives = 53/80 (66.25%), Query Frame = 1 
Query:  319 GGDFRQSLQGLGSWMPKLEELRVLDWGYDVFNYEIVSSGDSLLRGIEWPKGLRELTVFDHSSLDGVVLPSNVKVYRPKLD 558
            G  FRQSLQGLG WMP L+  R+LD+G            D LLRGIEWPKGLR LTV   S+L+GV +PS ++V RP LD
Sbjct:  607 GHRFRQSLQGLGIWMPHLQVFRLLDYGV---------GSDGLLRGIEWPKGLRHLTVLARSNLEGVEIPSTIQVCRPDLD 677
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BLAST of mRNA_E_fasciculatus_S2_contig9187.17244.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYF0_9PHAE)

HSP 1 Score: 79.3 bits (194), Expect = 1.320e-12
Identity = 45/79 (56.96%), Postives = 51/79 (64.56%), Query Frame = 1 
Query:  316 LGGDFRQSLQGLGSWMPKLEELRVLDWGYDVFNYEIVSSGD--SLLRGIEWPKGLRELTVFDHSSLDGVVLPSNVKVYR 546
            LG  FRQSLQGLG+W+P LE    LD            SGD  SLLRGIEWP GLR+L VF  S LDGV++PS V+V R
Sbjct:  332 LGHKFRQSLQGLGTWIPNLEIFHFLDHSN--------GSGDEDSLLRGIEWPTGLRQLAVFRDSRLDGVIIPSTVEVSR 402
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BLAST of mRNA_E_fasciculatus_S2_contig9187.17244.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2S9_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 1.680e-12
Identity = 40/75 (53.33%), Postives = 51/75 (68.00%), Query Frame = 1 
Query:  316 LGGDFRQSLQGLGSWMPKLEELRVLDWGYDVFNYEIVSSGDSLLRGIEWPKGLRELTVFDHSSLDGVVLPSNVKV 540
            LG DF+QSLQGLG+WMP LE LR+ D+    F        DSLL GI WP GLR+L V++ + +DGV +PS V+V
Sbjct:  309 LGDDFKQSLQGLGTWMPNLEVLRLFDFRDPDFG------NDSLLLGIGWPTGLRQLAVYECTKMDGVTIPSTVEV 377
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9187.17244.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUA5_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 5.870e-11
Identity = 43/76 (56.58%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  316 LGGDFRQSLQGLGSWMPKLEELRVLDWGYDVFNYEIVSSG--DSLLRGIEWPKGLRELTVFDHSSLDGVVLPSNVK 537
            LG +FRQSLQ LG+WMP LE   +L        + I  SG  DS LRGIEWPKGLR+L V   SSL GVV+PS V+
Sbjct:  272 LGQNFRQSLQELGTWMPNLETFHLL--------HHIHDSGTEDSFLRGIEWPKGLRQLAVCRLSSLAGVVIPSTVE 339
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9187.17244.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JRF9_9PHAE)

HSP 1 Score: 71.2 bits (173), Expect = 6.560e-10
Identity = 41/76 (53.95%), Postives = 50/76 (65.79%), Query Frame = 1 
Query:  316 LGGDFRQSLQGLGSWMPKLEELRVLDWGYDVFNYEIVSSGDS-LLRGIEWPKGLRELTVFDHSSLDGVVLPSNVKV 540
            LG  FRQSLQGLG+WMP LE L +L       +Y     GDS  LR IEWPKGLR LT+ + +S+DGV +P  V+V
Sbjct:  350 LGHMFRQSLQGLGTWMPNLEVLHLL-------HYHGSGLGDSNFLREIEWPKGLRHLTLLEGTSIDGVDIPLAVQV 418
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9187.17244.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
Uncharacterized4.280e-1760.00protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized3.730e-1556.25protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.320e-1256.96protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized1.680e-1253.33protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized5.870e-1156.58protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized6.560e-1053.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9187contigE_fasciculatus_S2_contig9187:38..1163 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size1126
Hectar predicted targeting categoryother localisation
Exons1
Cds size204
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.892335-UTR-E_fasciculatus_S2_contig9187:37..3971696842568.892335-UTR-E_fasciculatus_S2_contig9187:37..397Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9187 38..397 +
1696842568.9128764-UTR-E_fasciculatus_S2_contig9187:601..11631696842568.9128764-UTR-E_fasciculatus_S2_contig9187:601..1163Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9187 602..1163 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.9026513-CDS-E_fasciculatus_S2_contig9187:397..6011696842568.9026513-CDS-E_fasciculatus_S2_contig9187:397..601Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9187 398..601 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9187.17244.1prot_E_fasciculatus_S2_contig9187.17244.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9187 398..601 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9187.17244.1

>prot_E_fasciculatus_S2_contig9187.17244.1 ID=prot_E_fasciculatus_S2_contig9187.17244.1|Name=mRNA_E_fasciculatus_S2_contig9187.17244.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=68bp
MPKLEELRVLDWGYDVFNYEIVSSGDSLLRGIEWPKGLRELTVFDHSSLD
GVVLPSNVKVYRPKLDI*
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mRNA from alignment at E_fasciculatus_S2_contig9187:38..1163+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9187.17244.1 ID=mRNA_E_fasciculatus_S2_contig9187.17244.1|Name=mRNA_E_fasciculatus_S2_contig9187.17244.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1126bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9187:38..1163+ (Ectocarpus fasciculatus EfasUO2)
CTGCATCTCGAGTTTGGTTTCGTCTTCGACCAGCCGATCGAGCGAGCCAA
GCTTCCGGGATCGCTGCAGCAGCTCACCTTTGGTTCCGACTTCAACCAGC
CGATCGAGCGAACCAAGTTTCCGGCATCACTGCAGCAGCTCACCTTCAGT
CAGGATTTCAACCAGCCGGTTGACGACGTGAGGTGGCCGGCGTCATTACG
AGAGGTTACGTTTGGATATTGGGACGATTCACAGGACAATCGTATATCGT
TGCTTTCGAACTTCAACCAGCGCATAGGAAGCAGCATTTGGCCTGCATCG
CTTCGGCGGCTCACACTAGGAGGAGACTTCAGGCAGTCACTGCAAGGACT
GGGCAGTTGGATGCCCAAACTCGAAGAATTACGTGTTCTTGACTGGGGGT
ATGACGTTTTTAACTACGAGATCGTTTCAAGTGGCGATAGCCTTCTCCGC
GGAATCGAATGGCCAAAGGGCCTTCGTGAGCTGACCGTGTTCGATCACTC
GAGTTTAGATGGGGTTGTACTTCCTTCAAATGTAAAGGTCTATCGCCCAA
AGTTGGACATTTGACTGTGCAGATTGCAGCAGCTTTCCCCCAGTTTAGTG
TTGTGCGAAGTTCTAGGTGATACGTTCAGCGGAAGATGTGATTTAAGAAA
TTGGCGTGGTACCGGTGGAAGCTGAAGTGCTTGAAATACCTGGTGTCATA
CGAGAGGCTCCATCTCACGTTGAATGTGAAACACATGGATGCGGCTGTTG
CGGGGTAGAGGAGGATTGGCTCTTGGGGGTATGTGTTGGGCGGGGGTCGT
CAATTGGTCTACCGCCTGCTACTCGGTTTTCTTTAGTGCGTGAGGTCGAC
CACACGACCCGGAAGTAACGTACCTGGTACATTGTAGTCGACGTGTTCGT
TGGCAGCATGAGTGAACCATGTTAGGGGCTCCAACCAGAAGTAGGTTGGT
AGTGTTCTGTCTGGGATTGTTGAAGAATTCACCAATTGCAAGTCGGAGTC
TCCACTAAAATACAACACTGTTGGCTTGTGACCACGGAAGGCGTCGGCGT
CAGTTGGACTAGTGCGGACCTTATAAGGTACTGAGCGGAGACTGGATTGG
TCATAATGTGAAGACAAAAGCAACAT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9187:38..1163+

>mRNA_E_fasciculatus_S2_contig9187.17244.1 ID=mRNA_E_fasciculatus_S2_contig9187.17244.1|Name=mRNA_E_fasciculatus_S2_contig9187.17244.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=204bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9187:38..1163+ (Ectocarpus fasciculatus EfasUO2)
ATGCCCAAACTCGAAGAATTACGTGTTCTTGACTGGGGGTATGACGTTTT
TAACTACGAGATCGTTTCAAGTGGCGATAGCCTTCTCCGCGGAATCGAAT
GGCCAAAGGGCCTTCGTGAGCTGACCGTGTTCGATCACTCGAGTTTAGAT
GGGGTTGTACTTCCTTCAAATGTAAAGGTCTATCGCCCAAAGTTGGACAT
TTGA
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