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Homology
BLAST of mRNA_E_fasciculatus_S2_contig913.17201.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FPE6_ECTSI) HSP 1 Score: 293 bits (751), Expect = 1.710e-87 Identity = 228/295 (77.29%), Postives = 231/295 (78.31%), Query Frame = 1
Query: 1 ALAERRSREASEQAANRFRAAQQVEERVRSETDKEGSTLRESLSRLEAEVERLRLEGERAGSSXXXXXXXXXXXXXXXXXXXSRVLREKEALRERVAALQSAADRSEEAAEGAGRDXXXXXXXXXXXXXXXXXXXXGLAEVEGENEGLRERLRMAEEELAGLVAEADQAREAHVSALKDIRRAAGAERDSHVARVRYELETLRRRARXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSRASALALAAAGGVGGGAPVVPLRGGGLGEPVGGRGGEMMTGRTPMDCTSSTFGAV 885
ALAERRSREASEQAANRFRAAQQVEERVRSET KE S LRESLS+LEAEVERLRLEGER GSS XXXXXXXXXXXXXXXXX LREKEALRERVAALQSAADRSEEAAEGAGR+ XXXXXXXXXXXXXXX LAEVEGENEGLRERLRMAEEELAGLVAEADQAREAHVSALKDIRRAAGAERDSHVARVRYELE+LRRRA SRASALAL AP PL GGGLGEP GGRG E M GRTPMDCTSSTFGAV
Sbjct: 365 ALAERRSREASEQAANRFRAAQQVEERVRSETGKETSALRESLSQLEAEVERLRLEGERVGSSAQXXXXXXXXXXXXXXXXXXXXLREKEALRERVAALQSAADRSEEAAEGAGRERDEAXXXXXXXXXXXXXXXECLAEVEGENEGLRERLRMAEEELAGLVAEADQAREAHVSALKDIRRAAGAERDSHVARVRYELESLRRRAHRSVRKERKRSRAYKAQAIEAHQRGQRTRQVLQSRASALALXXXXXXXXRAPAAPLTGGGLGEPAGGRGRERMIGRTPMDCTSSTFGAV 659
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Stop | 1 |
| Start | 1 |
| Seed ortholog score | 213.8 |
| Seed ortholog evalue | 1.3e-52 |
| Seed eggNOG ortholog | 2880.D7FPE6 |
| Model size | 1643 |
| Hectar predicted targeting category | other localisation |
| Exons | 5 |
| EggNOG OGs | 28NMX@1,2QV7M@2759 |
| Cds size | 1005 |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842564.689795-UTR-E_fasciculatus_S2_contig913:157..367 | 1696842564.689795-UTR-E_fasciculatus_S2_contig913:157..367 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig913 158..367 + |
| 1696842564.7550194-UTR-E_fasciculatus_S2_contig913:4485..4913 | 1696842564.7550194-UTR-E_fasciculatus_S2_contig913:4485..4913 | Ectocarpus fasciculatus EfasUO2 | UTR | E_fasciculatus_S2_contig913 4486..4913 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1696842564.7007875-CDS-E_fasciculatus_S2_contig913:367..372 | 1696842564.7007875-CDS-E_fasciculatus_S2_contig913:367..372 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig913 368..372 + |
| 1696842564.7112622-CDS-E_fasciculatus_S2_contig913:793..1082 | 1696842564.7112622-CDS-E_fasciculatus_S2_contig913:793..1082 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig913 794..1082 + |
| 1696842564.7220206-CDS-E_fasciculatus_S2_contig913:2433..2811 | 1696842564.7220206-CDS-E_fasciculatus_S2_contig913:2433..2811 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig913 2434..2811 + |
| 1696842564.7318974-CDS-E_fasciculatus_S2_contig913:3660..3937 | 1696842564.7318974-CDS-E_fasciculatus_S2_contig913:3660..3937 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig913 3661..3937 + |
| 1696842564.7457025-CDS-E_fasciculatus_S2_contig913:4429..4485 | 1696842564.7457025-CDS-E_fasciculatus_S2_contig913:4429..4485 | Ectocarpus fasciculatus EfasUO2 | CDS | E_fasciculatus_S2_contig913 4430..4485 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig913.17201.1 >prot_E_fasciculatus_S2_contig913.17201.1 ID=prot_E_fasciculatus_S2_contig913.17201.1|Name=mRNA_E_fasciculatus_S2_contig913.17201.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=335bp
MRGESERAKSEASRVLREKEALRERVAALQSAADRSEEAAEGAGRDRDEA
RAAAAAATQRAQREREGLAEVEGENEGLRERLRMAEEELAGLVAEADQAR
EAHVSALKDIRRAAGAERDSHVARVRYELETLRRRARRSVRKERKRSRAY
KAQAIEAHQRGQRTRQVLQSRASALALAAAGGVGGGAPVVPLRGGGLGEP
VGGRGGEMMTGRTPMDCTSSTFGAVFDGLPSDAVKTMEALELSQALQRVR
SSRRRRKEEGGGGGGGGRREGRKPRNQNDTAERPSGSSSKEGEAVRGKAG
LGGEGSEEDGSGLLGRGSDGKFEVPLAVAKPAEV* back to topmRNA from alignment at E_fasciculatus_S2_contig913:158..4913+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_E_fasciculatus_S2_contig913.17201.1 ID=mRNA_E_fasciculatus_S2_contig913.17201.1|Name=mRNA_E_fasciculatus_S2_contig913.17201.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4756bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig913:158..4913+ (Ectocarpus fasciculatus EfasUO2)
GCATTGGCGGAGCGGCGGTCTCGCGAGGCGTCCGAACAAGCGGCCAACCG
TTTCCGGGCGGCGCAGCAGGTGGAGGAGAGAGTGCGGAGTGAGACCGATA
AGGAAGGGAGCACCCTACGGGAAAGCTTGTCGCGGCTGGAGGCGGAGGTG
GAAAGGTTGAGGCTCGAAGGGGAGAGGGCCGGCTCGTCCGCCCAGCAGGA
CATCCAGAAGATGCGGTGAGACGAGACGAAAGGAGAGGACGCACACGGGC
GCGTTGCACCACTCGCTCTCCATATATTTATCTTTCTCTCTCCACCTCTC
TTTCTTTCTCTGTCTTTTTCTCTCTGTCGGTGTCTCCCGCTGTGTGTGTG
TCTCTCTCTCTGTCTCTCCGTGTTGGCTTGCGTCTGTTTGTCGTATCGCA
ACGCATGATGGTTTGGGTTGCTCGTGTTCCTCCTTCGTCTCTAGATTATT
CTCTCGCGTTTCGGATGTTGGGTGGGTGGTGTCTGGCGTCAGAGGGCGGA
GGCGAGGGGAGGCACACAGACCAGCTTCAAGCTGCCTCCTCATACCCTTG
CCTCTCGGCAGCAAGCAGCCTCCCGAAACCTCCCACCCACCGCCCCCTCG
TTGCCCCGACCTCTCCGAAATACCCTCTTTCGCAAGGGGAGAGTCGGAAC
GAGCGAAGTCGGAAGCCTCTCGGGTTCTCCGCGAGAAGGAGGCACTACGA
GAGCGGGTGGCGGCGCTCCAGTCGGCCGCCGACCGATCCGAGGAGGCCGC
CGAGGGTGCGGGACGCGACCGAGACGAGGCCAGGGCGGCGGCGGCGGCGG
CGACTCAGCGGGCGCAGCGGGAGCGGGAGGGCCTGGCAGAGGTGGAGGGG
GAGAACGAGGGGCTACGGGAGAGGCTGAGGATGGCCGAGGAGGAGCTGGC
GGGGTTGGTCGCCGAAGCGGACCAGGTCTGTCTGTCTATTTGTCTGTCTG
TCTGTCTGTTGTTTGTCTGTCTGTCTGTTGTTTGTCTGGCTGTCTGTCTG
GCTGTCTGTCTGTCTGGCTGGCTGGCTGGCTGGCTGGCTGGCTGACTGGT
TGTGTGTTTGTCAGTCAGTCTGTCTGTTTGTCTGTCTTTTCAGTCTGGCT
GTCTGGCTGTCTGGCTGTCTGGCTGTCTAGCTGGCAGTCTGGCTGACTGA
GTGGGAGAGAGACTGGCTGGCTGGCTAGCTGGCTGGCAGGCAGGCTGTCT
GGCTGTGTCGCCTGTTCGCGCGTTGTGCTTGCGTGGTTCTTGGTTGGTGT
TGGTGTTATGGCCGCGGAAACAGGCTCACCGAATGAGCAAAACTCCGTTG
TGTGTGCGTGCGTGCGTGCGTGCGTACGCGTCCGTTCGTCAGCAAAGAAC
AAGCAGCACAGCTTTAATCCCCACCCCGGCCTTAATTATTGTGCTACCTC
GAAGGGGATCGATCGATGCGGCAGATCGAAAAATCGTCCCGAAGATCTCC
AATCGAGAGTTGTTTGTCTCGCAGATTGATGAAATCCTGCGCGTAGTGCT
CTCCTCTTCTCTCGCAGCGAGTCAGCATGGAAGTACGTATTTCACACGGG
GCGTGAGGTGAATAGGGCTTGCCTTATCGGGGCGCGCGCGGTGGGGTGGT
GTCCGTCCGCTTCTGTGTTTTCCGTGACATCCAAGGGTTCCTTGCTCGTT
GTTTGATGACGGCCCATTGGCGTTTTATGTTGCACTACGGCCGGCTCTCT
GCCTCTTTCTGGAAGACGTAGGTGGTATAGCAGGCCCTCCACTCTTGGCT
AAAAACGGTCGGCCGCGTAGGGACTGTTTGGCATCACGACGCACTCCGTG
GTGTGCCCTGCGCTCGCTCCGCGGCGTCCATGTCCACAACATCAGACGGG
GGGGGGGGGGGGGCAACCGCCGAAAATCACGTTTGGTCATGTGTCTGCTA
TTTTTAGCTTTGGCTGGCTCTTGTCATTCCACCATCAAGTTCGGCGCGCC
CCGTNNNNNNNNNNGGCTTGGCGGCGGCGCGTGTGGCTTCCTGCTCCCCC
CCCCGCCTGTGCGCCGCGCCCCGCCGGGCCCCCCCCCGCGCTCGCCAGGC
GCGGAAGGGGGGGGGGGGGGGGGGGGGGGGCGCAACCGCCGAAGATCACG
TTTGGTCATGTGTCTGCTATTTTGAGCTATGGCTGGCTCTCGTCATTCAC
GCATCAAGTTCGGCGCGACCCGTATCCGCCTTGCACACGTACGCACCCTT
AACCCACCCCCTCTGTCCGCGGTACCCCCACCTCCTTGGACACAACAACG
ACAACGACAACGACAACCAAAAACAGGCCCGAGAGGCGCACGTGAGCGCC
CTCAAGGACATCCGTCGCGCCGCCGGGGCCGAGCGGGACTCGCACGTCGC
GCGCGTGCGGTATGAGCTGGAAACCCTGAGGAGGCGCGCCCGCCGGTCCG
TTCGGAAAGAGAGGAAGCGGAGCCGGGCGTACAAGGCGCAGGCCATCGAG
GCCCACCAGAGGGGGCAGAGGACGCGGCAGGTTCTCCAGTCTCGTGCGTC
GGCATTGGCGTTGGCGGCCGCGGGGGGGGTGGGAGGGGGGGCACCGGTGG
TGCCGTTGAGAGGGGGGGGGCTTGGGGAGCCCGTGGGAGGACGAGGAGGG
GAAATGATGACAGGGAGGACGCCCATGGATTGCACGTCGTCTACGTTTGG
CGCGGTAGGTTGCGTTTTGCTTGACCCTTGGTTTTTGGGGGATGGTGATC
CTGAACGTGGTGTCGGGGAGTCTCTCGACGGGGCACAGCAACTTCCATAT
CTTTTCTCGGGATAGTGTGTGCTGTTTTGGTCGTCTAGGCTCCAGGCGAG
ATTGGTCGGGCCGTGAGCGTTGTTTGTGGCGCGCCTTGGCGCTAGTGCAA
GCGGCGTCGTGATGGGGATGACCCACCGTGAATGCGGGTGAAAACAGATC
GACCAAAGTAAGGGTGGCATCGAAGAACGTGAAGCACGCCTCGCTCTCTG
AGCACACTTCGGGGCGTTAGAGTGAGACAGAAATATTGCTGCTGCTGCTG
CTGTGTGTGTGTCGGCATGCACGCACACACTCAACAATGGCATTGATGGT
AGTGATGGTGGTGGTAGTGTACGCAAGGAGGGTGGTGATGAAGGCACTCC
GAACGCACTCGAGTGCAAGGTAGCAGCCGTGGTAGACACGCACCTTCTTC
TGTTGCTACCGCTTCTGTCTTTAATCCGGAGAATAGCATAGGCTCCCCTT
GGCAGCCCGTTCGCGGGGTCCCAGTTCATGGCATTTAGAAGTGTGTTTTC
AACCGCTCTGAGACTGATGTCTGTTCATTGGTGAGCCGGTTAGCGCGGTC
GATGCTAGGAATAAAGACACACACACACACACGTTGTATGACCCCGCTCG
GAACGCAGGCCCTGCCTCAACCAGCTCCCACCCTCCCCCCGCCTGTAGCT
TAATGCCAGTTTCTCACGCTCCTCCCTTCGTTCCTTCGTTCCTTCCTTCC
TTCCTTCCTTCCTTTGTCGTGGTGGTCACTTGGTGTTCTTGCTGCTGTTC
CAGGTGTTCGACGGTCTGCCGAGTGACGCGGTCAAGACGATGGAAGCGCT
TGAGCTGAGCCAAGCTCTCCAGAGAGTCCGCTCCTCGCGCCGGAGGCGAA
AAGAAGAAGGCGGCGGAGGCGGCGGCGGAGGCAGGCGCGAGGGTCGCAAG
CCTCGCAACCAGAACGATACCGCCGAACGACCGTCGGGGTCTTCTAGCAA
AGAAGGAGAGGCAGTGAGAGGAAAAGCGGGACTGGGGGGGGAAGGGAGCG
AGGAGGACGGATCAGGGCTGCTCGGGCGAGGTGAAACTTGACAAAAATCC
TGGAAAAGGGGGGGCACCCAACACATCTGTAGCTGTGACGCTGTCTGCGA
CGCGCTTGCTGTGTCGAGAATGCTGACTATTCTTGTCCCCGAGAGGCTGT
TTTGCGCTGCTCTGTTTCGTCACAGATCGCCCCGGTCTCGATCCCGTGAG
GAGGAGCGTACGGAAAGGCGAACATTTTGGATGTGTAGCTGTTTCCCACC
CCCCTGATCAAGAGAGTAAACAAACCCCTATGCTAACAGTGCACGCTGCT
AAGCCTACCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCACAA
CGCAACCGCAAGAAAGGGAGAGCTTTTTTGTTCTCAAAAAAACACGAGGG
TGGTGAAAAACACACACACAANNNNNNNNNNGATAAAAAAAAAAAAAAAA
CCCCCAGGCTAACCGCGCACGCTGCTAAGCCCCCCCCCCCCCCCCCCCCC
CCCGCCCAACACCTCCCGACAGGAAGCGACGGCAAGTTTGAGGTACCTTT
GGCAGTCGCAAAGCCAGCTGAGGTTTGAGACAACTCAGCACTAGGATGCC
CTGTCGCAAGTGGAAGCCCAAACACGCCACTTTTGGATGCAGAATTGCCG
AGGGAGAGGTTGGCTAACGGTCGAGGCTCTTATTCTCTTTGGCGCTCCAC
AACAGATACCCGTAACCTAGACCTCGCTTCCTCCGCGCGCGGGCTTCGCG
AGCTGTGTTTGTTGGGGGAGAGCTGGAGCTGATCAAGTATTGAGACGAAG
CTTCGCTGTGGTTGGTTGTCGGCATCCTCGCAGATGTTTTTCTATATATT
CGAGCCTGGCTCTCCTCCGTCCATTGGCTATTTATTGTTATACGGGGCGT
TGTGGTGAGATTGTTGAGCGATTTATCACCGTTCAGATAAGTCGTGAGGT
GATGAGTACGACTGGTACTATCGCCGTTTGGGCGAGCCTTCCAGTGCATG
CAGGTG back to topCoding sequence (CDS) from alignment at E_fasciculatus_S2_contig913:158..4913+ >mRNA_E_fasciculatus_S2_contig913.17201.1 ID=mRNA_E_fasciculatus_S2_contig913.17201.1|Name=mRNA_E_fasciculatus_S2_contig913.17201.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1005bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig913:158..4913+ (Ectocarpus fasciculatus EfasUO2)
ATGCGGGGAGAGTCGGAACGAGCGAAGTCGGAAGCCTCTCGGGTTCTCCG
CGAGAAGGAGGCACTACGAGAGCGGGTGGCGGCGCTCCAGTCGGCCGCCG
ACCGATCCGAGGAGGCCGCCGAGGGTGCGGGACGCGACCGAGACGAGGCC
AGGGCGGCGGCGGCGGCGGCGACTCAGCGGGCGCAGCGGGAGCGGGAGGG
CCTGGCAGAGGTGGAGGGGGAGAACGAGGGGCTACGGGAGAGGCTGAGGA
TGGCCGAGGAGGAGCTGGCGGGGTTGGTCGCCGAAGCGGACCAGGCCCGA
GAGGCGCACGTGAGCGCCCTCAAGGACATCCGTCGCGCCGCCGGGGCCGA
GCGGGACTCGCACGTCGCGCGCGTGCGGTATGAGCTGGAAACCCTGAGGA
GGCGCGCCCGCCGGTCCGTTCGGAAAGAGAGGAAGCGGAGCCGGGCGTAC
AAGGCGCAGGCCATCGAGGCCCACCAGAGGGGGCAGAGGACGCGGCAGGT
TCTCCAGTCTCGTGCGTCGGCATTGGCGTTGGCGGCCGCGGGGGGGGTGG
GAGGGGGGGCACCGGTGGTGCCGTTGAGAGGGGGGGGGCTTGGGGAGCCC
GTGGGAGGACGAGGAGGGGAAATGATGACAGGGAGGACGCCCATGGATTG
CACGTCGTCTACGTTTGGCGCGGTGTTCGACGGTCTGCCGAGTGACGCGG
TCAAGACGATGGAAGCGCTTGAGCTGAGCCAAGCTCTCCAGAGAGTCCGC
TCCTCGCGCCGGAGGCGAAAAGAAGAAGGCGGCGGAGGCGGCGGCGGAGG
CAGGCGCGAGGGTCGCAAGCCTCGCAACCAGAACGATACCGCCGAACGAC
CGTCGGGGTCTTCTAGCAAAGAAGGAGAGGCAGTGAGAGGAAAAGCGGGA
CTGGGGGGGGAAGGGAGCGAGGAGGACGGATCAGGGCTGCTCGGGCGAGG
AAGCGACGGCAAGTTTGAGGTACCTTTGGCAGTCGCAAAGCCAGCTGAGG
TTTGA back to top
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