mRNA_E_fasciculatus_S2_contig9185.17243.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9185.17243.1
Unique NamemRNA_E_fasciculatus_S2_contig9185.17243.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9185.17243.1 vs.
Match: Structural (maintenance of chromosomes protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LRP2_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 7.390e-45
Identity = 92/98 (93.88%), Postives = 93/98 (94.90%), Query Frame = 1 
Query:    1 MEGGARSSGASGMSLSGVSGTQGSSTAHFSQAQNASVREDREKALEVDLSKLKKHRGAKDAQGLEEVVSGYRKQMQELQGQINQMTPNMRAVERFGDV 294
            MEGGARSSGASGMSL    GTQGSSTAHFSQAQNASV+EDREKALEVDLSKLKKHRGAKDAQGLEEVVSGYRKQMQELQ QINQMTPNMRAVERFGDV
Sbjct: 1004 MEGGARSSGASGMSLXXXXGTQGSSTAHFSQAQNASVKEDREKALEVDLSKLKKHRGAKDAQGLEEVVSGYRKQMQELQAQINQMTPNMRAVERFGDV 1101
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9185.17243.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Structural7.390e-4593.88maintenance of chromosomes protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9185contigE_fasciculatus_S2_contig9185:2807..4536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score165.2
Seed ortholog evalue1.5e-38
Seed eggNOG ortholog2880.D8LRP2
Preferred namesmc1
Model size296
KEGG koko:K06636
KEGG Pathwayko04110,ko04111,ko04113,ko04114,map04110,map04111,map04113,map04114
Hectar predicted targeting categoryother localisation
GOsGO:0000793,GO:0000819,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0006996,GO:0007049,GO:0007059,GO:0007062,GO:0008150,GO:0008278,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0022402,GO:0032991,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044422,GO:0044424,GO:0044427,GO:0044444,GO:0044446,GO:0044464,GO:0051276,GO:0071840,GO:0098813
Exons3
EggNOG free text desc.sister chromatid cohesion
EggNOG OGsCOG1196@1,KOG0018@2759
Cds size294
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03036
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.8145533-CDS-E_fasciculatus_S2_contig9185:2806..29441696842568.8145533-CDS-E_fasciculatus_S2_contig9185:2806..2944Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9185 2807..2944 +
1696842568.8338456-CDS-E_fasciculatus_S2_contig9185:3940..40721696842568.8338456-CDS-E_fasciculatus_S2_contig9185:3940..4072Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9185 3941..4072 +
1696842568.8509617-CDS-E_fasciculatus_S2_contig9185:4512..45361696842568.8509617-CDS-E_fasciculatus_S2_contig9185:4512..4536Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9185 4513..4536 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9185.17243.1prot_E_fasciculatus_S2_contig9185.17243.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9185 2807..4536 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9185.17243.1

>prot_E_fasciculatus_S2_contig9185.17243.1 ID=prot_E_fasciculatus_S2_contig9185.17243.1|Name=mRNA_E_fasciculatus_S2_contig9185.17243.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=98bp
MEGGARSSGASGMSLSGVSGTQGSSTAHFSQAQNASVREDREKALEVDLS
KLKKHRGAKDAQGLEEVVSGYRKQMQELQGQINQMTPNMRAVERFGDV
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mRNA from alignment at E_fasciculatus_S2_contig9185:2807..4536+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9185.17243.1 ID=mRNA_E_fasciculatus_S2_contig9185.17243.1|Name=mRNA_E_fasciculatus_S2_contig9185.17243.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1730bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9185:2807..4536+ (Ectocarpus fasciculatus EfasUO2)
ATGGAAGGAGGAGCGAGGTCCTCGGGTGCGAGTGGCATGAGCCTGTCCGG
CGTATCAGGCACGCAGGGCTCGTCCACAGCCCACTTCAGTCAGGCACAAA
ACGCCTCCGTGAGGGAAGACAGAGAGAAGGCGCTGGAGGTAGGTAAACCA
CACCATGATGCCAACAGTGGTATGTCATCTGCGAATGCCCCTGGGGGAGT
GCACGAGAAATACGTTTTGCTGCAAAGATGCCGGGCACAGAACGACCGAC
GAGCTGATGTACTTGACTGCCTCGGCTTTGGCGATGTTTGTGCACATGAT
CTGGACCTCAGAGAATATATGCCTAGATCGCGCTGTGTGTGCGTAGATGT
GTTAAACTTTCACAGATCGTTAAGTTCGCCAGATGATAAGCCCTTTGCCG
TATGCAACAAAGGCTAGGGTGCCGAGAATCGAAACCCTGAATTTCCAGAC
ATTTGCTACACCTTTAGAAGTCATTCCACTCAACCATGCACAACGATTGA
TGTGCAGGGTTTTCGACTCGTTCGGGTTACTGATTCTTTTTTGGGAGATG
GGCTAGATGGCGTTTTTTTTGTGTGCGGTACCGAGGTAGAAGGGGTTTGA
GGGATGGTCTGCCGACGCGACCAATGTTCTAGCTACGAAGTTCATTCAGA
AGAGGGATCGCGGTTCAGTCAGAAGAAGGGGTCATGGTTGGTCGTTCGTT
GCATTCAGAAGAGGTGTTTCATTCCTTCCGGATGTTGTCTTGTCTGGAAG
TATACAGCAGGAGATTGGTGATGCAAAACGTGGGAGGTATTCAGCAGGAG
ATTGGTGATGCAAAGCCTGGGAGGTATTCAGCAGGATATTGCGGTGGTGC
GGAGGTGGGGGAGGATGTACATGTGCCCACAACAATGTAATGAGTGCCAG
ATCTTTGAAGTTGTCAGGTTATGAGGACTGATAATCTTGTGCTTGGAGCT
CGATTCATTGAACAAGATTTAGGTGTGTGCTGTCTGTGCTGTCTGTCGTG
GTGGGTCTTTTTGCTTCTTCTCAGTCACCAGTGACCAGTGACAGGAATCT
GTGACAACTAGACGGTTAATCTCTCTCTCTCTCTCTGGCTGCCTCTCTCT
CTGTCGCTGTTTGTTTGTTTGACGATGGCGTAAGGTGGACTTGTCCAAGC
TGAAGAAACACCGTGGAGCGAAGGATGCACAAGGTCTGGAGGAGGTGGTG
TCGGGCTACAGGAAGCAGATGCAGGAGCTGCAGGGCCAGATCAACCAGAT
GACGCCCAACATGAGGGTGAGCTTTTCTTTCCTTTCATTAAGTGCAACCC
AAGTAAATGATGCAGCTCATGCCAGCAGTCTGTATCTACTATAATAGGGG
CTGCCCGAGAATCGCTCTTTGCCTGCCACCCGCTGTGGTGTGCTGTAGAG
GTTGGTATCCCCTCTGCCGGAAAATTTTAAGAGTTAGCGTCGAGTGTTGC
TTAGTTGCAATGACCTGGAAGTTTCATTCCGCGTCATCTTCTTGCCCTTG
GCATCTGCGGCTGAGTTTCAAGAGGTGCCACACTCATTGTGAATAATGCG
TGCTTCCGCCCAGGGTGCACATGGCCGAGGAACAGTGATTCATAGTGTTT
CCAAATTGGTCTGGCTCACAGCAAGCGGCGTTTGAAAACCAAACGCCCAC
AATTCATGAACCATGTTGCCCCCCATTCTGGTCATGCGTGCGGGGGTCTC
TGTCAGGCTGTGGAGAGGTTCGGCGACGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9185:2807..4536+

>mRNA_E_fasciculatus_S2_contig9185.17243.1 ID=mRNA_E_fasciculatus_S2_contig9185.17243.1|Name=mRNA_E_fasciculatus_S2_contig9185.17243.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=294bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9185:2807..4536+ (Ectocarpus fasciculatus EfasUO2)
ATGGAAGGAGGAGCGAGGTCCTCGGGTGCGAGTGGCATGAGCCTGTCCGG
CGTATCAGGCACGCAGGGCTCGTCCACAGCCCACTTCAGTCAGGCACAAA
ACGCCTCCGTGAGGGAAGACAGAGAGAAGGCGCTGGAGGTGGACTTGTCC
AAGCTGAAGAAACACCGTGGAGCGAAGGATGCACAAGGTCTGGAGGAGGT
GGTGTCGGGCTACAGGAAGCAGATGCAGGAGCTGCAGGGCCAGATCAACC
AGATGACGCCCAACATGAGGGCTGTGGAGAGGTTCGGCGACGTG
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