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Homology
BLAST of mRNA_E_fasciculatus_S2_contig9163.17231.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKH2_ECTSI) HSP 1 Score: 427 bits (1098), Expect = 2.270e-146 Identity = 231/251 (92.03%), Postives = 235/251 (93.63%), Query Frame = 1
Query: 1 MSWAEPADMDTLSELPRQSGVGSSGRPPKLSRTASSVGRAAKSRGGSGGASKSERRLLMEAKAGVGAAIAEDRQERLVAKRRARRLVRFLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLKEVLERSGALGKRRRGKXXXXXXXXXXRLRRGASGINSSSRGSG 753
MSWAEPADMDTLSELPRQS VGSSGRPPKLSRT SSVGR+AKSRGGSGGASKSERRLLMEAKAGVGAAIAEDRQERL+AKRRARR+VR LYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCL+EVLERSGA GKRR K RLRRGASGINSSSRGSG
Sbjct: 1 MSWAEPADMDTLSELPRQSMVGSSGRPPKLSRTTSSVGRSAKSRGGSGGASKSERRLLMEAKAGVGAAIAEDRQERLIAKRRARRIVRVLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLREVLERSGAFGKRRGKKSASSSSR---RLRRGASGINSSSRGSG 248
BLAST of mRNA_E_fasciculatus_S2_contig9163.17231.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JH79_9PHAE) HSP 1 Score: 283 bits (724), Expect = 6.380e-94 Identity = 152/182 (83.52%), Postives = 157/182 (86.26%), Query Frame = 1
Query: 214 DRQERLVAKRRARRLVRFLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQ----DRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLKEVLERSGALGKRRRGKXXXXXXXXXXRLRRGASGINSSSRG 747
DRQERL AKRRARR+VR LYYAMKVVGV AC YTSGLNATLVYMRPDFG + LVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWF LELASFVALQT+G MA+VLNVCL+EVLERSGALGKRR K RLRRGASGINSSSRG
Sbjct: 8 DRQERLAAKRRARRIVRVLYYAMKVVGVGACFYTSGLNATLVYMRPDFGRELLASSLLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFSLELASFVALQTVGVMALVLNVCLREVLERSGALGKRRGKKSASSSSR---RLRRGASGINSSSRG 186
BLAST of mRNA_E_fasciculatus_S2_contig9163.17231.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBH1_9PHAE) HSP 1 Score: 119 bits (298), Expect = 3.830e-31 Identity = 68/71 (95.77%), Postives = 69/71 (97.18%), Query Frame = 1
Query: 1 MSWAEPADMDTLSELPRQSGVGSSGRPPKLSRTASSVGRAAKSRGGSGGASKSERRLLMEAKAGVGAAIAE 213
MSWAEPADMDTLSELPRQS VGSSGRPPKLSRTASSVGR+AKSRGGS GASKSERRLLMEAKAGVGAAIAE
Sbjct: 1 MSWAEPADMDTLSELPRQSMVGSSGRPPKLSRTASSVGRSAKSRGGSRGASKSERRLLMEAKAGVGAAIAE 71
BLAST of mRNA_E_fasciculatus_S2_contig9163.17231.1 vs.
Match: Uncharacterized (protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSD9_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 2.510e-17 Identity = 64/162 (39.51%), Postives = 89/162 (54.94%), Query Frame = 1
Query: 202 AIAEDRQERLVAKRRARRLVRFLYYAMKVVGVAACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKANFRALQKWWFKAPFYVFMA-----WLCFDASLSRGTVWFPLELASFVALQTMGAMAVVLNVCLKEVLERSGALGKRRRGK 672
A+ E +E +A+RRAR V + Y+ +K VA V N ++ R + L++R VR YL+ F + +LAELDT FA+ NFRALQKWW KA FYVF+ W A L R L+LA+ L + V L CL+ +LE++ L K R+ K
Sbjct: 73 AMEEVAREAAIARRRARACVTYSYWVLKSTAVATHVLMITTNVWVLARRHEPDLRERAVRGYLIPFSLAALLAELDTRFARDNFRALQKWWCKALFYVFLGTVNLGWTPLGA-LGRPLT--RLQLATAGVLCALALGNVALYTCLRRLLEKT-VLRKLRKAK 230
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9163.17231.1 vs.
Analysis Date: 2022-09-19 ( Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 4
| Match Name | E-value | Identity | Description | |
|---|
| Uncharacterized | 2.270e-146 | 92.03 | protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... | [more] |
| Uncharacterized | 6.380e-94 | 83.52 | protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 131... | [more] |
| Uncharacterized | 3.830e-31 | 95.77 | protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... | [more] |
| Uncharacterized | 2.510e-17 | 39.51 | protein n=1 Tax=Tribonema minus TaxID=303371 RepID... | [more] |
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Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Stop | 0 |
| Start | 1 |
| Model size | 753 |
| Hectar predicted targeting category | other localisation |
| Exons | 4 |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-16_002950.1 |
| Cds size | 753 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842567.8564684-CDS-E_fasciculatus_S2_contig9163:225..481 | 1696842567.8564684-CDS-E_fasciculatus_S2_contig9163:225..481 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9163 226..481 - |
| 1696842567.868969-CDS-E_fasciculatus_S2_contig9163:1391..1527 | 1696842567.868969-CDS-E_fasciculatus_S2_contig9163:1391..1527 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9163 1392..1527 - |
| 1696842567.88528-CDS-E_fasciculatus_S2_contig9163:2037..2185 | 1696842567.88528-CDS-E_fasciculatus_S2_contig9163:2037..2185 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9163 2038..2185 - |
| 1696842567.897044-CDS-E_fasciculatus_S2_contig9163:3847..4060 | 1696842567.897044-CDS-E_fasciculatus_S2_contig9163:3847..4060 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig9163 3848..4060 - |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9163.17231.1 >prot_E_fasciculatus_S2_contig9163.17231.1 ID=prot_E_fasciculatus_S2_contig9163.17231.1|Name=mRNA_E_fasciculatus_S2_contig9163.17231.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=251bp
MSWAEPADMDTLSELPRQSGVGSSGRPPKLSRTASSVGRAAKSRGGSGGA
SKSERRLLMEAKAGVGAAIAEDRQERLVAKRRARRLVRFLYYAMKVVGVA
ACVYTSGLNATLVYMRPDFGLQDRLVRSYLVLFGVGGVLAELDTPFAKAN
FRALQKWWFKAPFYVFMAWLCFDASLSRGTVWFPLELASFVALQTMGAMA
VVLNVCLKEVLERSGALGKRRRGKKSASSSSAARRLRRGASGINSSSRGS
G back to topmRNA from alignment at E_fasciculatus_S2_contig9163:226..4060- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig9163.17231.1 ID=mRNA_E_fasciculatus_S2_contig9163.17231.1|Name=mRNA_E_fasciculatus_S2_contig9163.17231.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3835bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9163:226..4060- (Ectocarpus fasciculatus EfasUO2)
ATGTCATGGGCGGAGCCTGCGGACATGGACACTCTGAGCGAGCTGCCGAG
GCAGTCCGGCGTGGGTAGCAGCGGCAGGCCGCCCAAGCTGTCACGGACAG
CGTCCTCTGTCGGACGGGCTGCCAAGTCGAGAGGAGGGAGCGGAGGCGCG
TCGAAGTCGGAACGGAGGCTGCTGATGGAGGCCAAGGCTGGCGTTGGGGC
TGCCATAGCGGAGGTGTGGCGTAGGCCGTAGGAACGGCGGTGATTTTGTG
GCATGTTTGTGTTGAAAGGTGTGCGTGGGTTTGGCATCGTCTCCATCATG
CGGCACTACTTGTGTCCAGACTTCAAAGTCTTGACTTCACAACTGCTGGA
GGTTTGTAGCTCCCACAACACCAAGGTATGACAGCAGTGTTGACCCTCCG
AGAGAAGACGGAATGCGTCGTTCGTTTTCTTCTACTGCCGGCTTGTCGCT
CGCGTCCCTTTGTTTGCCCCATGGCTCTCAAACCCAGCACACCGCGATTT
CACGGACTATTTGTACCGGCTTGGGAGACGAACATTTTTGAATTGTTTGC
CTCCATGGTTGCCGCCGCCTCCAACGCCCGTAGCAGCAGCTGTGAGAGAA
CCGGTGTGTGAAGAAGAAGAAGACACAGCAGTGCTCGTATTTCCACGTCG
TAACTTCAACACCCCCACGACTGCTGTCAAAAGCGGCGTCACCCGTAGTT
TGTAGCGGCGTTGGAGTACTCCTCAGTTTGGCGGCCCTCTGGACGACACG
TTCAGCCTTCAATGGTTGAAGTCGCAAGGGAGTTGCAGCGGTCGGAGGCC
TCTATTGCGCCTCCTCCGTGGCGGCGGTACAGCAGTAGTGTTCATGGTTC
CTGCGGCGTGGTCGACGCGGGTGTCGGCGTCCTCTTTGAGCAGGCAGGTA
GGTGGTCCCTTTCGCAGCCTGCCGCGAGGAGACTGGCGGTGGCATCGCCG
ATGGCCGCCTGCTGTACCGGGATGCACGGCGGTTCACCCCCCGCGGGTAC
AGCAGTAGGTGGCCATCGCAGATGCCACCACCGCCAATACCCCCGTGGCC
GCTGCAGTCCACACAAGCTGAAAAAGGGGCCTGCTCAAGGATGAGGCCGC
CACCAGCGTGCCGCAGGGAATCATGAACACCACCTCCGCCGCGGAGGCAC
GCCTCCGACCGCCGCAACTCCCTTCGAATATTTGCGGCCGAACGTGTTCT
TCGAGGGCCGCTGTGACACCCACACTGGAAGCAATCCAAAGACGTCGCCG
CCCACGACGACTTGGACTTCTTGCCTGGACCCCCCAGCCACTCACCGCCT
AGGAGCCCACGCAGTAATCACGCCCGCCACTTTTAAAGCTGACGTCGTGT
ATAGTGAAAAGCTTTGTCCAGGCCGTAAGACAGCGAGGTTGCCTGCCCCC
CCTTGACTTGTTCCCAACCAATCACCTCAGTTCCGGCCTGCCGCCGGTGG
AAACGGTCAGGTAGCCTGCCCTTTCAACCCAAAAAGAGACCATTCCACTC
CCCCATTTGACGTTGGCGTGGAAAGTGCCTCTTTGTAGTCCTGTTCATTT
TTGTTTGCTTGTCGCCTGTTGCCAATACCCCGCTCATCGCGCGTGGACCA
TAAGGCTAGGCTTGCCATGCGTGCACGTATTCCCGCGGCTGTGGATTGCG
CAATGGGCAGTGGACGCGTACACCATTGCCTTGTTTTTCGTGCCCCACCC
GCCCACGGACGGTAGCACTTTTTCTCGAACTTCCGTCCAACGAGAAACGA
CGCGCTGCTGCTTTTTTCCGTTGCGCGCGTACGGCTGCCGCTTCGATAGA
GATACTTGTAGCAACGTATGCCAATATCGGACCGGCCTAACACGCTTGTC
CTTGGGGCGTTTCGTTGTTTCGCAGGACCGACAGGAGCGCTTGGTCGCGA
AGCGGCGGGCGAGGAGACTCGTCCGGTTTCTGTACTACGCCATGAAGGTG
GTCGGGGTGGCGGCGTGCGTCTACACCTCGGGGCTCAACGCGACACTCGT
CTACATGAGACCGGACTTCGGACGTGAGCTTCTGTGTCCTCCTTGTCCGT
ACGGCCGTGTGTGTGGTACCATGTACTTCGTACTTATTTGGTTTTGTTTT
TCGTGCGTGGAGGTTGTGTATACCGGTGTGTCGAAACACGTAACCTGTTT
GTTTGCTAGCACGTGTGCCGTTGAGGGTAACTTGCATGTTTTTCAACCTA
CAGTCGCGATGATTGAAAACAGGACGGGAGCTGCTGAAGTCTCTGGAAAG
AGAGGCTACCGTATCTCCTGTTTTCGACACGCGTGCTGCTCTCAAGGAGG
GAGAATAAACTGCGTGGTGTATAATAGTCCGGGGTGCTGCTGTTTCCGCG
GTTTCTGCGATACCTGCTGCTATGTACCCTTTTTCATTTACCCACATCAA
TCTTTCCGCACAGCCAGGCACCAACCTCTCACCGCTAAGTAATACGCGAA
AAAACGAAAAATATATATATCCTTGACAGATGCCGTCCGTTTTGGTTCTC
TGATGTCGCGTTGTATCTGTTCTGATGCGCCAGTCCAAGATAGGCTCGTC
CGGTCCTACCTGGTTTTGTTCGGCGTTGGAGGGGTGCTTGCGGAGCTGGA
CACCCCTTTCGCCAAGGCCAATTTCAGAGCGCTGCAGAAGTGGTGGTTCA
AGGCTCCGTTTTACGTGTTGTGAGTTATGGAAGCGGGGCGACAACTGGGG
AGTGTTAGAGTCTGCTCGTAGCGAATTTAAGTGTATGTTGAATCCTCTGT
TGCACGTGCATGAGGAGATCTCAACGGTCGTAGCAGACAGTGCAGACGAA
ATGGCCACAGCAAATAATTGTGGTCTGTCGACGAAAAGCAGATTCTTGGT
TTAGTTCGTGTGAATAAGAAGACCTTGCAGAAACTTTTGCTTCTCGTTTT
TATAAAGAAGTTCATTTATTAGCGTCTTTCGTAAGCCGTGAGTTAACGAA
GGACGTGATAGTAGTGACAAAGTGGTGAATATTGAATAGCCGTGACCACC
ACCTCTATGTAGCAGCAGTGATAATCCAGTCAGTTGCGGTGGACAGTACG
GTTCCTCTCCGCTCGAAATGCCGGTTCGTGTGACTGGTGACCGCAGCAGT
ACCCCGGTGGACATTCCAGGCACGCCCATCCCTCGATTGGGTTGAATCGT
GTGTGCTATGCTACGCTACGAAACCGACCATAACGCTGGCCAATCACCGT
CGCATATCGGCGTGACGTTTTGTTCGGGACGCTCTTGTTGGGGAGTGTGC
AAAGTTCCACTTTTTGGGTAGCGATAAGATTTTTTTTTGCTGAGTCCGTC
CGTCTCTCGAGCATACATTGAAGGCACATGCCACAGAGCAGTACCGTCGT
TGCGACCAACCGCGGACATGTGAGCTTCTCGGCACAACAGCAGAGAGGCA
AAAATACTGCGAGCGAAACGACGATACACCCAACTCCGACCTTTGCAAGA
ATAAGCTAAGCCAACACGCGTGCCTCCAAAACTGCTGCAATGTGTCTCCG
ATTTGTCCATCTTAGATACCACCACCCCCTCGTCTTTGTCCCGAACCCGT
AACTCTGGCCTCTACTCAACACCTCTCAGCATGGCCTGGCTCTGCTTCGA
CGCCAGCCTCTCCCGGGGGACCGTGTGGTTTCCCCTCGAGCTAGCCTCGT
TCGTCGCGCTCCAGACCATGGGCGCCATGGCTGTCGTGCTCAACGTCTGC
CTCAAGGAGGTGCTGGAGAGGAGCGGGGCTCTCGGAAAGCGGCGGCGCGG
CAAGAAATCCGCGTCGTCGTCGTCCGCGGCGCGACGGTTACGGCGAGGAG
CGAGCGGGATAAACTCTTCGTCCCGCGGATCAGGT back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig9163:226..4060- >mRNA_E_fasciculatus_S2_contig9163.17231.1 ID=mRNA_E_fasciculatus_S2_contig9163.17231.1|Name=mRNA_E_fasciculatus_S2_contig9163.17231.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=753bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9163:226..4060- (Ectocarpus fasciculatus EfasUO2)
ATGTCATGGGCGGAGCCTGCGGACATGGACACTCTGAGCGAGCTGCCGAG
GCAGTCCGGCGTGGGTAGCAGCGGCAGGCCGCCCAAGCTGTCACGGACAG
CGTCCTCTGTCGGACGGGCTGCCAAGTCGAGAGGAGGGAGCGGAGGCGCG
TCGAAGTCGGAACGGAGGCTGCTGATGGAGGCCAAGGCTGGCGTTGGGGC
TGCCATAGCGGAGGACCGACAGGAGCGCTTGGTCGCGAAGCGGCGGGCGA
GGAGACTCGTCCGGTTTCTGTACTACGCCATGAAGGTGGTCGGGGTGGCG
GCGTGCGTCTACACCTCGGGGCTCAACGCGACACTCGTCTACATGAGACC
GGACTTCGGACTCCAAGATAGGCTCGTCCGGTCCTACCTGGTTTTGTTCG
GCGTTGGAGGGGTGCTTGCGGAGCTGGACACCCCTTTCGCCAAGGCCAAT
TTCAGAGCGCTGCAGAAGTGGTGGTTCAAGGCTCCGTTTTACGTGTTCAT
GGCCTGGCTCTGCTTCGACGCCAGCCTCTCCCGGGGGACCGTGTGGTTTC
CCCTCGAGCTAGCCTCGTTCGTCGCGCTCCAGACCATGGGCGCCATGGCT
GTCGTGCTCAACGTCTGCCTCAAGGAGGTGCTGGAGAGGAGCGGGGCTCT
CGGAAAGCGGCGGCGCGGCAAGAAATCCGCGTCGTCGTCGTCCGCGGCGC
GACGGTTACGGCGAGGAGCGAGCGGGATAAACTCTTCGTCCCGCGGATCA
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