mRNA_E_fasciculatus_S2_contig9138.17210.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9138.17210.1
Unique NamemRNA_E_fasciculatus_S2_contig9138.17210.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9138.17210.1 vs.
Match: Spherulin (4 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D4_ECTSI)

HSP 1 Score: 175 bits (444), Expect = 7.630e-51
Identity = 83/86 (96.51%), Postives = 86/86 (100.00%), Query Frame = 1 
Query:    1 EARVVFNSGQAADEQYFAFSPPAEVVGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYV 258
            EARVVFN+GQAADEQYF+FSPPAEV+GYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYV
Sbjct:  122 EARVVFNTGQAADEQYFSFSPPAEVLGYENYFKAVRQLGVPETSDISTPPQNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYV 207
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BLAST of mRNA_E_fasciculatus_S2_contig9138.17210.1 vs.
Match: Mannuronan (C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LFB3_ECTSI)

HSP 1 Score: 64.7 bits (156), Expect = 3.120e-10
Identity = 31/89 (34.83%), Postives = 49/89 (55.06%), Query Frame = 1 
Query:   10 VVFNSGQAADEQYFAFSPPAEVVGYENYFKAVRQLGVPET-SDISTPPQNMLLLHSAT-----ELAEKPELIQPFVDKAYCKGWGTVYV 258
            V FN G   D  YFAFS    V+ YEN+++ ++ +G+P T S +  P Q+ L +H+ +        E   L++  V +A C GWG +Y+
Sbjct:  179 VTFNPGGGVDPAYFAFSGNPTVMSYENFYRVMKNVGMPRTPSSVLDPSQHALAVHTTSPDLDGNTEETRALVEAIVQEAACSGWGKIYL 267
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9138.17210.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Spherulin7.630e-5196.514 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G9D4_ECTSI[more]
Mannuronan3.120e-1034.83C-5 epimerase n=1 Tax=Ectocarpus siliculosus TaxID... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9138contigE_fasciculatus_S2_contig9138:4692..5672 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size262
Hectar predicted targeting categoryother localisation
Exons3
Cds size258
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842565.5454433-CDS-E_fasciculatus_S2_contig9138:4693..47501696842565.5454433-CDS-E_fasciculatus_S2_contig9138:4693..4750Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9138 4694..4750 -
1696842565.5550416-CDS-E_fasciculatus_S2_contig9138:4970..50701696842565.5550416-CDS-E_fasciculatus_S2_contig9138:4970..5070Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9138 4971..5070 -
1696842565.564528-CDS-E_fasciculatus_S2_contig9138:5571..56721696842565.564528-CDS-E_fasciculatus_S2_contig9138:5571..5672Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9138 5572..5672 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9138.17210.1prot_E_fasciculatus_S2_contig9138.17210.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9138 4694..5672 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9138.17210.1

>prot_E_fasciculatus_S2_contig9138.17210.1 ID=prot_E_fasciculatus_S2_contig9138.17210.1|Name=mRNA_E_fasciculatus_S2_contig9138.17210.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=86bp
EARVVFNSGQAADEQYFAFSPPAEVVGYENYFKAVRQLGVPETSDISTPP
QNMLLLHSATELAEKPELIQPFVDKAYCKGWGTVYV
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mRNA from alignment at E_fasciculatus_S2_contig9138:4692..5672-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9138.17210.1 ID=mRNA_E_fasciculatus_S2_contig9138.17210.1|Name=mRNA_E_fasciculatus_S2_contig9138.17210.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=981bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9138:4692..5672- (Ectocarpus fasciculatus EfasUO2)
GAAGCCCGCGTCGTCTTCAACAGCGGGCAGGCAGCGGACGAGCAGTACTT
TGCCTTCTCGCCCCCCGCTGAGGTCGTCGGCTACGAGAACTACTTCAAGG
CGTGAGTTGGCGGGGTCCACCCGCACGGTTGGGGGGGCGGGGGGGGGGGG
GCCAGAGCGGAAGAGCACCCGGCTGGACTCCCGGCCCCCCGAAACATCCT
ATCCCCGCCTCCGCTTGAAAAAAAAAAAACAAAAGACCGGACCCNNNNNN
NNNNGCGGCGGGGGGGGGGGGGGGGGGGGGGGGGGTGGGGTGGGGGGGGG
GGGGGGGGGGGGCGCGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGCGACTCTCGTCGTTCGTTTTTAGTTTGCCCAGTGGTTGTTTGTTGCCT
CGATTGTTTGGTCCTGTCGCTGCTGCTGCTGCTCCTGCTTGACGCGTGTC
TCTCTTGTGGCAAGCAGGCCGCTCCACGAGCTAGCTGCACTCACGCCTTC
GTGTTGGTAAAAGGCGGGGTTTCCATGAGCTCGTGCGCGTGATGCTCCGA
AAACTCTGACCGTCCGTATGCTTGTACTTGATGCTTCCTTTGTTTTTTGC
AGCGTGAGGCAGCTCGGAGTGCCCGAAACCAGCGACATCTCCACGCCGCC
CCAGAACATGCTTCTCCTGCACAGCGCCACCGAGCTGGCCGAGAAGCCTG
AGGTACGCCTGCGATTGGACTAACTGAAGGTCGTAATACGGTTCCTTTCT
CGTCTCTTCTTGTCTTGTCACAATTGATAATCTACTGCACCTTGTATGCT
CTTCCCCTGCCTCCTCTCTTTTCGTGTCCCATCACAAACTTCCCCCCCCC
CTCCGCGCTTCCCCGTCGCCACCGCCTCCTTGCTCGTTCTCTCTCCGGCC
GTCAATCACCACAACATGACAGCTGATCCAACCCTTCGTGGACAAGGCCT
ACTGCAAGGGCTGGGGCACGGTGTACGTGAC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9138:4692..5672-

>mRNA_E_fasciculatus_S2_contig9138.17210.1 ID=mRNA_E_fasciculatus_S2_contig9138.17210.1|Name=mRNA_E_fasciculatus_S2_contig9138.17210.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=258bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9138:4692..5672- (Ectocarpus fasciculatus EfasUO2)
GAAGCCCGCGTCGTCTTCAACAGCGGGCAGGCAGCGGACGAGCAGTACTT
TGCCTTCTCGCCCCCCGCTGAGGTCGTCGGCTACGAGAACTACTTCAAGG
CCGTGAGGCAGCTCGGAGTGCCCGAAACCAGCGACATCTCCACGCCGCCC
CAGAACATGCTTCTCCTGCACAGCGCCACCGAGCTGGCCGAGAAGCCTGA
GCTGATCCAACCCTTCGTGGACAAGGCCTACTGCAAGGGCTGGGGCACGG
TGTACGTG
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