mRNA_E_fasciculatus_S2_contig9172.17239.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9172.17239.1
Unique NamemRNA_E_fasciculatus_S2_contig9172.17239.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9172.17239.1 vs.
Match: DOT1 (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7S1_9PHAE)

HSP 1 Score: 349 bits (896), Expect = 1.150e-112
Identity = 244/347 (70.32%), Postives = 253/347 (72.91%), Query Frame = 1 
Query:    4 MRCGWDHEARSRRRAVASLLVFAKELERAGRISKASKGLLKELIVHENVEVMSIGERLAKADSGKHQXXXXXXXXXXXXX-AISLHVLDEQISK----------RASKSHEELFEICPLEQAHLLSQKDTENLADGSDTKSLVYGEIDFWSFYDVMKVAAHGIYTTTTSRCHDGQGQGASDRESPPQPSCRGDREXXXXXXXXXXXXXXXMGGRGDIAEEEMYTQGRVEGGXXXXXXXXXXXXXXGEGEERRWPRRSARVQEAGSELRNVGGDGGSTNAPLHGLGAESAMTVAGSNRGERRDGEGXXXXXXXXXXXXXXXXXXLKFYDLGSGSGKALFAAVLAVDFR 1011
            MRC WDHEA SRRRAVASLLVFAKELERAGRISKASKGLLKELIVHEN+EVMSIGERLA+ DSGK+Q XXXXXXXXXXXX  ISLHVLDEQISK          RASKSHEELFEICPLEQAHLLSQKDTENLADGSDTKSLVYGEIDFWSFYDVMKVAAH IYT    RC+DGQ Q ASD+ESPPQ SCRG RE    XXXXXXXXXXX                     XXXXXXX              W R S RVQ+  +ELRNVG DGGSTN P  GLGAESA+TVAGS+ GERR GE                   LKFYDLGSGSGKALFAAVLAVDFR
Sbjct:    1 MRCDWDHEALSRRRAVASLLVFAKELERAGRISKASKGLLKELIVHENLEVMSIGERLARVDSGKNQHXXXXXXXXXXXXXVISLHVLDEQISKCTRCRVLVERRASKSHEELFEICPLEQAHLLSQKDTENLADGSDTKSLVYGEIDFWSFYDVMKVAAHDIYTEP--RCYDGQRQDASDQESPPQSSCRGGREAEEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEC------------WQRSSGRVQDGRNELRNVGCDGGSTNVPRRGLGAESAVTVAGSSPGERRAGESGGGRG-------------LKFYDLGSGSGKALFAAVLAVDFR 320
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BLAST of mRNA_E_fasciculatus_S2_contig9172.17239.1 vs.
Match: DOT1 (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LP02_ECTSI)

HSP 1 Score: 244 bits (624), Expect = 6.170e-73
Identity = 192/336 (57.14%), Postives = 200/336 (59.52%), Query Frame = 1 
Query:    4 MRCGWDHEARSRRRAVASLLVFAKELERAGRISKASKGLLKELIVHENVEVMSIGERLAKADSGKHQXXXXXXXXXXXXXAISLHVLDEQISKRASKSHEELFEICPLEQAHLLSQKDTENLADGSDTKSLVYGEIDFWSFYDVMKVAAHGIYTTTTSRCHDGQGQGASDRESPPQPSCRGDREXXXXXXXXXXXXXXXMGGRGDIAEEEMYTQGRVEGGXXXXXXXXXXXXXXGEGEERRWPRRSARVQEAGSELRNVGGDGGSTNAPLHGLGAESAMTVAGSNRGERRDGEGXXXXXXXXXXXXXXXXXXLKFYDLGSGSGKALFAAVLAVDFR 1011
            MRC WDHEARSRRRAVASLLVFAKELERAGRISKASKGLLKE                                                  +RASKSHEELFEICPLEQAHLLSQKDTENLADGSDTK                 +AAHGIYT T  RC+DG+ QGASDRESPP+PSCRG  E XXXXXXXXXXXXXX                     XXXXXXXXXXX         RW   S  VQ+  +E RNVG DGGSTNAP HGLGAESAMT AGS+ GERRDGE                   LKFYDLGSGSGKALFAAVLAVDFR
Sbjct:    1 MRCDWDHEARSRRRAVASLLVFAKELERAGRISKASKGLLKE--------------------------------------------------RRASKSHEELFEICPLEQAHLLSQKDTENLADGSDTK-----------------IAAHGIYTET--RCYDGKRQGASDRESPPRPSCRGGSEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---------RWQGSSGCVQDGRNEPRNVGCDGGSTNAPRHGLGAESAMTAAGSSPGERRDGE-------------RGGGGGLKFYDLGSGSGKALFAAVLAVDFR 245
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BLAST of mRNA_E_fasciculatus_S2_contig9172.17239.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3YBN8_HETAK)

HSP 1 Score: 68.9 bits (167), Expect = 1.280e-10
Identity = 46/140 (32.86%), Postives = 71/140 (50.71%), Query Frame = 1 
Query:   49 VASLLVFAKELERAGRISKASKGLLKELIVHENVEVMSIGERLAKADSGKHQXXXXXXXXXXXXXAISLHVLDEQ---ISKRASKSHEELFEICPLEQAHLLSQKDTENLADGSDTKSLVYGEIDFWSFYDVMKVAAHGI 459
            ++ LL  A+ + + G IS+ SK  LK  IV  N +++++   L K                     +   V+DE    I+ R       L+  CPLE+AHLL+ +D +   D    K+LVYGE+DF SFY+V++ AA G+
Sbjct:   14 LSKLLHLAQAMTKTGFISQTSKCFLKNAIVARNEKLLNLAGSLTK-------------------NLVIEDVIDELNGIIAARTKAEWAALYGECPLERAHLLASEDQKEAVDSELVKNLVYGEVDFDSFYEVLRHAAQGL 134
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BLAST of mRNA_E_fasciculatus_S2_contig9172.17239.1 vs.
Match: Histone-lysine (N-methyltransferase, H3 lysine-79 specific n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL46_9STRA)

HSP 1 Score: 71.2 bits (173), Expect = 2.060e-10
Identity = 35/69 (50.72%), Postives = 48/69 (69.57%), Query Frame = 1 
Query:  250 SLHVLDEQISKRASKSHEELFEICPLEQAHLLSQKDTENLADGSDTKSLVYGEIDFWSFYDVMKVAAHG 456
            +L+ L   I  RA +S EE+   C LE+AH+L+  D  ++  G+D KSLVYGEIDF SFY+VM++AA G
Sbjct:   51 ALNALKPLIMGRAKRSFEEVISTCSLERAHMLATNDARSMPAGTDIKSLVYGEIDFVSFYEVMQLAAQG 119
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9172.17239.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
DOT11.150e-11270.32domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
DOT16.170e-7357.14domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Hypothetical1.280e-1032.86protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Histone-lysine2.060e-1050.72N-methyltransferase, H3 lysine-79 specific n=1 Tax... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9172contigE_fasciculatus_S2_contig9172:371..3494 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score248.4
Seed ortholog evalue4.6e-63
Seed eggNOG ortholog2880.D8LP02
Model size1014
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Histone methylation protein DOT1
EggNOG OGs2BR00@1,2S1KF@2759
Ec32 ortholog descriptionDOT1 histone methyltransferase
Ec32 orthologEc-06_007110.1
Cds size1011
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.529471-CDS-E_fasciculatus_S2_contig9172:370..9941696842568.529471-CDS-E_fasciculatus_S2_contig9172:370..994Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9172 371..994 -
1696842568.5494494-CDS-E_fasciculatus_S2_contig9172:1861..19701696842568.5494494-CDS-E_fasciculatus_S2_contig9172:1861..1970Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9172 1862..1970 -
1696842568.5618765-CDS-E_fasciculatus_S2_contig9172:2912..30661696842568.5618765-CDS-E_fasciculatus_S2_contig9172:2912..3066Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9172 2913..3066 -
1696842568.572434-CDS-E_fasciculatus_S2_contig9172:3367..34911696842568.572434-CDS-E_fasciculatus_S2_contig9172:3367..3491Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9172 3368..3491 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.5825305-UTR-E_fasciculatus_S2_contig9172:3491..34941696842568.5825305-UTR-E_fasciculatus_S2_contig9172:3491..3494Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9172 3492..3494 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9172.17239.1prot_E_fasciculatus_S2_contig9172.17239.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9172 371..3491 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9172.17239.1

>prot_E_fasciculatus_S2_contig9172.17239.1 ID=prot_E_fasciculatus_S2_contig9172.17239.1|Name=mRNA_E_fasciculatus_S2_contig9172.17239.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=337bp
MRCGWDHEARSRRRAVASLLVFAKELERAGRISKASKGLLKELIVHENVE
VMSIGERLAKADSGKHQHQQDREEEEQQQQAISLHVLDEQISKRASKSHE
ELFEICPLEQAHLLSQKDTENLADGSDTKSLVYGEIDFWSFYDVMKVAAH
GIYTTTTSRCHDGQGQGASDRESPPQPSCRGDREEEEEEDDDSGEGGEGM
GGRGDIAEEEMYTQGRVEGGGEEEDEEEEEEEEDGEGEERRWPRRSARVQ
EAGSELRNVGGDGGSTNAPLHGLGAESAMTVAGSNRGERRDGEGGGGGGG
GGGGGGGGGGGGLKFYDLGSGSGKALFAAVLAVDFR*
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mRNA from alignment at E_fasciculatus_S2_contig9172:371..3494-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9172.17239.1 ID=mRNA_E_fasciculatus_S2_contig9172.17239.1|Name=mRNA_E_fasciculatus_S2_contig9172.17239.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3124bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9172:371..3494- (Ectocarpus fasciculatus EfasUO2)
AGGATGCGCTGCGGTTGGGATCATGAGGCGCGCTCGAGGCGGAGAGCGGT
GGCTAGTCTTCTCGTCTTCGCCAAGGAGCTGGAGAGGGCGGGGCGGATCT
CGAAAGCGAGCAAGGGCCTCCTCAAAGGTACGGTGCGTTGTTGGGCGACG
AGCAGTCTGCAGCATCGAGCTCACTCTGTGGGCACACCGGAGTGTATCCA
TATCCATCCAGAGATCTTTCTCGTCACGGCGATCCTGTTGCGTGCACCTT
GTCTACGATCCCTTCGTGAGCTCTGATCTCTCCGCGATAGCCGTAGTCAA
CCGGCATGTACAACGTACAACCCCTCGTCTCTCCCGCTCATCAGCATTTC
ATCGCCTAGACTATATTCCCTCCACCACGGTTTGTTTCACCGCATCGCGC
ATGCATGTGTTTTGTGTTGTTTGTGCAGAGCTGATCGTGCACGAGAACGT
AGAGGTCATGTCCATTGGAGAGCGCCTGGCGAAGGCCGACAGCGGGAAGC
ACCAGCACCAGCAGGACCGAGAGGAGGAAGAGCAGCAGCAGCAAGCCATT
TCCCTGCACGTCCTCGACGAGCAGATAAGCAAGTGACAAACAAGAGATTG
ATTAGTTGTATTGTGTGCACCCGGTGTACTGCTGTAGATACCGTAATGTT
TTGTGTGTGTGCATTTCCGTGGGATTCCAAACCGCGTTGTGCGATAGGTA
CACCCGCGTTGGCAGCGTTGGCTGCAGTGTCCTGGTTGGTGTTGGTACAG
CAGCCGTGCACGTGCTCTATCTGCACGTGCTCTATCTGCACGTGCTGCCT
ATCTGCACGTGCTCTCGCAAACACTCCGCATGAAACCACTGGTGTTCGTT
GTGCTTCCTTCGCTCTTCATGATCAGCCTACACTAACTGCTGTAATTTGT
TCTGAACATGCGCACCCGCTGTATCTAGTATCTATTTAGTATTAATTGCT
GTTGGCTCTCTTGCCCACAAGAGAGACACACTCATATGTTGTGTTGTATG
TTGCTCAGACGCTCAGACACCAGTAGAACACAGGTGGGTCCTGTAACGCT
ATGGATTACTCGCGCATTTATACTGGACTGTATCGATCGTGTCTGCATGT
AGTAAAACGCAATGAAACTAAACGTTTTGAACTTCAACAATGATGATAGA
ATGCGGTAGTGTAATAGTATTTGACCCCTTCCTTTGAATCAATCACCTCA
CAGTGCTGTGTGGACCCTCTTGTCCGACCACAGTAGCAGGTTGTTGTCGC
TTTCCGTTGTTCTCTTTCCTTAGTTATTGCTTTCCAAGCCAACTCACAGA
TTCCAAGCACACACGATCCCAGGTAGATCGCACACTGAACAGGAGGGGCG
CACAAGCCTCGGCATAAAGCCCGAATCTTGCATGACGTCACGTCCTATCA
TCCGACGGCGTCGAACAAACATGGTCAAGCACGTTCACAAGTCTACCTCC
AAATACCATAACAGTAGCCCACTACTACAATACATGTACTACGTGCTGCT
GTTACCTTGCGTTCGGCCAGAGAGACGAGCGAGCAAATCGCACGAGGAGC
TTTTCGAGATCTGCCCGTTGGAGCAAGCACACCTCCTTTCTCAGAAGGAC
ACGGAGAACCTGGCAGACGGTTCTGACACCAAGGTGTGTGCTTACCGCCG
ATACTGCATCTATCTACAGTATTATGGAAACACGGAAACACGAGTACATT
TCCTGTTGTGCAGGGGCGTACTCTTATGTTTCGCATGCCTTGGCGGTTAT
AGACCATTCACCACGCGTCTTCGAGGACGGAGCATTACTGCCACAGGGCC
TATCACCGATGGCCAATCGTTTCTTTGTACTTTGCCAAATGTGTCTCAAA
CATGCCTTCCTAATCCATCTGTCCTATCGATATCACAATGATCCTGTTGT
GCAGGGAATACCTAAAGTACTCGTTCTATCTGTGCTGTAATGACGAGGGG
GGGATGATAGTCGTCATCTTCCCTCAAGATTATATGAAGCACACGCCACG
GCGAAATTTTCCGCCCCATCAGTTGTACGAGACAACCCTGCTAGTTTTGG
GCCTCCCCAGATTCCTTTGCAGACGGACAGGGCTAGAAACGAACACACAG
AGAGGAAAGGGACGGCAGAGAGAGAAAGAGAGAGAGAGAGAAAGAAACCA
GAGAAGTCAGACACACGGAAGACAATCGTTATTTGTGAACCCCCCCTCCG
CCCCCCCAGCGGTGATCGGTCCTGTTGGAATAATGATCCGTCCTCTCGAG
GACGCGTGGTCAATGGTCTAACAGCTAAGGCAAAGGCATGCAAAACATAG
AGAGTACGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTCCCCCC
CCTTTGTGTTTGTGGGGGGTGCCTTCCTGGCCTTCTTCCACTTTTTCAAG
GGTTCCGCNNNNNNNNNNGGTCAATAGTCTAACAGCTAAGGCATGCAAAA
CGTGAGAGTACGCGCCCCCCCCCCCCCCGCCTCCCCCTCCCCTTTCTCAG
TCCTTGGTGTATGGCGAGATCGACTTCTGGTCCTTCTACGATGTCATGAA
GGTTGCCGCACACGGCATCTACACCACCACCACAAGCCGCTGCCACGACG
GGCAAGGCCAAGGCGCGAGCGATCGGGAGTCTCCTCCTCAGCCTTCGTGT
CGAGGGGACAGGGAGGAGGAGGAGGAGGAGGACGACGACAGCGGCGAGGG
CGGAGAGGGTATGGGGGGGAGAGGGGACATTGCGGAGGAAGAAATGTACA
CGCAGGGAAGGGTCGAAGGGGGCGGAGAGGAGGAAGACGAAGAGGAGGAG
GAGGAGGAGGAGGACGGGGAGGGGGAGGAGCGGCGATGGCCACGACGCAG
CGCTCGCGTTCAGGAAGCTGGAAGCGAGCTCCGAAACGTAGGCGGCGATG
GCGGCAGCACGAACGCACCACTGCACGGGCTGGGGGCGGAGTCGGCGATG
ACGGTGGCAGGCAGCAATCGTGGCGAGAGACGAGACGGAGAAGGAGGAGG
AGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGT
TGAAGTTCTATGATCTCGGCAGCGGGTCGGGAAAGGCCTTATTCGCCGCC
GTCCTGGCAGTTGACTTTCGGTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9172:371..3494-

>mRNA_E_fasciculatus_S2_contig9172.17239.1 ID=mRNA_E_fasciculatus_S2_contig9172.17239.1|Name=mRNA_E_fasciculatus_S2_contig9172.17239.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1011bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9172:371..3494- (Ectocarpus fasciculatus EfasUO2)
ATGCGCTGCGGTTGGGATCATGAGGCGCGCTCGAGGCGGAGAGCGGTGGC
TAGTCTTCTCGTCTTCGCCAAGGAGCTGGAGAGGGCGGGGCGGATCTCGA
AAGCGAGCAAGGGCCTCCTCAAAGAGCTGATCGTGCACGAGAACGTAGAG
GTCATGTCCATTGGAGAGCGCCTGGCGAAGGCCGACAGCGGGAAGCACCA
GCACCAGCAGGACCGAGAGGAGGAAGAGCAGCAGCAGCAAGCCATTTCCC
TGCACGTCCTCGACGAGCAGATAAGCAAACGAGCGAGCAAATCGCACGAG
GAGCTTTTCGAGATCTGCCCGTTGGAGCAAGCACACCTCCTTTCTCAGAA
GGACACGGAGAACCTGGCAGACGGTTCTGACACCAAGTCCTTGGTGTATG
GCGAGATCGACTTCTGGTCCTTCTACGATGTCATGAAGGTTGCCGCACAC
GGCATCTACACCACCACCACAAGCCGCTGCCACGACGGGCAAGGCCAAGG
CGCGAGCGATCGGGAGTCTCCTCCTCAGCCTTCGTGTCGAGGGGACAGGG
AGGAGGAGGAGGAGGAGGACGACGACAGCGGCGAGGGCGGAGAGGGTATG
GGGGGGAGAGGGGACATTGCGGAGGAAGAAATGTACACGCAGGGAAGGGT
CGAAGGGGGCGGAGAGGAGGAAGACGAAGAGGAGGAGGAGGAGGAGGAGG
ACGGGGAGGGGGAGGAGCGGCGATGGCCACGACGCAGCGCTCGCGTTCAG
GAAGCTGGAAGCGAGCTCCGAAACGTAGGCGGCGATGGCGGCAGCACGAA
CGCACCACTGCACGGGCTGGGGGCGGAGTCGGCGATGACGGTGGCAGGCA
GCAATCGTGGCGAGAGACGAGACGGAGAAGGAGGAGGAGGAGGAGGAGGA
GGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGAGGGTTGAAGTTCTATGA
TCTCGGCAGCGGGTCGGGAAAGGCCTTATTCGCCGCCGTCCTGGCAGTTG
ACTTTCGGTAA
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