mRNA_E_fasciculatus_S2_contig9177.17241.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9177.17241.1
Unique NamemRNA_E_fasciculatus_S2_contig9177.17241.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: ATP-dependent (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCL4_ECTSI)

HSP 1 Score: 184 bits (467), Expect = 8.040e-52
Identity = 88/107 (82.24%), Postives = 89/107 (83.18%), Query Frame = 1
Query:    1 LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNLPRRLAVFLCDKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLLQ 321
            LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPH                  EDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCL+Q
Sbjct:  452 LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPH------------------EDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLVQ 540          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: Hypothetical (protein (Fragment) n=2 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKI0_9STRA)

HSP 1 Score: 105 bits (263), Expect = 1.830e-25
Identity = 53/107 (49.53%), Postives = 64/107 (59.81%), Query Frame = 1
Query:    1 LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNLPRRLAVFLCDKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLLQ 321
            LN+CPSVFTLEPGEFVHINKGRLHAFRK+ P                     ++P   CVSVAWDW+Y+G S    + EM  +L C + NR+  V SL  VE  +LQ
Sbjct:  181 LNYCPSVFTLEPGEFVHINKGRLHAFRKKIP------------------ASVQEPEQFCVSVAWDWIYQGSSPRALKEEMDQSLECVALNRKQRVASLGHVENSILQ 269          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3Q867_9STRA)

HSP 1 Score: 104 bits (259), Expect = 8.970e-24
Identity = 49/108 (45.37%), Postives = 69/108 (63.89%), Query Frame = 1
Query:    1 LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNLPRRLAVFLCDKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLLQV 324
            LN+ P VF L+PG+F+HINKGRLHAFRK    P +  D +   R          PGS+C S+AWDW+Y G +++G   E++ AL CA   ++ GV SLA  E+C++Q+
Sbjct:  640 LNYYPCVFILKPGQFLHINKGRLHAFRKAGRNPVDPKDCHSDIREECMANGAIKPGSICKSIAWDWMYTGTTEKGIHEEVSYALSCARLAKKHGVQSLAIPESCIIQM 747          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SQY1_9STRA)

HSP 1 Score: 100 bits (250), Expect = 1.460e-22
Identity = 51/104 (49.04%), Postives = 62/104 (59.62%), Query Frame = 1
Query:    7 FCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNLPRRLAVFLCDKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLL 318
            +CPSVFTLEPG++VHINKGRLHAFRK  P P ++                 +P   CVSVAWDW+Y+G S +    E+A  L CA  N +  V SLA  ET LL
Sbjct:  772 YCPSVFTLEPGDYVHINKGRLHAFRKRSPPPGSN-----------------EPEQFCVSVAWDWLYQGSSAKALEDEVAEPLACAEYNHKKRVPSLAHTETALL 858          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A7S1ZIK7_9STRA)

HSP 1 Score: 100 bits (249), Expect = 2.020e-22
Identity = 52/109 (47.71%), Postives = 68/109 (62.39%), Query Frame = 1
Query:    1 LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNLPRRLAVFLCDKEDPGS-VCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLLQV 324
            +N+ PSVF L+PG+ VHINKGRLHAFRK  P      D +   R ++ L +    G  +C+SVAWDW++KGV+ EG   E+A  L CA  NR+    SLA  ET LL +
Sbjct:  834 MNYYPSVFILKPGQHVHINKGRLHAFRKLSPTSLPQTDCHAKLRKSIILDENLGFGEQLCMSVAWDWMFKGVTSEGTNREVASILECARLNRKHMKQSLAIPETSLLHM 942          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Pseudo-nitzschia australis TaxID=44445 RepID=A0A7S4EEL1_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.740e-22
Identity = 52/109 (47.71%), Postives = 66/109 (60.55%), Query Frame = 1
Query:    1 LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNL-PRRLAVFLCDKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLLQV 324
            + +CPS+F LEPG+ VHINKGRLHAFRK        +D +  PR+  V          +CVSVAWDW+Y+GVS  G   E+   L  ++ NRR GV SLA  E  LLQ+
Sbjct:  753 MGYCPSIFILEPGDLVHINKGRLHAFRKMSTSKLPDWDCHAKPRQNLVESKGMVGGEKLCVSVAWDWMYRGVSSAGINREVCSVLEGSTLNRRNGVTSLAIPELALLQM 861          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: Hypothetical (protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3L187_9STRA)

HSP 1 Score: 99.8 bits (247), Expect = 3.780e-22
Identity = 51/108 (47.22%), Postives = 67/108 (62.04%), Query Frame = 1
Query:    1 LNFCPSVFTLEPGEFVHINKGRLHAFRKEDP--LPHNSFDRNLPRRLAVFLCDKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLL 318
            +N+CP+VF L+PG+ +HINKGRLHAFRK +   LP       + + L      K  P  +CVSVA+DW++ G + +G   E+A  L CAS NR  GV SLA  ET LL
Sbjct: 1235 MNYCPAVFILKPGQHIHINKGRLHAFRKMETRVLPATDCHAEMRKSLVTLANLKVSP--LCVSVAFDWMFMGTTSDGINREVAACLECASLNRAKGVKSLAIPETALL 1340          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: Uncharacterized (protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SQD9_THAOC)

HSP 1 Score: 98.2 bits (243), Expect = 6.080e-22
Identity = 47/107 (43.93%), Postives = 68/107 (63.55%), Query Frame = 1
Query:    1 LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNLPRRLAVFLCDKEDPGS-VCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLL 318
            + +CPSVF L+PG+ VHINKGRLHAFRK  P P    D +  +R  +    K+  G  +C S+AWDW++KGV+ EG   E++  + C++ N+   + SLA  +T LL
Sbjct:   56 MGYCPSVFVLKPGQLVHINKGRLHAFRKLAPSPLPPTDCHAVQRQMLMDSKKDGEGEDICFSIAWDWMFKGVTSEGINREVSGLVECSALNQVQKLQSLAVPDTALL 162          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: RanBP2-type (domain-containing protein (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8CCF4_THAPS)

HSP 1 Score: 97.4 bits (241), Expect = 2.400e-21
Identity = 49/104 (47.12%), Postives = 66/104 (63.46%), Query Frame = 1
Query:    7 FCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNLPRRLAVFLCDKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLL 318
            +CPSVF L+PG+ VHINKGRLHAFRK  P     +D +  RR  + L +  +   VC S+AWDW++KGV+ +G   E++  L CA  NR   + SLA  ET L+
Sbjct:  736 YCPSVFVLKPGQTVHINKGRLHAFRKLAPSSLPQYDCHHDRRK-IMLLEIGNDEIVCSSIAWDWMFKGVTSDGINREISSVLECAWLNRENYLQSLAIPETALV 838          
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JQ17_FISSO)

HSP 1 Score: 97.4 bits (241), Expect = 2.440e-21
Identity = 48/110 (43.64%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 LNFCPSVFTLEPGEFVHINKGRLHAFRK--EDPLPHNSFDRNLPRRLAVFLCDKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAPVETCLLQV 324
            +N+CPSVF L PG+ +HINKGRLH FRK   +PL  +     L + L V    + D   +C+S+A+DW++ G S+E    E+  AL+CA   R+ G  SL   ETCLL++
Sbjct: 1400 MNYCPSVFVLRPGQHLHINKGRLHTFRKVNSEPLEEDDCHYELRKDLLVGGISRRD--ELCISIAFDWMFLGHSREAIDEELKTALQCADICRKVGTSSLGIPETCLLKI 1507          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9177.17241.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
ATP-dependent8.040e-5282.24DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
Hypothetical1.830e-2549.53protein (Fragment) n=2 Tax=Dictyocha speculum TaxI... [more]
Hypothetical8.970e-2445.37protein n=1 Tax=Chaetoceros debilis TaxID=122233 R... [more]
Hypothetical1.460e-2249.04protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
Hypothetical2.020e-2247.71protein n=1 Tax=Ditylum brightwellii TaxID=49249 R... [more]
Hypothetical3.740e-2247.71protein n=1 Tax=Pseudo-nitzschia australis TaxID=4... [more]
Hypothetical3.780e-2247.22protein n=1 Tax=Amphora coffeiformis TaxID=265554 ... [more]
Uncharacterized6.080e-2243.93protein n=1 Tax=Thalassiosira oceanica TaxID=15974... [more]
RanBP2-type2.400e-2147.12domain-containing protein (Fragment) n=1 Tax=Thala... [more]
Uncharacterized2.440e-2143.64protein n=1 Tax=Fistulifera solaris TaxID=1519565 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9177contigE_fasciculatus_S2_contig9177:5256..5970 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score184.9
Seed ortholog evalue2e-44
Seed eggNOG ortholog2880.D8LCL4
Model size324
KEGG koko:K15255
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.G-quadruplex DNA unwinding
EggNOG OGsCOG0507@1,KOG0987@2759
EC3.6.4.12
Cds size324
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03029,ko03032
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.685661-CDS-E_fasciculatus_S2_contig9177:5255..54771696842568.685661-CDS-E_fasciculatus_S2_contig9177:5255..5477Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9177 5256..5477 -
1696842568.6978774-CDS-E_fasciculatus_S2_contig9177:5868..59701696842568.6978774-CDS-E_fasciculatus_S2_contig9177:5868..5970Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9177 5869..5970 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9177.17241.1prot_E_fasciculatus_S2_contig9177.17241.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9177 5256..5970 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9177.17241.1

>prot_E_fasciculatus_S2_contig9177.17241.1 ID=prot_E_fasciculatus_S2_contig9177.17241.1|Name=mRNA_E_fasciculatus_S2_contig9177.17241.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=108bp
LNFCPSVFTLEPGEFVHINKGRLHAFRKEDPLPHNSFDRNLPRRLAVFLC
DKEDPGSVCVSVAWDWVYKGVSQEGCRGEMACALRCASDNRRFGVVSLAP
VETCLLQV
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mRNA from alignment at E_fasciculatus_S2_contig9177:5256..5970-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9177.17241.1 ID=mRNA_E_fasciculatus_S2_contig9177.17241.1|Name=mRNA_E_fasciculatus_S2_contig9177.17241.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=715bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9177:5256..5970- (Ectocarpus fasciculatus EfasUO2)
CTGAACTTCTGCCCCAGCGTATTCACGCTCGAGCCGGGGGAGTTCGTCCA TATCAACAAGGGGCGTCTTCACGCCTTCCGGAAGGAGGACCCTCTGCCGC ACGTGAGGGTCGGCTGTCTACTCTAGTAGCCAGCGGTTATTTGGCGTTAA GTATGCATACCGTGTCGGAATTTTAGGACTCAAAGTAGATGATACATTGT CCCCATGCATTGACGAAGCAAATCAATAGTGTTGATCTTATGAGGGGAGA CGGGTTGTTTAGCGGCTTTGATGTAGTATACAACGTTAGGAGCTTTTAGT GTCCGGCAAGACCCGCATTCTATGTCTGGGTGTGATGCCCCCCCACGGCC CCCCTCCAAGAAGAGTTTCGGCCGCACCCCTCAACGCTTTTCGCCTTATA TTTTGGCTGGAGGACCTCGGGTCCGTTTCTGTGTACGTCGCTTCGGACTG GGTGACCCCCACCCCCCCCCCTGCGCGCCCCTGACCCCCCGAGAACAGTT TCGACCGTAACCTTCCCCGTCGTCTTGCCGTATTTTTATGTGACAAGGAG GACCCTGGCTCCGTGTGCGTGTCCGTCGCCTGGGACTGGGTGTACAAGGG GGTCTCGCAAGAGGGGTGCAGGGGGGAGATGGCCTGCGCGCTGCGGTGCG CGAGCGACAACCGGCGGTTTGGGGTGGTTTCCCTTGCTCCCGTCGAAACA TGCCTCCTGCAGGTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9177:5256..5970-

>mRNA_E_fasciculatus_S2_contig9177.17241.1 ID=mRNA_E_fasciculatus_S2_contig9177.17241.1|Name=mRNA_E_fasciculatus_S2_contig9177.17241.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=324bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9177:5256..5970- (Ectocarpus fasciculatus EfasUO2)
CTGAACTTCTGCCCCAGCGTATTCACGCTCGAGCCGGGGGAGTTCGTCCA
TATCAACAAGGGGCGTCTTCACGCCTTCCGGAAGGAGGACCCTCTGCCGC
ACAACAGTTTCGACCGTAACCTTCCCCGTCGTCTTGCCGTATTTTTATGT
GACAAGGAGGACCCTGGCTCCGTGTGCGTGTCCGTCGCCTGGGACTGGGT
GTACAAGGGGGTCTCGCAAGAGGGGTGCAGGGGGGAGATGGCCTGCGCGC
TGCGGTGCGCGAGCGACAACCGGCGGTTTGGGGTGGTTTCCCTTGCTCCC
GTCGAAACATGCCTCCTGCAGGTG
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