mRNA_E_fasciculatus_S2_contig9170.17237.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9170.17237.1
Unique NamemRNA_E_fasciculatus_S2_contig9170.17237.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3C4_ECTSI)

HSP 1 Score: 760 bits (1963), Expect = 1.820e-257
Identity = 481/533 (90.24%), Postives = 490/533 (91.93%), Query Frame = 1 
Query:  109 SEGGFGPEEVALFERRLKDGGEPEELLVKTAREMGERSLKRKAIAAALAGDDEVEVVRAKKIKVTVTVAGGRGGFGEPSYSETKQVEVRNRMKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKARNAAVVNDGWLRQDDEFSDEEIDRFDSGKSNNNXXXXXXXXXXGPNNRKALGFVGEGVTIGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXHQPAFVSAIMFRRRPISDEEARERPALRALSGYRAVTPFSGGTGRRPQTPAFPVGVVGAMVEKARRNDTGEGGXXXXXXXXX--KEEGKVRKVKDVPDELLPLLVEKLHGKADKREDVVNAFVAEHPQCTKKSVHQKVKDMATRERSLHGGTVFVVNPEVIERLGVETRAVELKPSQAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKTTGDKSKIAPLPGQLSLLGFLQTAKVKGATAGDSSPPSRATPKMLFGPNAKDEGDAPS 1701
            SEGGFGPEEV LFE+RLKDGGEPEELLVKTAREMGERSLKRKAIAAALAGDDEVEVVRAKKIKVTVTVAGGRGGFGEPSYSETKQVEVRNRMKLLQFHQDHRP YWGTWSK+S+QVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKARN A V DGWLRQDDEFSDEEIDRFDSGKSNNNXXXXXXXXXX    RKALGFVGEGVTIGAGAXXXXXXXXXXXXXXXXXXXXX       PAFVSAIMFRRRPISDEEAR RPALRALSGYRAVTPFSGG GRRP++PAFPV VV AMVEKARR+DTGEGGXXXXXXXXX  KEEGKVRKVKDVPDELLP+LVEKLHGKADKREDVVNAFVAEHPQCTKKSVHQKVKD+ATRERSLHGGTVFVVNPEVIERLGVET AVELKPSQAE A XXXXXXXXXXXXXXXXXXXXX              GPK  GDKSK AP+PGQLSLLGFLQTAKVKGATAGDSSPPSRATPKMLFGPNAKDEG APS
Sbjct:  734 SEGGFGPEEVVLFEKRLKDGGEPEELLVKTAREMGERSLKRKAIAAALAGDDEVEVVRAKKIKVTVTVAGGRGGFGEPSYSETKQVEVRNRMKLLQFHQDHRPPYWGTWSKSSSQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKARNQAAVVDGWLRQDDEFSDEEIDRFDSGKSNNNXXXXXXXXXXX---RKALGFVGEGVTIGAGAXXXXXXXXXXXXXXXXXXXXX-------PAFVSAIMFRRRPISDEEARARPALRALSGYRAVTPFSGGNGRRPRSPAFPVSVVEAMVEKARRSDTGEGGXXXXXXXXXXGKEEGKVRKVKDVPDELLPMLVEKLHGKADKREDVVNAFVAEHPQCTKKSVHQKVKDVATRERSLHGGTVFVVNPEVIERLGVETSAVELKPSQAEVAAXXXXXXXXXXXXXXXXXXXXXDDGVNTTPGS----GPKAAGDKSKTAPVPGQLSLLGFLQTAKVKGATAGDSSPPSRATPKMLFGPNAKDEGAAPS 1252
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVX8_9PHAE)

HSP 1 Score: 695 bits (1794), Expect = 2.110e-232
Identity = 454/554 (81.95%), Postives = 467/554 (84.30%), Query Frame = 1 
Query:  103 RRSEGGFGPEEVALFERRLKDGGEPEELLVKTAREMGERSLKRKAIAAALAGDDEVEVVRAKKIKVTVTVAGGRGGFGEPSYSETKQVEVRNRMKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKARNAAVVNDGWLRQDDEFSDEEIDRFDSGKSNNNXXXXXXXXXXGPNNRKALGFVGEGVTIGAGAXXXXXXXXXXXXXXXXXXXXXXXXXXHQPAFVSAIMFRRRPISDEEARERPALRALSGYRAVTPFSGGTGRRPQTPAFPVGVVGAMVEKARRNDTGEGGXXXXXXXXXKEEGKVRKVKDVPDELLPLLVEKLHGKADKREDVVNAFVAEHPQCTKKSVHQKVKDMATRERSLHGGTVFVVNPEVIERLGVETRAVELKPSQAEAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGPKTTGDKSKIAPLPGQLSLLGFLQTAKVKGATAGDSSPPSRATPKMLFGPNAKDEGDAPSSAGAGAGAVSSGTETCAGKAA 1764
            RRSEGGFGPEEVALFE+RLKDGGEPEELLVKTAREMGERSLKRKAIAAALAGDD+VEVVRAKKIKV VTVAGGRGGFGEPSYSETKQVEVRNRMKLLQFHQDHRP YWGTWSKNS+QVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKAR+ A V DGWLRQDDEFSDEEIDRFDSGKSN  XXXXXXXXXX     KA GFVGEGVTIGAGAXXXXXXXXXXXXXXXXXXXXXXXXX   PAFVSAIMFRRRPISDEEA ERPAL+ALSGYRAVTPFSGG GRRP++PAFPV VV AM EKAR +DTGE G         KEEGKVRKVKDVPDELLPLLVEKLHGKADKREDVV+AFVAEHPQCTKKSVHQKVKD+ATRERSLHGGTVFVVNPEVIERLGVET AVELKPSQAE A XXXXXXXXXXXXXXXXXXXX                     D   +   PG          +  KG T GD+SPPSR  PKMLFGP AKDEG APS A AGAGAV   TET  GKAA
Sbjct:  737 RRSEGGFGPEEVALFEKRLKDGGEPEELLVKTAREMGERSLKRKAIAAALAGDDKVEVVRAKKIKVNVTVAGGRGGFGEPSYSETKQVEVRNRMKLLQFHQDHRPPYWGTWSKNSSQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKARDQAAVVDGWLRQDDEFSDEEIDRFDSGKSNXXXXXXXXXXXXXXX-XKASGFVGEGVTIGAGAXXXXXXXXXXXXXXXXXXXXXXXXX---PAFVSAIMFRRRPISDEEASERPALQALSGYRAVTPFSGGNGRRPRSPAFPVSVVEAMAEKARGSDTGERGEAGAGSGVLKEEGKVRKVKDVPDELLPLLVEKLHGKADKREDVVSAFVAEHPQCTKKSVHQKVKDVATRERSLHGGTVFVVNPEVIERLGVETSAVELKPSQAEVAAXXXXXXXXXXXXXXXXXXXXV--------------------DDDGVNTTPG----------SGTKGVTPGDNSPPSRTMPKMLFGPKAKDEGAAPS-ASAGAGAVGDDTETSEGKAA 1255
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BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Hypothetical (protein n=2 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FKT5_9STRA)

HSP 1 Score: 106 bits (264), Expect = 5.000e-20
Identity = 62/133 (46.62%), Postives = 85/133 (63.91%), Query Frame = 1 
Query:  280 RAKKIKVTVTVAGGRGGFGEPSYSETKQVEVRNRMKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKARNAAVVNDGWLRQDDEFS--DEEID 672
            +AK  K++V VA     F  P+YSE ++V + +R K L F +D+RP Y+GTWSK S  V+GRRP G+D  G+L+Y+Y SEE+WEEE  GED  +D +   +D++D  A  A     GWL  DD+F   DEE D
Sbjct:  744 KAKWRKLSVAVAVPSSAFCGPAYSEHREVLLHDRTKYLHFWEDYRPPYYGTWSKRSNAVSGRRPFGKD--GSLDYEYASEEEWEEEGPGEDCQADGD---DDSVDEGAEAAGEDFQGWLVDDDDFGLDDEEED 871
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Hypothetical (protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XVB8_9STRA)

HSP 1 Score: 90.9 bits (224), Expect = 4.370e-17
Identity = 51/107 (47.66%), Postives = 67/107 (62.62%), Query Frame = 1 
Query:  337 EPSYSETKQVEVRNRMKLLQFHQDHRPAYWGTWSKNST-QVTGRRPLGRDTKGTLNYDYDSEEDWEE--EAQGEDLLSDEEVEPEDNLDYKARNAAVVNDGWLRQDD 648
            E ++SE K V  R + KLLQF +DHRP YWGTWS +   QV GRRP G   K  L+Y+ DSE +WEE  + +GEDL  D + + E+ +  K ++     DGWL QDD
Sbjct:    4 EATFSEQKVVRFRKKHKLLQFQEDHRPPYWGTWSASGAPQVGGRRPFGHHEK--LDYEVDSEAEWEEPEDEEGEDLSEDGQSDDEEGVS-KGKDCLDYEDGWLAQDD 107
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z793_9STRA)

HSP 1 Score: 94.4 bits (233), Expect = 2.880e-16
Identity = 56/113 (49.56%), Postives = 69/113 (61.06%), Query Frame = 1 
Query:  355 TKQVEVRNRMKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGED--------LLSDEEVEPEDNLDYKARNAAVVNDGWLRQDDEFSDEEI 669
            ++ V +R RMKLLQF  D RP YWGT+SK S  VTGRRPLGRD +  L+YDYDSE  W   ++G+D            +E +P D  DY        NDGW+R DDEFSD E+
Sbjct:  716 SRVVVLRPRMKLLQFAADVRPPYWGTFSKRSAAVTGRRPLGRDER--LDYDYDSEASW---SEGDDQXXXXXXXXXXXDESDPLDEPDY--------NDGWMRYDDEFSDSEL 815
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BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: chromatin (assembly factor 1 subunit A-B-like isoform X1 n=2 Tax=Frankliniella occidentalis TaxID=133901 RepID=A0A6J1T8K0_FRAOC)

HSP 1 Score: 90.9 bits (224), Expect = 3.450e-15
Identity = 53/105 (50.48%), Postives = 69/105 (65.71%), Query Frame = 1 
Query:  355 TKQVEVRNRMKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLL-SDEEVEPEDNLDYKARNAAVVNDGWLRQDDEFSDEE 666
            TK+VEV  R K LQFH++HRPAY GTW K S  VTGRRP G++    L+Y++DS ++WEEE  GE L  SD+E E E   +Y+  N+  V  G+L  D+   DEE
Sbjct:  664 TKKVEVL-RAKFLQFHENHRPAYRGTWRKRSNFVTGRRPFGQEK--ILDYEFDSADEWEEEEPGESLHGSDDEKEKESEDEYEVDNSIFVPHGYLSDDEGDGDEE 765
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BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FKH0_9STRA)

HSP 1 Score: 90.1 bits (222), Expect = 6.040e-15
Identity = 60/140 (42.86%), Postives = 80/140 (57.14%), Query Frame = 1 
Query:  280 RAKKIKVTV--TVAGGRG-GFGEPSYSETKQVEVRNRMKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEE--EAQGEDLLSD------EEVEPEDNLDYKARNAAVVNDGWLRQDDEFSDEE 666
            R KKI V+V  TVA     G+  PSY E + +++ N+ + L FH++HRPAY GTWSK ST VTGR P  +D     NY+ DSE +WEE  +  GED+  D      EE E  D   Y   +   V+D  L  ++E +DEE
Sbjct:  737 RTKKIAVSVYQTVAPQEDDGWNAPSYLEQRTIKIPNKYRFLSFHENHRPAYHGTWSKKSTIVTGRNPFRKDASA-FNYEDDSEGEWEEGDDEMGEDVEDDAKNQEEEEAEDADGKVYDFDDGFCVSDERLLDNEEDADEE 875
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BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Putative (chromatin assembly factor 1 subunit a (Fragment) n=2 Tax=Ixodes ricinus TaxID=34613 RepID=V5H8E2_IXORI)

HSP 1 Score: 87.4 bits (215), Expect = 2.130e-14
Identity = 52/113 (46.02%), Postives = 68/113 (60.18%), Query Frame = 1 
Query:  322 RGGFGEPSYSETKQVEVRNRMKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKARNAAVVNDGWLRQDDEFSD 660
            R  F   +    ++ E R R KLLQF ++ RPAYWGTW K S  V+GRRP G++ +  L+Y+ DSEE+WEEE  GE  LS  E E E   DY+  N   V  G+L +D+E  D
Sbjct:  171 RKAFPRRTLQIPRRQEERPRAKLLQFCENVRPAYWGTWRKKSQAVSGRRPWGKEKE--LDYEVDSEEEWEEEEPGE-SLSGTEDEKEXXDDYEVDNDVFVPHGYLSEDEEKGD 280
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Uncharacterized (protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1314781 RepID=A0A165GF24_EXIGL)

HSP 1 Score: 86.7 bits (213), Expect = 5.530e-14
Identity = 51/118 (43.22%), Postives = 66/118 (55.93%), Query Frame = 1 
Query:  334 GEPSYSETKQVEVRNR----MKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYKARNAAVV-----NDGWLRQDDEFSD 660
            G+   +   Q+++++R    +KLLQFHQD RPAYWGTW+K+S  V  RRP G+DT G  +Y YDSEEDWEEE          E    +N+D  A +          D WL  DDE  D
Sbjct:  415 GDEDATARLQLQLKDRKRFPVKLLQFHQDVRPAYWGTWTKSSAHVRPRRPFGQDT-GVFDYGYDSEEDWEEEP---------EEGAAENIDADAMSXXXXXXXXXTDSWLAPDDEVED 522
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BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Match: Uncharacterized (protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A0L0H9F3_SPIPD)

HSP 1 Score: 85.9 bits (211), Expect = 1.250e-13
Identity = 41/62 (66.13%), Postives = 48/62 (77.42%), Query Frame = 1 
Query:  379 RMKLLQFHQDHRPAYWGTWSKNSTQVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSD 564
            + KLLQFH++ RPAYWGTWSK ST+VTGRRP  +D    L YDYDSE +WEEE  GE+L SD
Sbjct:  527 KWKLLQFHENFRPAYWGTWSKKSTRVTGRRPFAKDID-LLEYDYDSEAEWEEEEPGEELRSD 587
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9170.17237.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized1.820e-25790.24protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.110e-23281.95protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical5.000e-2046.62protein n=2 Tax=Corethron hystrix TaxID=216773 Rep... [more]
Hypothetical4.370e-1747.66protein n=1 Tax=Fibrocapsa japonica TaxID=94617 Re... [more]
Uncharacterized2.880e-1649.56protein n=1 Tax=Tribonema minus TaxID=303371 RepID... [more]
chromatin3.450e-1550.48assembly factor 1 subunit A-B-like isoform X1 n=2 ... [more]
Uncharacterized6.040e-1542.86protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 ... [more]
Putative2.130e-1446.02chromatin assembly factor 1 subunit a (Fragment) n... [more]
Uncharacterized5.530e-1443.22protein n=1 Tax=Exidia glandulosa HHB12029 TaxID=1... [more]
Uncharacterized1.250e-1366.13protein n=2 Tax=Spizellomyces TaxID=4815 RepID=A0A... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9170contigE_fasciculatus_S2_contig9170:47..6189 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score774.2
Seed ortholog evalue4.5e-221
Seed eggNOG ortholog2880.D7G3C4
Preferred nameCHAF1A
Model size1860
KEGG koko:K10750
Hectar predicted targeting categoryother localisation
GOsGO:0000228,GO:0000278,GO:0000724,GO:0000725,GO:0000785,GO:0000790,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006281,GO:0006302,GO:0006310,GO:0006323,GO:0006325,GO:0006333,GO:0006334,GO:0006335,GO:0006338,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007049,GO:0007275,GO:0007346,GO:0007444,GO:0008150,GO:0008152,GO:0008283,GO:0009058,GO:0009059,GO:0009314,GO:0009555,GO:0009628,GO:0009888,GO:0009934,GO:0009987,GO:0010026,GO:0010212,GO:0010332,GO:0010389,GO:0010448,GO:0010449,GO:0010564,GO:0016043,GO:0019904,GO:0022402,GO:0022603,GO:0022607,GO:0022622,GO:0030154,GO:0031497,GO:0031507,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032991,GO:0033186,GO:0033554,GO:0034622,GO:0034641,GO:0034645,GO:0034723,GO:0034728,GO:0035264,GO:0035266,GO:0035295,GO:0040007,GO:0042023,GO:0042393,GO:0042802,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0044770,GO:0044772,GO:0044786,GO:0045787,GO:0046483,GO:0048229,GO:0048364,GO:0048366,GO:0048367,GO:0048507,GO:0048509,GO:0048513,GO:0048518,GO:0048522,GO:0048589,GO:0048731,GO:0048827,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050896,GO:0051082,GO:0051276,GO:0051716,GO:0051726,GO:0060429,GO:0065003,GO:0065004,GO:0065007,GO:0070013,GO:0070087,GO:0070828,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0080186,GO:0090304,GO:0090558,GO:0099402,GO:1901360,GO:1901576,GO:1901987,GO:1901990,GO:1902749,GO:1903047
Exons10
EggNOG free text desc.nucleosome assembly
EggNOG OGsKOG4364@1,KOG4364@2759
Cds size1860
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9170.17237.1prot_E_fasciculatus_S2_contig9170.17237.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9170 47..6189 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.270257-CDS-E_fasciculatus_S2_contig9170:46..2981696842568.270257-CDS-E_fasciculatus_S2_contig9170:46..298Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 47..298 -
1696842568.2837045-CDS-E_fasciculatus_S2_contig9170:792..8731696842568.2837045-CDS-E_fasciculatus_S2_contig9170:792..873Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 793..873 -
1696842568.294351-CDS-E_fasciculatus_S2_contig9170:1351..16121696842568.294351-CDS-E_fasciculatus_S2_contig9170:1351..1612Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 1352..1612 -
1696842568.3048189-CDS-E_fasciculatus_S2_contig9170:2418..25351696842568.3048189-CDS-E_fasciculatus_S2_contig9170:2418..2535Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 2419..2535 -
1696842568.3156297-CDS-E_fasciculatus_S2_contig9170:2785..33101696842568.3156297-CDS-E_fasciculatus_S2_contig9170:2785..3310Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 2786..3310 -
1696842568.3289213-CDS-E_fasciculatus_S2_contig9170:3967..40711696842568.3289213-CDS-E_fasciculatus_S2_contig9170:3967..4071Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 3968..4071 -
1696842568.3390045-CDS-E_fasciculatus_S2_contig9170:4382..45391696842568.3390045-CDS-E_fasciculatus_S2_contig9170:4382..4539Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 4383..4539 -
1696842568.3505406-CDS-E_fasciculatus_S2_contig9170:4857..49531696842568.3505406-CDS-E_fasciculatus_S2_contig9170:4857..4953Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 4858..4953 -
1696842568.3596382-CDS-E_fasciculatus_S2_contig9170:5500..55621696842568.3596382-CDS-E_fasciculatus_S2_contig9170:5500..5562Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 5501..5562 -
1696842568.3691018-CDS-E_fasciculatus_S2_contig9170:5984..61891696842568.3691018-CDS-E_fasciculatus_S2_contig9170:5984..6189Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9170 5985..6189 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9170.17237.1

>prot_E_fasciculatus_S2_contig9170.17237.1 ID=prot_E_fasciculatus_S2_contig9170.17237.1|Name=mRNA_E_fasciculatus_S2_contig9170.17237.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=620bp
GGGGGGGGGGGGGGGVGGGGGGGGGGDLGGGVVVRRSEGGFGPEEVALFE
RRLKDGGEPEELLVKTAREMGERSLKRKAIAAALAGDDEVEVVRAKKIKV
TVTVAGGRGGFGEPSYSETKQVEVRNRMKLLQFHQDHRPAYWGTWSKNST
QVTGRRPLGRDTKGTLNYDYDSEEDWEEEAQGEDLLSDEEVEPEDNLDYK
ARNAAVVNDGWLRQDDEFSDEEIDRFDSGKSNNNANNNTTNTTTGPNNRK
ALGFVGEGVTIGAGAAAAAGGGGGGGGSASNGQQQQQQQQQHQPAFVSAI
MFRRRPISDEEARERPALRALSGYRAVTPFSGGTGRRPQTPAFPVGVVGA
MVEKARRNDTGEGGGAGAGAGVGKEEGKVRKVKDVPDELLPLLVEKLHGK
ADKREDVVNAFVAEHPQCTKKSVHQKVKDMATRERSLHGGTVFVVNPEVI
ERLGVETRAVELKPSQAEAAAAAAALKAEKAAESAAAAAAAAAAGDDDGV
NTTPGGGPKTTGDKSKIAPLPGQLSLLGFLQTAKVKGATAGDSSPPSRAT
PKMLFGPNAKDEGDAPSSAGAGAGAVSSGTETCAGKAAAAEEGGGKEKGD
DASSKGGGGGGGDRAKEVRE
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mRNA from alignment at E_fasciculatus_S2_contig9170:47..6189-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9170.17237.1 ID=mRNA_E_fasciculatus_S2_contig9170.17237.1|Name=mRNA_E_fasciculatus_S2_contig9170.17237.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=6143bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9170:47..6189- (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG
GGGGGGGGGGGGGGGGGGGGGGGGAGGAGACCTGGGGGGCGGTGTTGTTG
TTCGCAGGAGCGAGGGAGGGTTCGGGCCCGAAGAGGTTGCGTTGTTCGAG
AGAAGGTTGAAGGACGGGGGCGAGCCGGAGGAGCTCCTGGTCAAGACCGC
GCGAGGTGTGTATGTGTGTGCGTGTTCGTTTGTGTCGACCGCGCAAGCCG
GCTGGCCACTGAAAAGTCGTCAGTCATCTCAGTGCGGGTGAAAGCACCAA
GCGCTTCTAAAGACTGTGGTCTGGGATCCGGGGTCATGGGGTAGGCTAGG
CTTTTCGCCGGACTAAAGACTAAAGGCAAGATGCGGTATCTACTATCTAC
AATGTAGCAGATGAAGAGAAATTGTGTGTATGTGCTCCATAGGGTTGCTC
ATGTGTGCTGCTCTTGCAGGTAGTGACGTTACAATCTGACTTCTGGTACA
GGCTGGACGAGATGATCACTCCGTTGTCCTCCTCTTCTTCCACCCTGACA
CCCCTTCCATTCCATGCCGTCTTGTGTCGATGGTGAATTGACGGTGCCGA
CTTTGTGCTTCGCGTCCGCGTCCGCAGAGATGGGCGAGCGATCCCTCAAG
CGCAAGGCCATCGCAGCCGCCCTGGCCGGGGACGACGAGGTAAGCGTTAC
ACCGACAGCAACAACAACAACAACAACAACAACAACAACAAAACAACAAC
AACCACACCCACGAAAACAACAGGAACAAGAACAAACACCACCACAAACA
ACAACGACAGCAGAGGGAGCATCCGTATAAGGCAGTGAACGAGTTTAAAC
GAGAGGGGGTCACACAAGGTTGGAGTGTAGCCGAAGCAAGCGGATAGTGG
AGGCGACGGAGGGCCGTGAACCCCTGTCTAGGATAGCCTTACGGCGCACT
CGATTTGCTCACGTATCCACCACGTCCTTCCTTCTTCACGCCGACCGCTA
CTATTCAGGTGGGCCTTTATATTCGTTACCTTGTCCCGATTTCGCGCAAA
CGAGGGAGGGCCAGCCAATAGTCGACCACGATGCCGTCGTCGGCCTTGTG
CTCGCACCCTCATACGTGAAAAACCTGCACCTGGTTGGCTGCTTGACACA
GCCGTCCCGCCGACAACCGCCGGTATCAAAGACGTTGTCGATGCTTGCGT
GTCGTCGTCGTCGCCGTCGTCGTGGCATGCATGCAGGTGGAAGTGGTCCG
CGCGAAGAAGATCAAGGTTACGGTAACCGTGGCGGGCGGCAGAGGCGGGT
TCGGAGAGCCCAGCTACTCGGAGACAAAACAGGTGCAACCAAACACGTGT
GTGTGTGTGTGTGTGTGTACATATACATCCTCCGCGCTCAGAGAACGCAC
ACATGTAACTGCGTCCCCAAAACTGAAAATTATAAAAAACCTAAAACAGT
ACCACAACATTTACTGTTTTTGATTGAAAACAAGATTGAGAGAACAAAAA
ATATCGAGAGACAGCAGTATCTGAACACATAATTTTTCATTCAGCTATTC
TTTATAGTCCTGTACATGTGATGGTCGTCATCGTAGAGACTACTGCCGTC
TCGGTAGATTTGTAACTTCAGACGACCGTGCCGACAAACGAACGAACCAG
GTGGAGGTTCGCAACCGCATGAAGCTGTTGCAGTTCCACCAGGACCACCG
GCCGGCCTACTGGGGCACGTGGTCCAAGAACAGCACCCAGGTCACGGGCA
GGCGGCCCCTCGGTCGGGACACCAAGGGAACGCTCAACTACGACTACGAT
AGCGAGGGTGCGTTTTCGTCACGGCGTCTGTGTGTCTTGTGTTTTTGTTC
GATCGGTACGGGCAGAAGGCGGTACTGGATGGAGATATCGGAACGGTTTT
CAACGTGAAAACAACAGCAATCATCCGCGCTAACCGGCTGCCCAATGAAT
AGACGTCGGTCTTAGTGCGGATGAAAACTGCAAATGCTTCGTCTTTGAGT
CCCGCACAAGTGTGATAGTTTCTATTGCCACACCGTTCATTCGGCATCTG
TGCGGAACCCCCCGCCTTTCTCTCGCTTGGTACTGAAATCGGTCGCCCCC
CCCCTCCCCCCCATACAGAGGACTGGGAGGAGGAGGCACAGGGCGAAGAT
CTTCTTTCGGACGAAGAGGTCGAACCGGAGGACAACCTAGACTACAAGGC
AAGGAACGCTGCTGTTGTAAATGTTGGTTTTGTTGTGGTGATGGTTTTGT
TGTTGTTGTTATTGGCGTGCGGATGATGATGATGATGATGGTGCTGGTGC
TGGTGATACCTGTTGCCGTAGGCGTGTTTTTGTATTTCATGTGGTGTCAG
CCAGTTCGTGTCCCCCACCTCGTTGTGGTATGGTTATCAATTAGACATTT
TTGCCGTTTTGGTGCTCGTTCCAAAGTGTTCTCTTTTGCTCCTTCCGTAA
CTGTTGGCGTGTAGCGTTTTCCCTACTGCCGCTTGCCTTCGTCGACAGTC
CCTACTGAACATCTCCTGCCCCATCCCATCCCGATCCACGTCCACCTTTT
GGAACACAATCACCGCAACCACCATCGCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCACCCACACCACAAACACAACAAACAC
AACCGCACCAGCAAAAGCACGCACAGGGAGAGGCGAGAGAAGAGAACAGA
ANNNNNNNNNNCCCCCTCCCTTCCTCCCCCCTCCCCCCCCACCATCCCCC
CCCCCCCCCCCCCCCCCCCCCCCTCCCCCTTTTGAAAAAAAACCCCCCCC
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCCCGTGTGTTTTTGCGAAAA
CGACATCACAACCATGTACATCTGAACAGGACGGGTGGCTCCGCCAGGAC
GACGAGTTCAGCGACGAGGAAATCGACCGCTTCGACAGCGGCAAGAGCAA
CAACAACGCCAACAACAACACCACCAACACCACCACCGGCCCCAACAACA
GGAAGGCCCTAGGCTTTGTCGGCGAGGGCGTGACCATCGGCGCCGGGGCG
GCTGCCGCCGCCGGAGGAGGAGGAGGAGGAGGAGGCTCCGCCTCCAACGG
GCAGCAGCAGCAGCAGCAGCAGCAACAACACCAGCCTGCCTTCGTCTCCG
CGATCATGTTCCGGCGTCGACCAATCAGCGACGAGGAGGCCCGCGAGAGG
CCGGCCCTGCGCGCGCTCTCCGGCTACCGCGCGGTCACCCCGTTCTCGGG
CGGGACCGGCAGGAGGCCGCAGACCCCCGCGTTCCCGGTGGGGGTGGTGG
GGGCCATGGTGGAGAAGGCCAGGCGCAATGATACGGGGGAGGGGGGAGGG
GCGGGGGCTGGGGCCGGGGTAGGGAAGGAGGAGGGGAAGGTCCGCAAGGT
CAAGGTGTGTGTGTTCGTGTGTGTTTGCCGACAGAACCGAACGGCTTATT
GTCCTTGTGGCGGAAAACGATGCGATGTCCTTTTAATCAACCCCCACAGT
AAGGAGTTCGTCCAACGGACCCTTCGATTATTGGGATAATGTCTTGTCTC
TTAAAAACGAGTATTGGTAGATAGTAGTTCTTCTTCTTCTTCCTTGTGTT
TCTGAATGCTGACCAAGCCCCCGGTGCGTCCTCCTCCATGTCTTGGGTGC
GCAGGACGTGCCGGACGAGCTTCTGCCCCTGCTGGTGGAGAAGCTTCACG
GCAAGGCCGACAAGCGGGAGGACGTCGTCAACGCCTTTGTCGCGGAGCAC
CCCCAATGCACCAAGAAGTCGGTGCGTTTTTTGTCCACGTACGATAGCGT
TTGTGGCACCCTTTATTCTGGGGATACAACACGATTGAATTGCGCACCAT
GATTTTAAAAGATGCTCCGTGTTCTTGAAGATTGGGTGTGTTTTGTATTG
TTTTTTGGTAGTGTTTAATTTTCAGTGTTGGCGACGCAATAATCTACGGC
ACACACGCGTTTTTTTTTGGGGGGGGGTGAATGTGCACCGTCGGAGGAAA
AGCGGTTGTAGCGCGCTTTCACGCGTTGCTGCTGCTACTGCTATTGGAGC
GCACGGCGCCTCTGAGTTGTTGGTGGGCGCGCTCATCTTGTGTTCGTTTT
TAAGCGCATGTAGAATCGCGTTGAAGCAAAGGCTCAAAGGCTCGTGGCCG
TCCCCCTCTGCGGAGCCCCTTGTTCGAAAGCCGCCGAAGAAACTTCGCAT
GCTGGTTGTGAATGCCTGGGTTTTCTGTCGGTGCCGTGTACAAAATTTTG
ACGCGTTGGGTCACTTGCCCGCCTCTCGTTCTCTCTGTGCACGCTTCCTT
CGTGACCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
CCCCCCCCCCCCCCCACACCGCCTCCCCCCCCCCCCCCCCGAAGAGCAGC
CCCCCCCCCCNNNNNNNNNNTTTTTTTTTTTTTTTTTTTTTTAAAAAAAA
AAAGACAACAAAAAATTGGGGGTGGGGGGTTTGGAAGCGTTTCCTCCCCC
TCTCCCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCGCCATCT
CGACCACCGACAACGACATCTTCTCAGGTCCACCAGAAGGTGAAGGACAT
GGCCACCCGCGAGCGAAGCCTACACGGCGGGACCGTCTTCGTCGTCAACC
CCGAGGTCATCGAGCGGCTGGGGGTCGAGACCCGCGCCGTCGAGCTCAAG
CCCTCCCAGGCCGAGGCCGCCGCCGCCGCCGCCGCCCTCAAGGCGGAGAA
GGCCGCCGAATCTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCGGCGACG
ATGACGGTGTCAACACCACGCCCGGGGGCGGGCCCAAGGTGGGCGGGATG
GCTGGGCGTTCGGTGGTTGGCTCGTCTCATCGCCCCTGTTGTTTTTTTGG
GCTCGAGAGGGACGAGGAGGAGGCGTGTACGGGTGACATCGTACTACTGC
ACCGCCCCGTTGTTTTAGTAGGTTTTCGGCCTATTCGTGCGAGAGGGAAG
AGGAGGAGGAGGCGTGTGCGCGCCAAGTTTAGTCGTGTAGTCCCTCTACC
AGCCATGGTTGTACGCGTGTGCATGGCTGTGCCTTCAGCAGAAAGTAAAC
TACTGCAGCTCACTACTGCCGGAACCTCTCCGCCTCTCTCTCTCTCTCTT
TCCCTCTGTATGTGTGTATGTCTTTCTCTCCGCCCCTCGCCCCTGTACTC
CATGCTCACCCCCTCACACCTTACTTTCTGTGGCGTGCTCAATCTCTCTC
TCTTCCTTTCCCGCCTCCCCAATTCGTTCCCCCTTTGCTTCTTCTTGATC
ATGATGGGGAAAAAAGACTACCGGGGACAAGTCGAAGATCGCCCCTCTCC
CGGGACAACTATCCCTGTTGGGCTTCCTGCAAACGGCCAAGGTGAAGGTG
ACACTGATGATGATCAAGTGTATAGGGTTTAGTATGGGGGCGCCTATTGT
ACTGGGACTAGTATGGGCGCGCGAAATGTACTGGTTTTAATAGATAGCAG
TCTTCAGTATGGACACCGACACGCACCGTGCGAGAAAATGAAGTACAGGA
GAAGACCAAATCGATGCTTTTGATGCCCAGGACAAGAGTTTGGTTTTTGG
CGTAGGGGGTGATGACGCTGCAGCACCACTGAAGACTGCTGGTTCCGTGT
AACAGCAACAACACACGCCGTAGATGATGCTCTGACAGAACCAACAAAAC
AACCAGCAACCTTAATCCCGTTGCCAACACGGGACCCCAAAGGTGATGCC
CTGACCAAACCAACAATAATTCAATAATTCAATAATTCCACTACCAGGGG
GGGGCTGTTGTTGCTGTGTACGAGTATGTAACAACGACACCCCGGAGATG
ATGCTCTGACAAAACCAACAACAATGAATTAATTCCAATAGGGAGCTACC
GCGGGGGACAGCTCCCCGCCCTCGCGGGCGACGCCCAAGATGCTCTTCGG
CCCCAACGCCAAGGACGAGGGGGACGCGCCTTCGTCGGCGGGAGCGGGAG
CGGGAGCCGTGAGTAGCGGCACCGAAACTTGCGCCGGCAAGGCTGCTGCT
GCGGAGGAGGGGGGGGGTAAGGAGAAGGGAGACGATGCCTCCAGCAAGGG
GGGGGGGGGCGGCGGAGGGGATCGCGCGAAAGAGGTGAGGGAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9170:47..6189-

>mRNA_E_fasciculatus_S2_contig9170.17237.1 ID=mRNA_E_fasciculatus_S2_contig9170.17237.1|Name=mRNA_E_fasciculatus_S2_contig9170.17237.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1860bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9170:47..6189- (Ectocarpus fasciculatus EfasUO2)
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGTGGG
GGGGGGGGGGGGGGGGGGGGGGGGAGGAGACCTGGGGGGCGGTGTTGTTG
TTCGCAGGAGCGAGGGAGGGTTCGGGCCCGAAGAGGTTGCGTTGTTCGAG
AGAAGGTTGAAGGACGGGGGCGAGCCGGAGGAGCTCCTGGTCAAGACCGC
GCGAGAGATGGGCGAGCGATCCCTCAAGCGCAAGGCCATCGCAGCCGCCC
TGGCCGGGGACGACGAGGTGGAAGTGGTCCGCGCGAAGAAGATCAAGGTT
ACGGTAACCGTGGCGGGCGGCAGAGGCGGGTTCGGAGAGCCCAGCTACTC
GGAGACAAAACAGGTGGAGGTTCGCAACCGCATGAAGCTGTTGCAGTTCC
ACCAGGACCACCGGCCGGCCTACTGGGGCACGTGGTCCAAGAACAGCACC
CAGGTCACGGGCAGGCGGCCCCTCGGTCGGGACACCAAGGGAACGCTCAA
CTACGACTACGATAGCGAGGAGGACTGGGAGGAGGAGGCACAGGGCGAAG
ATCTTCTTTCGGACGAAGAGGTCGAACCGGAGGACAACCTAGACTACAAG
GCAAGGAACGCTGCTGTTGTAAATGACGGGTGGCTCCGCCAGGACGACGA
GTTCAGCGACGAGGAAATCGACCGCTTCGACAGCGGCAAGAGCAACAACA
ACGCCAACAACAACACCACCAACACCACCACCGGCCCCAACAACAGGAAG
GCCCTAGGCTTTGTCGGCGAGGGCGTGACCATCGGCGCCGGGGCGGCTGC
CGCCGCCGGAGGAGGAGGAGGAGGAGGAGGCTCCGCCTCCAACGGGCAGC
AGCAGCAGCAGCAGCAGCAACAACACCAGCCTGCCTTCGTCTCCGCGATC
ATGTTCCGGCGTCGACCAATCAGCGACGAGGAGGCCCGCGAGAGGCCGGC
CCTGCGCGCGCTCTCCGGCTACCGCGCGGTCACCCCGTTCTCGGGCGGGA
CCGGCAGGAGGCCGCAGACCCCCGCGTTCCCGGTGGGGGTGGTGGGGGCC
ATGGTGGAGAAGGCCAGGCGCAATGATACGGGGGAGGGGGGAGGGGCGGG
GGCTGGGGCCGGGGTAGGGAAGGAGGAGGGGAAGGTCCGCAAGGTCAAGG
ACGTGCCGGACGAGCTTCTGCCCCTGCTGGTGGAGAAGCTTCACGGCAAG
GCCGACAAGCGGGAGGACGTCGTCAACGCCTTTGTCGCGGAGCACCCCCA
ATGCACCAAGAAGTCGGTCCACCAGAAGGTGAAGGACATGGCCACCCGCG
AGCGAAGCCTACACGGCGGGACCGTCTTCGTCGTCAACCCCGAGGTCATC
GAGCGGCTGGGGGTCGAGACCCGCGCCGTCGAGCTCAAGCCCTCCCAGGC
CGAGGCCGCCGCCGCCGCCGCCGCCCTCAAGGCGGAGAAGGCCGCCGAAT
CTGCCGCTGCTGCTGCTGCTGCTGCTGCTGCCGGCGACGATGACGGTGTC
AACACCACGCCCGGGGGCGGGCCCAAGACTACCGGGGACAAGTCGAAGAT
CGCCCCTCTCCCGGGACAACTATCCCTGTTGGGCTTCCTGCAAACGGCCA
AGGTGAAGGGAGCTACCGCGGGGGACAGCTCCCCGCCCTCGCGGGCGACG
CCCAAGATGCTCTTCGGCCCCAACGCCAAGGACGAGGGGGACGCGCCTTC
GTCGGCGGGAGCGGGAGCGGGAGCCGTGAGTAGCGGCACCGAAACTTGCG
CCGGCAAGGCTGCTGCTGCGGAGGAGGGGGGGGGTAAGGAGAAGGGAGAC
GATGCCTCCAGCAAGGGGGGGGGGGGCGGCGGAGGGGATCGCGCGAAAGA
GGTGAGGGAG
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