mRNA_E_fasciculatus_S2_contig9169.17234.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9169.17234.1
Unique NamemRNA_E_fasciculatus_S2_contig9169.17234.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9169.17234.1 vs.
Match: EsV-1-7 (n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI)

HSP 1 Score: 159 bits (401), Expect = 2.810e-40
Identity = 293/306 (95.75%), Postives = 299/306 (97.71%), Query Frame = 1 
Query:    1 MEDRQCEWAACKKQPYYALDVRDAPKFCYMHKSDIHVDVRKKSCEVDKCEVKPNYGFEGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFPGQKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTGKATWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKTDRVRRRCRLHXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKVR 918
            M DRQCEWAAC+KQPY+ALD+RDAPKFCYMHKSDIHVDVRKKSCE DKC+VKPNYGFEGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX NFPG+KKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX KTG+A WXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKTDRVRRRCRL XXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLK R
Sbjct:    1 MADRQCEWAACQKQPYFALDMRDAPKFCYMHKSDIHVDVRKKSCEADKCDVKPNYGFEGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNFPGEKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKTGRAKWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKTDRVRRRCRLXXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKTR 306
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BLAST of mRNA_E_fasciculatus_S2_contig9169.17234.1 vs.
Match: EsV-1-7 (n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMP7_ECTSI)

HSP 1 Score: 74.3 bits (181), Expect = 4.630e-11
Identity = 243/301 (80.73%), Postives = 260/301 (86.38%), Query Frame = 1 
Query:   16 CEWAACKKQPYYALDVRDAPKFCYMHKSDIHVDVRKKSCEVDKCEVKPNYGFEGGVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNFPGQKKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXEKTGKATWXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFKTDRVRRRCRLHXXXXXXXXXXXXXXXXXXXXXXCCGHLGAKARFCSEHKQEGMVNLKVR 918
            C    CKKQPYYA   +  PK+C++HK   H+DVR K CEV  CE++P+YG++G  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXN+ GQ+KXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX K G+  W   XXXXXXXXXXXXXXXXXXXXXXXXX +  DR+RRRCRLH      XXXXXXXXXXXXXXXX CG  G K RFCSEHKQ+GM+NLK R
Sbjct:    5 CGEPECKKQPYYAEPGQKKPKYCFLHKKPGHIDVRNKRCEVPNCEIRPHYGYDGEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNYAGQRKXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXKEGRPMWCPDXXXXXXXXXXXXXXXXXXXXXXXXXGYDRDRIRRRCRLHKLDDMVXXXXXXXXXXXXXXXXXCGFPGLKPRFCSEHKQDGMLNLKTR 305
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BLAST of mRNA_E_fasciculatus_S2_contig9169.17234.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KYH5_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 2.920e-9
Identity = 26/54 (48.15%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:   16 CEWAACKKQPYYALDVRDAPKFCYMHKSDIHVDVRKKSCEVDKCEVKPNYGFEG 177
            C    CKKQPYY    +  PK+C++HK    +DVR K CEV  CE++P+YG++G
Sbjct:    5 CGETECKKQPYYGEPGQKKPKYCFLHKKPGQIDVRNKRCEVPNCEIRPHYGYDG 58
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9169.17234.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
EsV-1-72.810e-4095.75n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQ52_ECTSI[more]
EsV-1-74.630e-1180.73n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7... [more]
Uncharacterized2.920e-948.15protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9169contigE_fasciculatus_S2_contig9169:1543..6057 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score160.6
Seed ortholog evalue1.2e-36
Seed eggNOG ortholog2880.D7FQ52
Model size918
Hectar predicted targeting categoryother localisation
Exons6
EggNOG OGs29ZCP@1,2RXW0@2759
Cds size918
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9169.17234.1prot_E_fasciculatus_S2_contig9169.17234.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9169 1543..6057 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842568.0728986-CDS-E_fasciculatus_S2_contig9169:1542..16701696842568.0728986-CDS-E_fasciculatus_S2_contig9169:1542..1670Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9169 1543..1670 +
1696842568.0857165-CDS-E_fasciculatus_S2_contig9169:2868..29861696842568.0857165-CDS-E_fasciculatus_S2_contig9169:2868..2986Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9169 2869..2986 +
1696842568.1003954-CDS-E_fasciculatus_S2_contig9169:3575..37011696842568.1003954-CDS-E_fasciculatus_S2_contig9169:3575..3701Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9169 3576..3701 +
1696842568.110603-CDS-E_fasciculatus_S2_contig9169:4005..41571696842568.110603-CDS-E_fasciculatus_S2_contig9169:4005..4157Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9169 4006..4157 +
1696842568.1212988-CDS-E_fasciculatus_S2_contig9169:4995..51991696842568.1212988-CDS-E_fasciculatus_S2_contig9169:4995..5199Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9169 4996..5199 +
1696842568.1320455-CDS-E_fasciculatus_S2_contig9169:5867..60571696842568.1320455-CDS-E_fasciculatus_S2_contig9169:5867..6057Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9169 5868..6057 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9169.17234.1

>prot_E_fasciculatus_S2_contig9169.17234.1 ID=prot_E_fasciculatus_S2_contig9169.17234.1|Name=mRNA_E_fasciculatus_S2_contig9169.17234.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=306bp
MEDRQCEWAACKKQPYYALDVRDAPKFCYMHKSDIHVDVRKKSCEVDKCE
VKPNYGFEGGVPRFCAAHKEDGMQNLARGRCKHAGCLKFASCGKEGGSPE
VCGDHKTSAMVNLNGRRCALPGCKTHASYGIEGTRPRYCAKHKTMDMMNL
TVKKCAFDGCLAQPSYNFPGQKKPRFCSKHALEGMEDVLDRHCAMSGCDR
QPIYGNTGEKTGKATWCPNHRPANSHDVKTSRCQVEGCQKHPSYGFKTDR
VRRRCRLHRLEGMVDVKSPKCELLSCYKQPCCGHLGAKARFCSEHKQEGM
VNLKVR
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mRNA from alignment at E_fasciculatus_S2_contig9169:1543..6057+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9169.17234.1 ID=mRNA_E_fasciculatus_S2_contig9169.17234.1|Name=mRNA_E_fasciculatus_S2_contig9169.17234.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4515bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9169:1543..6057+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGGATCGGCAGTGCGAATGGGCCGCCTGTAAGAAGCAGCCCTACTA
CGCGCTGGACGTGCGGGACGCGCCCAAGTTCTGCTACATGCACAAGTCGG
ACATCCATGTGGATGTCCGCAAGAAGAGGTACTGCTGCTGCTGCTGCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGTGGGAGAGCAGAGTAGGA
TAGGGAAGAAGAAGAAGACGAAAAAAGTTACAGAACGGAGAGAGAGAGAG
AGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGACGGGGGCGTGA
AAGAGGGGAGATGATTTCATGGCGGCTTTACGGGAGTGTTTCATCGACTG
CTGTATGCATGTGATACCTCCCGCGAAAAGCAGGTAGGCCAACCATGCGT
GTGAACACCACCGTCTCTTTTTCAAAATTGCGACGCCAACGCCGCTGCCC
TCTTCCACCTTTTGTAGGGGGGGATACCTCCTATTTGGCGGCAGCGGGCC
TGGTCAACTTGGCGGGATAGTTCCGCCTGACCGGTTGGTCATAGGGCATC
GGGGCGAGAAAGGGGCAGGGGCGGGCAAAGCACGACCATATGTAGACCCC
TCTGTTGAGCACGACCATATGTAGATCCCTCTGTTGAAAATAGCATCCGT
ATAGGTGCCCTGCGTGTGGTTGGCGTCCACACGGCACGCAGCCTTTGCCA
GCAGCTTACACGTGCACGTGGTATGATAAGTCTCTCGCTTTTCATCGCAG
TAGATACGGATGTTGATCTTGCCCCCCGGCCCTCGTCTCGATGGCCTGCT
ACACGTTAAGTGGAGACTATAGTGTCTCTACAGGATCTACGGTGTGTGCG
TTGTTTCTTACTTAGCAGCCAATGAAGACTTCAGGCACCTCGAAGCTAAT
ACGAAAGAGTAGGTGGGGGTAGCACATAGGTGGGGCCTCTTGTATTCTTG
AGAGGAGACACTGAAGATCACCCTTACACTGAAAACTGAACCACCGACCC
CGCAGCCCTCGTGAGAGTAGTCGAGCGCGAGATTACAAGCTCAGCACGAA
CGGAGACATAATCTGTCCATAGAGATTTTGATCGGGACGATTCACTGAAC
TCACAGTCTTACAGACAGCGCACTCAGTCTCCTGCCTCGTCCGCTTGCAC
TCGCGCATTTTATAGCGCAGTGGTTTGGGAGAGATTTTCCCTCTCCCCCC
GCCGTCTCCAACCCATTAGTCCGTGCCTCCCTCCCTACTCCCTTTTTTGT
GCACGCGTGCGTGCTCCGTCTTGACCAACAACAACACGACCGGGCGCAAA
ATCTGTTTACCCTACGACGGCCACAGCTGCGAAGTGGACAAGTGCGAGGT
CAAGCCCAACTACGGGTTCGAGGGAGGCGTCCCTCGCTTCTGCGCGGCGC
ACAAAGAGGACGGGATGCAGAACCTCGCCAGGGGCCGCTGTAAGGTAAGG
TGACAAACGTCGCGGGACACAGTGCACGCGTCTTTGCGAAGACATACGCA
GTCTCTCGTGCAACAGGAACATGTAGCAGGCTGTGTGTTTTTTTAAGTAG
TCGTTGGAGGAGGGGCCCCGCATTTCTCTCGGGAATGTTGGGTTGAGAGC
TAAGCTTCTTGCGTGTGGGCGTTACAGGCAGGAATACGTCATGTCGGGGG
AGTGTAGGCAGCCTTAAAGCCGAAAGGCATGCCCCCCCCCCCCCCCCCCC
CCCCCTCCTAAGGAGCACGAATTTCCCCGCAAGGACAAAATCGGCCAACG
GCGGGGGGGGGGGGGAGGGGGTAGAGATTTCGTACGCTCTGCGGACCAAC
AGCTCTATAACGGTTCGCGAGCCCGGGCCTAGGGATACCTACTGCGGGGA
TAACATGATAGGTTGCCTCACGTTGTCACTTTCTAAGGCGGCACGAAGCA
GTATTATCATTATCGTTAGACTGTTGCTGTACGTCCGAGGCCGTGCCTCG
ATACGTGGAACAAACTTGACAACAACATCGTAGCGATACGCTCAACCAAA
ATCGATGATTTTTCTCTTTATTCGTAACCGCAGCATGCCGGGTGCCTCAA
ATTCGCCAGCTGCGGCAAGGAAGGAGGCTCGCCCGAGGTGTGCGGAGACC
ACAAGACCAGCGCCATGGTCAACCTCAACGGGAGACGCTGCGCTCTGCCT
GGCTGCAAGGTAAACGAGAGGGGGGAAACAAAACAAGGGACAAAAATATT
GCAACAGCAGTCGGAACTGGGAGAAGATGGCGAGATGGAAGCAAAACCGA
AAGCTCTGTTCGGAGGCGTGATGATTGTTGATGTTGTTTTGCCTGGCTTG
TGTACGACCGTGTTTGGTGGAGAGATATCCAGCAGGACTAAACTTTTCGT
AGATCACGCACCATTGGTTCGTACCCTCTTACGGTCCCAAAAGGGGCTGC
AGTTCGTTGTCTCGTGATACAGCACATGTGTCTAACTCCAGAATATGCTT
GAACCAATAACAGACGCACGCGAGCTACGGCATCGAGGGTACGCGGCCTC
GCTACTGCGCCAAGCACAAGACGATGGACATGATGAACCTCACCGTCAAG
AAGTGCGCCTTCGACGGCTGCCTGGCACAGCCCAGCTACAACTTTCCCGG
CCAGAAAAAGCCGAGGTGGGAGGAGATAGACAGAGAGAGGGGGGGGGAGA
TGCAGAGAGAGACGGACGAAAAGACGAGGCGATGGGCAAACAGACAGACA
GATAGATGAGCAGACTGACAGATAGACAGGAGAGGAGATTGAAAACGACG
AGGAAGATGAGACTCAATCGGGTATTTCGCTTGGGGAAAAAACAGTCGAA
CTAACTCAGCCCTGTTTCTGCCTCTGGTTGGGTTGGGATGGAAAACTAGC
CGAGAGAGGCGAGTCAGAGGGCGACTCGTGTTGGACTGACTGATGCTTTA
AGTTAGATGGATGGGTCGGCGGTGGACACTAGCAAGGATGGGTGGGGCCT
CTGTCCAGATTCTGGATATGGGACGCCTGGGTTTACTCCTGCTGCCTCAA
GAGGAATGCACATTTGGGGGGTGAAGATTACGGGCAACTGGGGCAGGCTG
GCAGTAAGTGAGGGTATTGTAGAAAGAGGAGGTGGTGGGTGCGTGCGTGC
GAGAGCGAAGCGTGTTGAAGGCGTACGTCAGTGGCTTCCAGAAGGACGGA
CGGTGAATCAGGCGTTTTTTCCCCCTCGGTTAAAATCCAGGGGCACAGCC
GAGGTTTCTTTGTCGGGCGTGTATCGGATATATAAAAAACGTGCGCGTGC
TGCATGCAAGCGAAAGTATATCCTCTCACGGCCAAACACGATCCCATCTT
CCCCGCAAGTCCCCACGGGAATGTATCGTACGAGCCGGGCGTGACCGGCA
CGAGAAACAGCCCCTTACAATACAACATCGCGAGAGAGCACTCAAGAGCT
TTCCTTCTTTTTTTTTGCTCGACACGGGCGCCGATCACAACATGAAATCT
CAGGTTCTGCTCGAAACACGCCTTGGAAGGGATGGAGGACGTGCTCGACC
GCCACTGCGCCATGTCCGGGTGCGACCGCCAGCCCATCTACGGCAACACC
GGCGAGAAGACGGGCAAGGCGACGTGGTGCCCCAACCACCGTCCGGCCAA
CAGCCACGACGTCAAGACCTCGCGCTGCCAGGTGGAAGGCTGCCAGAAGC
ACCCCAGGTGTGCGGGGACGATATGCGTTCGTTGTCGTAGGATGTTTTTT
TTTTGTCGGCGATGTATGGTGCTTGTTGTTGCTGGAGCTCTTGGCGTGTT
GTTGTTGTTGTTGTTGTTGTTGTTGTTGCTGTTGTTGTTTGGTGGTGGTG
GTGGTGGTGGTGGTGGTGCGGCCAAGGTGGCATGCGCTGGTCGTTGTGCT
CGTTTTGGGGGCGCTACCATCACTATGTATGGCGGCCTTCTTGCGGCACG
CCGGCCGTACCAATGAGAAACATGAAGCTCTCCCGCAAGACAAGAATGGC
ATCTTAGGTTTTTTCTTCACCTCGATGGCGACATATGTTGAATGGCATCT
TAGGTTTTTTCTTCACCTCGATGGCGACATATGTTGAAGAGCGAATATAT
AACGTTCGTCACGACGCGCAAAGCTGAGAACCGACAATGGTCAGCACTCC
CTACTACGTAACTCGCCGAACAGCACATCCCCCCCGCGTCGCTCGATGTA
TTAAATGCCTGGTCTTGGTAGGACGACAACACACGAATTGCCCCTTCCGA
CCTTCCTAGGGATGCTGTGGTCCTGCCATTTTCTAACAGGCTGCTTTGCA
GGACCATCCGTACATGCAAGATGCCGAACAACACACCCACCCCTTTTCCC
ACCCTTCGCCACAACAACCGGACAGCTACGGGTTCAAGACCGATCGCGTG
CGTCGGCGCTGCCGCCTGCACCGGCTCGAGGGCATGGTGGACGTCAAGAG
CCCCAAGTGCGAGCTGCTGTCGTGCTACAAGCAGCCGTGCTGCGGCCACC
TCGGTGCGAAGGCGAGGTTTTGCTCGGAGCACAAGCAGGAGGGCATGGTC
AACCTCAAGGTGCGG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9169:1543..6057+

>mRNA_E_fasciculatus_S2_contig9169.17234.1 ID=mRNA_E_fasciculatus_S2_contig9169.17234.1|Name=mRNA_E_fasciculatus_S2_contig9169.17234.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=918bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9169:1543..6057+ (Ectocarpus fasciculatus EfasUO2)
ATGGAGGATCGGCAGTGCGAATGGGCCGCCTGTAAGAAGCAGCCCTACTA
CGCGCTGGACGTGCGGGACGCGCCCAAGTTCTGCTACATGCACAAGTCGG
ACATCCATGTGGATGTCCGCAAGAAGAGCTGCGAAGTGGACAAGTGCGAG
GTCAAGCCCAACTACGGGTTCGAGGGAGGCGTCCCTCGCTTCTGCGCGGC
GCACAAAGAGGACGGGATGCAGAACCTCGCCAGGGGCCGCTGTAAGCATG
CCGGGTGCCTCAAATTCGCCAGCTGCGGCAAGGAAGGAGGCTCGCCCGAG
GTGTGCGGAGACCACAAGACCAGCGCCATGGTCAACCTCAACGGGAGACG
CTGCGCTCTGCCTGGCTGCAAGACGCACGCGAGCTACGGCATCGAGGGTA
CGCGGCCTCGCTACTGCGCCAAGCACAAGACGATGGACATGATGAACCTC
ACCGTCAAGAAGTGCGCCTTCGACGGCTGCCTGGCACAGCCCAGCTACAA
CTTTCCCGGCCAGAAAAAGCCGAGGTTCTGCTCGAAACACGCCTTGGAAG
GGATGGAGGACGTGCTCGACCGCCACTGCGCCATGTCCGGGTGCGACCGC
CAGCCCATCTACGGCAACACCGGCGAGAAGACGGGCAAGGCGACGTGGTG
CCCCAACCACCGTCCGGCCAACAGCCACGACGTCAAGACCTCGCGCTGCC
AGGTGGAAGGCTGCCAGAAGCACCCCAGCTACGGGTTCAAGACCGATCGC
GTGCGTCGGCGCTGCCGCCTGCACCGGCTCGAGGGCATGGTGGACGTCAA
GAGCCCCAAGTGCGAGCTGCTGTCGTGCTACAAGCAGCCGTGCTGCGGCC
ACCTCGGTGCGAAGGCGAGGTTTTGCTCGGAGCACAAGCAGGAGGGCATG
GTCAACCTCAAGGTGCGG
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