mRNA_E_fasciculatus_S2_contig9164.17232.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9164.17232.1
Unique NamemRNA_E_fasciculatus_S2_contig9164.17232.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGQ3_ECTSI)

HSP 1 Score: 191 bits (484), Expect = 3.360e-60
Identity = 86/88 (97.73%), Postives = 88/88 (100.00%), Query Frame = 1
Query:    1 EQNEDGWTPLHACCHSATTASIGLRILEEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL 264
            +QNEDGWTPLHACCHSATTA+IGLRILEEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL
Sbjct:  109 QQNEDGWTPLHACCHSATTAAIGLRILEEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL 196          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JEM2_9PHAE)

HSP 1 Score: 131 bits (329), Expect = 1.870e-37
Identity = 59/61 (96.72%), Postives = 60/61 (98.36%), Query Frame = 1
Query:   82 EEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL 264
            +EVVAMGGDLN RTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL
Sbjct:   13 QEVVAMGGDLNPRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL 73          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3UV44_HETAK)

HSP 1 Score: 118 bits (296), Expect = 2.310e-30
Identity = 53/88 (60.23%), Postives = 64/88 (72.73%), Query Frame = 1
Query:    4 QNEDGWTPLHACCHSATTASIGLRILEEVVAMGG-DLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL 264
            QNE GW PLHACCHS  TA+ G+ ++E + A GG D N RT RGPG FN+G+TPLH+A AYGV+ +VE L+ AGADPN  N   W PL
Sbjct:  119 QNEAGWLPLHACCHSQATAAAGVALIEAMAASGGADWNARTARGPGPFNAGWTPLHIAAAYGVRPVVEELLAAGADPNVENSLTWTPL 206          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: Hypothetical (protein n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TU65_9STRA)

HSP 1 Score: 118 bits (296), Expect = 3.210e-29
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 1
Query:    7 NEDGWTPLHACCHSATTASIGLRILEEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFD 252
            NE GWTPLHACCHS    + G  +L EVV + GDLN RT+RGPG+FN+ +T LHMACAYG+  +V+ALI+AGAD +CRN  D
Sbjct:  114 NEAGWTPLHACCHSVGAVAAGKEVLAEVVRVNGDLNARTERGPGSFNANWTALHMACAYGILPMVQALIEAGADVDCRNSID 195          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: Hypothetical (protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XYQ7_9STRA)

HSP 1 Score: 112 bits (279), Expect = 6.370e-28
Identity = 49/86 (56.98%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    1 EQNEDGWTPLHACCHSATTASIGLRILEEVVAMGGD---LNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDF 249
            E NE+GW PLHACCH+   A  G  IL+E+V  G     +N +TKRGPG +N G+TPLHMACAYG+  + EAL+ AGADPNC+N  
Sbjct:   75 EANENGWLPLHACCHNQGLAGAGCEILDEMVRKGAGADLINAKTKRGPGPYNKGWTPLHMACAYGIPRVAEALLVAGADPNCQNSL 160          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: Hypothetical (protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZT12_9STRA)

HSP 1 Score: 110 bits (274), Expect = 3.110e-26
Identity = 51/86 (59.30%), Postives = 61/86 (70.93%), Query Frame = 1
Query:    7 NEDGWTPLHACCHSATTASIGLRILEEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL 264
            NEDGWTPLHACCH+  T    L IL+E+V     L  +T RGPG + SG+T LHMA AYGV+ LVEAL++AGAD N +ND  W PL
Sbjct:   93 NEDGWTPLHACCHNHQTMGAALDILKELVKRKASLERKTVRGPGAYASGWTVLHMAAAYGVEPLVEALLEAGADVNTKNDQGWTPL 178          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: Aste57867_22255 (protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJM7_9STRA)

HSP 1 Score: 104 bits (259), Expect = 3.150e-24
Identity = 47/85 (55.29%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    7 NEDGWTPLHACCHSATTASIGLRILEEVVAMGG--DLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDW 255
            N+DGWTPLHA CH+      G  IL+ ++A  G  DLNL+T RGPG+F+SG+TPLH+ACAYG++ LV  LIKA AD +  N   W
Sbjct:  122 NKDGWTPLHASCHTLNAVDAGKAILKAMLAQDGSVDLNLKTSRGPGSFSSGYTPLHIACAYGMEPLVVKLIKANADVHVTNSVQW 206          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: U-box (domain-containing protein n=7 Tax=Aphanomyces astaci TaxID=112090 RepID=W4G3R2_9STRA)

HSP 1 Score: 103 bits (258), Expect = 4.800e-24
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    7 NEDGWTPLHACCHSATTASIGLRILEEVVAM--GGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDFDW 255
            N+DGWTPLHA CH+      G  IL+ ++A     DLN++T RGPG+F+SG+TPLH+ACAYG++ LV  LIKA AD +  ND  W
Sbjct:  124 NKDGWTPLHASCHTLNAVDAGKAILKAILAQDPSADLNVKTSRGPGSFSSGYTPLHIACAYGMEALVVKLIKASADVHVTNDVHW 208          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: Hypothetical (protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WT85_9STRA)

HSP 1 Score: 103 bits (256), Expect = 8.780e-24
Identity = 48/81 (59.26%), Postives = 56/81 (69.14%), Query Frame = 1
Query:    7 NEDGWTPLHACCHSATTASIGLRILEEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRNDF 249
            NEDGWTPLH+CCHS TT S GL ILEE+      L ++TKRGP   NSG+T LHMA AYGV+ LV  L+   A+ NCRN  
Sbjct:  107 NEDGWTPLHSCCHSHTTVSAGLAILEEMSYRNASLEVKTKRGPSAHNSGWTALHMASAYGVEPLVVQLLAHRANANCRNSL 187          
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Match: U-box (domain-containing protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3X801_GLOUD)

HSP 1 Score: 102 bits (253), Expect = 2.370e-23
Identity = 45/81 (55.56%), Postives = 59/81 (72.84%), Query Frame = 1
Query:    1 EQNEDGWTPLHACCHSATTASIGLRILEEVVAMGGDLNLRTKRGPGNFNSGFTPLHMACAYGVKELVEALIKAGADPNCRN 243
            + N D WTPLH+CCH+      G+ IL+E+VA   DLNL TKRGPG+F+ G+TPLH+ACAYG++ L   LI+AGA+ N  N
Sbjct:  127 QPNFDNWTPLHSCCHTLNAQEAGISILQELVAQKADLNLVTKRGPGSFSCGWTPLHIACAYGLETLSLKLIRAGANVNVMN 207          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9164.17232.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized3.360e-6097.73protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized1.870e-3796.72protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Hypothetical2.310e-3060.23protein (Fragment) n=1 Tax=Heterosigma akashiwo Ta... [more]
Hypothetical3.210e-2962.20protein n=2 Tax=Phaeomonas parva TaxID=124430 RepI... [more]
Hypothetical6.370e-2856.98protein (Fragment) n=1 Tax=Fibrocapsa japonica Tax... [more]
Hypothetical3.110e-2659.30protein n=1 Tax=Pelagomonas calceolata TaxID=35677... [more]
Aste57867_222553.150e-2455.29protein n=1 Tax=Aphanomyces stellatus TaxID=120398... [more]
U-box4.800e-2454.12domain-containing protein n=7 Tax=Aphanomyces asta... [more]
Hypothetical8.780e-2459.26protein n=1 Tax=Rhizochromulina marina TaxID=10348... [more]
U-box2.370e-2355.56domain-containing protein n=1 Tax=Globisporangium ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9164contigE_fasciculatus_S2_contig9164:229..1321 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score193.0
Seed ortholog evalue6e-47
Seed eggNOG ortholog2880.D8LGQ3
Model size264
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.ankyrin repeats
EggNOG OGs2D5WU@1,2SZZ8@2759
Cds size264
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842567.9269385-CDS-E_fasciculatus_S2_contig9164:228..3071696842567.9269385-CDS-E_fasciculatus_S2_contig9164:228..307Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9164 229..307 -
1696842567.942864-CDS-E_fasciculatus_S2_contig9164:866..9671696842567.942864-CDS-E_fasciculatus_S2_contig9164:866..967Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9164 867..967 -
1696842567.9534948-CDS-E_fasciculatus_S2_contig9164:1237..13211696842567.9534948-CDS-E_fasciculatus_S2_contig9164:1237..1321Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9164 1238..1321 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9164.17232.1prot_E_fasciculatus_S2_contig9164.17232.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9164 229..1321 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9164.17232.1

>prot_E_fasciculatus_S2_contig9164.17232.1 ID=prot_E_fasciculatus_S2_contig9164.17232.1|Name=mRNA_E_fasciculatus_S2_contig9164.17232.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=88bp
EQNEDGWTPLHACCHSATTASIGLRILEEVVAMGGDLNLRTKRGPGNFNS
GFTPLHMACAYGVKELVEALIKAGADPNCRNDFDWGPL
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mRNA from alignment at E_fasciculatus_S2_contig9164:229..1321-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9164.17232.1 ID=mRNA_E_fasciculatus_S2_contig9164.17232.1|Name=mRNA_E_fasciculatus_S2_contig9164.17232.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1093bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9164:229..1321- (Ectocarpus fasciculatus EfasUO2)
GAGCAGAATGAGGACGGATGGACGCCCCTCCACGCTTGCTGCCACAGCGC CACAACGGCCTCGATCGGCCTCAGGATTCTGGAGGTAACCGGGCGGGGGG TATACCCACTCGCGAAAGGAGCCATTCTGTGCGCATCATCCTGAACCATT TTATAGAGCACCATTTTATAGAATATGTTGGCCTTGGATAGGCGTCGGGA GATGCTTCCGGTGGGCGACTATAAAGAATGTGTTTGTAAGCACCGGACTT TATCTTGTTGGGGATGTATGGAGTACAGTTCCGATGCTTCCCGTGTTCAC TAGAGAGAGATTCTCCGTGATCATGACCCCCGCGGTTTCTCTCCGCAATC GCAGGAAGTGGTGGCCATGGGGGGAGATCTGAACCTGAGGACAAAGAGAG GTCCGGGTAACTTCAACTCGGGCTTCACTCCACTACACATGGCCTGTGCC TACGGGTAAGAGAAAGAGAGAGAGAGAGAGAAAGAGAGAGAGAGAACGAG AGAGAGAGAATGCAATCAAGTCATTTACATGTACGACGTAGACCGAGTCG CATCACTTTACCAGGCAGCAGTGCGTGCATCGTCTCCATGTGTTCACGGC GCCTGATGTTCTAGCGCCCGCTGGAATTTCCGCGCCTTGGCTCAAGAGGT TGTTGTGAACTCGTCACGCGGGGTTGTGGAAGGTAGTTGGCGCCGACCCA CACACCCTACCCCACTTCTTACGCGACGTACGATCGTGATGGACCCGAGA GCTTACAAGCCCCGGGCGTGAAAATTAGTCCTATATGCATACAAAAATTA AAGGGAAGAGGAAAGGCTAATAAATAGTCCAATCCTGACCCGTCACCCTG AACCGGCGGCACAATCTACGTATACACTTCTGGCTTTTGAACACTCCTGT TAAAACGAACCTTTCGGCGGTGTGACTCAAGACACGTCCCACTCTCATCA GACAAAGCATCTATGACGACTAAAAACCTAGAGCGCCACCTCGTTCTGCA AAACTTATACATAGCGTGAAGGAGCTTGTGGAGGCGCTAATCAAGGCCGG GGCTGACCCCAACTGCCGGAACGACTTCGATTGGGGACCCCTG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9164:229..1321-

>mRNA_E_fasciculatus_S2_contig9164.17232.1 ID=mRNA_E_fasciculatus_S2_contig9164.17232.1|Name=mRNA_E_fasciculatus_S2_contig9164.17232.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=264bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9164:229..1321- (Ectocarpus fasciculatus EfasUO2)
GAGCAGAATGAGGACGGATGGACGCCCCTCCACGCTTGCTGCCACAGCGC
CACAACGGCCTCGATCGGCCTCAGGATTCTGGAGGAAGTGGTGGCCATGG
GGGGAGATCTGAACCTGAGGACAAAGAGAGGTCCGGGTAACTTCAACTCG
GGCTTCACTCCACTACACATGGCCTGTGCCTACGGCGTGAAGGAGCTTGT
GGAGGCGCTAATCAAGGCCGGGGCTGACCCCAACTGCCGGAACGACTTCG
ATTGGGGACCCCTG
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