mRNA_E_fasciculatus_S2_contig9128.17200.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9128.17200.1
Unique NamemRNA_E_fasciculatus_S2_contig9128.17200.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9128.17200.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JU45_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.750e-44
Identity = 81/111 (72.97%), Postives = 88/111 (79.28%), Query Frame = 1 
Query:  106 CWCGAEGADYDANGASYACTSACTGDADEVCGGSNAMSVYENGADDGEPMEFSCSGDAGVSSSTSCCEADCVTCGGTGCGTRAPGAASCCNSWIQSSGVFCSDFRAAPCIL 438
            CWCGAEGADYDANGA   C   C GDADE+CGG  A+SVYEN   DGEP+EFSCSGDAGVSS +SCCEADC TCGG+GC +R  GAASCC S IQS+G  CSD  AAPCIL
Sbjct:  153 CWCGAEGADYDANGAGV-CDMPCGGDADEICGGFYAISVYEN---DGEPVEFSCSGDAGVSSGSSCCEADCDTCGGSGCSSRGSGAASCCTSSIQSAGTLCSDSGAAPCIL 259
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BLAST of mRNA_E_fasciculatus_S2_contig9128.17200.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQV8_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 3.030e-40
Identity = 78/111 (70.27%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:  106 CWCGAEGADYDANGASYACTSACTGDADEVCGGSNAMSVYENGADDGEPMEFSCSGDAGVSSSTSCCEADCVTCGGTGCGTRAPGAASCCNSWIQSSGVFCSDFRAAPCIL 438
            CWCGAEGADYDANGA   C   C GDADE+CGG  AMSVYENGADDG P EFSCSGDAGVSS +SCCEADC         +R  GAASCC S IQS+G+ CSD  AAPCIL
Sbjct:  210 CWCGAEGADYDANGAGV-CDMPCGGDADEICGGFYAMSVYENGADDGVPDEFSCSGDAGVSSGSSCCEADCXXXXXXXXSSRGSGAASCCTSNIQSAGILCSDSGAAPCIL 319
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9128.17200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K646_9PHAE)

HSP 1 Score: 151 bits (382), Expect = 8.480e-39
Identity = 78/111 (70.27%), Postives = 83/111 (74.77%), Query Frame = 1 
Query:  106 CWCGAEGADYDANGASYACTSACTGDADEVCGGSNAMSVYENGADDGEPMEFSCSGDAGVSSSTSCCEADCVTCGGTGCGTRAPGAASCCNSWIQSSGVFCSDFRAAPCIL 438
            CWCGAEGADYDANGA   C   C GDADE+CGG  AMSVYENGADDG P EFSCSGDAGVSS +SCCEADC         +R  GAASCC S IQS+G+ CSD  AAPCIL
Sbjct:  380 CWCGAEGADYDANGAGV-CDMPCGGDADEICGGFYAMSVYENGADDGVPDEFSCSGDAGVSSGSSCCEADCXXXXXXXXSSRGSGAASCCTSNIQSAGILCSDSGAAPCIL 489
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9128.17200.1 vs.
Match: WSC (domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JW06_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.600e-31
Identity = 70/111 (63.06%), Postives = 75/111 (67.57%), Query Frame = 1 
Query:  106 CWCGAEGADYDANGASYACTSACTGDADEVCGGSNAMSVYENGADDGEPMEFSCSGDAGVSSSTSCCEADCVTCGGTGCGTRAPGAASCCNSWIQSSGVFCSDFRAAPCIL 438
            CWCGAEGADYDANG    C   C+GD +E+CGG  AMSVYEN ADDG P EFSCSGDAGVS  TSCCE             R  GAASCC S IQ++G  CSD  AAPCIL
Sbjct:  243 CWCGAEGADYDANGEGI-CDIPCSGDVNEICGGFYAMSVYEN-ADDGVPNEFSCSGDAGVSFGTSCCEXXXXXXXXXXXSMRGSGAASCCTSSIQAAGTLCSDSGAAPCIL 351
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9128.17200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX48_9PHAE)

HSP 1 Score: 59.3 bits (142), Expect = 3.260e-6
Identity = 32/70 (45.71%), Postives = 41/70 (58.57%), Query Frame = 1 
Query:  106 CWCGAEGADYDANGASYACTSACTGDADEVCGGSNAMSVYENGADDGEPMEFSCSGDAGVSSSTSCCEAD 315
            CWCG+ GADY  +G S  CT AC+GDAD+ CGG +A +VY   A+ G P       +AG   +  C E D
Sbjct:  517 CWCGSAGADYAVHGESTICTYACSGDADQTCGGYDAANVYRYTAE-GTPSPTPSPTEAGSHLALGCYEDD 585
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BLAST of mRNA_E_fasciculatus_S2_contig9128.17200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LEL0_ECTSI)

HSP 1 Score: 58.2 bits (139), Expect = 3.590e-6
Identity = 27/49 (55.10%), Postives = 33/49 (67.35%), Query Frame = 1 
Query:  106 CWCGAEGADYDANGASYACTSACTGDADEVCGGSNAMSVYENGADDGEP 252
            CWCG+ GADY  +G S  CT AC+GDAD+ CGG +A +VY    DD  P
Sbjct:   34 CWCGSVGADYTVHGESTDCTYACSGDADQTCGGFDAANVYRY-TDDSTP 81
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9128.17200.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE)

HSP 1 Score: 56.2 bits (134), Expect = 2.310e-5
Identity = 30/57 (52.63%), Postives = 35/57 (61.40%), Query Frame = 1 
Query:  106 CWCGAEGADYDANGASYACTSACTGDADEVCGGSNAMSVYENGADDGEPMEFSCSGD 276
            CWCG   A+YD NG    C  AC+GD+ EVCGGS AMSVYEN   + +P    C  D
Sbjct:  180 CWCG-NNAEYDVNGVGV-CDMACSGDSREVCGGSYAMSVYENDNVEVDPSYRGCFAD 234
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9128.17200.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
WSC1.750e-4472.97domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
WSC3.030e-4070.27domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized8.480e-3970.27protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
WSC2.600e-3163.06domain-containing protein n=1 Tax=Ectocarpus sp. C... [more]
Uncharacterized3.260e-645.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.590e-655.10protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.310e-552.63protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9128contigE_fasciculatus_S2_contig9128:3375..4249 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size875
Hectar predicted targeting categoryother localisation
Exons1
Cds size510
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842564.62171-UTR-E_fasciculatus_S2_contig9128:3374..33881696842564.62171-UTR-E_fasciculatus_S2_contig9128:3374..3388Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9128 3375..3388 +
1696842564.6584456-UTR-E_fasciculatus_S2_contig9128:3898..42491696842564.6584456-UTR-E_fasciculatus_S2_contig9128:3898..4249Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9128 3899..4249 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842564.6441264-CDS-E_fasciculatus_S2_contig9128:3388..38981696842564.6441264-CDS-E_fasciculatus_S2_contig9128:3388..3898Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9128 3389..3898 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9128.17200.1prot_E_fasciculatus_S2_contig9128.17200.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9128 3389..3898 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9128.17200.1

>prot_E_fasciculatus_S2_contig9128.17200.1 ID=prot_E_fasciculatus_S2_contig9128.17200.1|Name=mRNA_E_fasciculatus_S2_contig9128.17200.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=170bp
MYASKNRRKTTLPAPSPLPTAVPSLLPPTLVLVRRRRRRLRCQRCQLRLH
QRLHGRRRRGLRGLQRHVGLRERRGRRGTHGVLVLRRRRCVVQHFLLRSR
LRHLRRHGLRHPRPRRRFVLQLVDPVLWRLLLRLQGRPVHPLSSLPSLLG
EPCSGFEARLLSVCWTKTV*
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mRNA from alignment at E_fasciculatus_S2_contig9128:3375..4249+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9128.17200.1 ID=mRNA_E_fasciculatus_S2_contig9128.17200.1|Name=mRNA_E_fasciculatus_S2_contig9128.17200.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=875bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9128:3375..4249+ (Ectocarpus fasciculatus EfasUO2)
CTATTACAATCAATATGTACGCTTCGAAGAATCGACGTAAGACCACCCTC
CCTGCACCTTCTCCGCTCCCCACGGCTGTCCCGTCTCTTCTTCCTCCAAC
ATTAGTGCTGGTGCGGCGCCGAAGGCGCCGACTACGATGCCAACGGTGCC
AGCTACGCCTGCACCAGCGCCTGCACGGGCGACGCCGACGAGGTCTGCGG
GGGCTCCAACGCCATGTCGGTCTACGAGAACGGCGCGGACGACGGGGAAC
CCATGGAGTTCTCGTGCTCCGGCGACGCCGGTGTGTCGTCCAGCACTTCC
TGCTGCGAAGCCGACTGCGTCACTTGCGGAGGCACGGGTTGCGGCACCCG
CGCCCCCGGCGCCGCTTCGTGCTGCAACTCGTGGATCCAGTCCTCTGGCG
TCTTTTGCTCCGACTTCAGGGCCGCCCCGTGCATCCTCTAAGCTCTCTTC
CCTCGCTGTTAGGTGAGCCCTGCTCCGGATTCGAAGCGCGTCTTTTGAGT
GTTTGTTGGACAAAAACAGTTTGAAATGACGCATGGGTACGCACACGTAG
GTATTCAGGTGTTTGATGCCGCGTGTGTATTTTCGAACTGATCATTCGGA
CGTTCGTCCGCGCCCCAGCGTGCGAAGCTTGAGGTGTTGCATTTTCTCTC
CTGGCGACCTCCCTTTTATTTACCACCAGAAGTTCGTATTGGCAAAACCT
ATCGACCACTTTTGGTGTGGTCTTCTATTTCCCTGGGTCGCGAACTACTA
GAAGTCAGAGCAAATGGACATTGTTTCTTCTTTAGAAATATCTGGTATAG
ATCGACGAACCGCCGATGTTGTCGTGGAATCCGTGGTTGTAACTACTTCC
CTTCCTCTCTGGCAACGGACGTTTT
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9128:3375..4249+

>mRNA_E_fasciculatus_S2_contig9128.17200.1 ID=mRNA_E_fasciculatus_S2_contig9128.17200.1|Name=mRNA_E_fasciculatus_S2_contig9128.17200.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=510bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9128:3375..4249+ (Ectocarpus fasciculatus EfasUO2)
ATGTACGCTTCGAAGAATCGACGTAAGACCACCCTCCCTGCACCTTCTCC
GCTCCCCACGGCTGTCCCGTCTCTTCTTCCTCCAACATTAGTGCTGGTGC
GGCGCCGAAGGCGCCGACTACGATGCCAACGGTGCCAGCTACGCCTGCAC
CAGCGCCTGCACGGGCGACGCCGACGAGGTCTGCGGGGGCTCCAACGCCA
TGTCGGTCTACGAGAACGGCGCGGACGACGGGGAACCCATGGAGTTCTCG
TGCTCCGGCGACGCCGGTGTGTCGTCCAGCACTTCCTGCTGCGAAGCCGA
CTGCGTCACTTGCGGAGGCACGGGTTGCGGCACCCGCGCCCCCGGCGCCG
CTTCGTGCTGCAACTCGTGGATCCAGTCCTCTGGCGTCTTTTGCTCCGAC
TTCAGGGCCGCCCCGTGCATCCTCTAAGCTCTCTTCCCTCGCTGTTAGGT
GAGCCCTGCTCCGGATTCGAAGCGCGTCTTTTGAGTGTTTGTTGGACAAA
AACAGTTTGA
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