mRNA_E_fasciculatus_S2_contig911.17190.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	mRNA_E_fasciculatus_S2_contig911.17190.1
Unique Name	mRNA_E_fasciculatus_S2_contig911.17190.1
Type	mRNA
Organism	Ectocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)

Homology

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BLAST of mRNA_E_fasciculatus_S2_contig911.17190.1 vs.
Match: Uncharacterized (protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH3_ECTSI)

HSP 1 Score: 347 bits (891), Expect = 7.520e-121
Identity = 174/180 (96.67%), Postives = 178/180 (98.89%), Query Frame = 1

Query:    1 MPADSLPRDDEGSETPVFKRRKTAASPLLATPARVLNQIQNGDTLDTGRVLQALCNAVISSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGSPLYQACALDLPSTAKALLDHGASVVQVYKGQTPLQAALAQKDSRCVKVIMEHIEKLETQAREGRGGRGPRRSNHGSQCER 540
            MP++SLPRDDEGSETPVFKRRKTAASPLLATPARVL+QIQNGDTLDTGRVLQALCNAVISSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGSPLYQACALDLP TAKALLDHGASVVQVYKGQTPLQAALAQK SRCVKVIMEHIEKLETQAREGRGG+GPRRSNHGSQCER
Sbjct:    1 MPSESLPRDDEGSETPVFKRRKTAASPLLATPARVLSQIQNGDTLDTGRVLQALCNAVISSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGSPLYQACALDLPCTAKALLDHGASVVQVYKGQTPLQAALAQKKSRCVKVIMEHIEKLETQAREGRGGKGPRRSNHGSQCER 180

The following BLAST results are available for this feature:

BLAST of mRNA_E_fasciculatus_S2_contig911.17190.1 vs.

BLAST of mRNA_E_fasciculatus_S2_contig911.17190.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1


Match Name	E-value	Identity	Description
Uncharacterized	7.520e-121	96.67	protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWH3...	[more]

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
E_fasciculatus_S2_contig911	contig	E_fasciculatus_S2_contig911:5176..8616 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90	2022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO2	2022-07-07

Properties


Property Name	Value
Stop	1
Start	1
Model size	543
Hectar predicted targeting category	other localisation
Exons	4
Ec32 ortholog description	Ankyrin repeat-containing domain
Ec32 ortholog	Ec-26_006620.1
Cds size	543

Relationships

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
1696842563.7525427-CDS-E_fasciculatus_S2_contig911:5175..5277	1696842563.7525427-CDS-E_fasciculatus_S2_contig911:5175..5277	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig911 5176..5277 -
1696842563.7631009-CDS-E_fasciculatus_S2_contig911:6141..6294	1696842563.7631009-CDS-E_fasciculatus_S2_contig911:6141..6294	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig911 6142..6294 -
1696842563.7740097-CDS-E_fasciculatus_S2_contig911:7202..7367	1696842563.7740097-CDS-E_fasciculatus_S2_contig911:7202..7367	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig911 7203..7367 -
1696842563.7852597-CDS-E_fasciculatus_S2_contig911:8493..8616	1696842563.7852597-CDS-E_fasciculatus_S2_contig911:8493..8616	Ectocarpus fasciculatus EfasUO2	CDS	E_fasciculatus_S2_contig911 8494..8616 -

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
mRNA_E_fasciculatus_S2_contig911.17190.1	prot_E_fasciculatus_S2_contig911.17190.1	Ectocarpus fasciculatus EfasUO2	polypeptide	E_fasciculatus_S2_contig911 5176..8616 -

Sequences

The following sequences are available for this feature:

protein sequence
mRNA from alignment at E_fasciculatus_S2_contig911:5176..8616-
coding sequence from alignment at E_fasciculatus_S2_contig911:5176..8616-

protein sequence of mRNA_E_fasciculatus_S2_contig911.17190.1

>prot_E_fasciculatus_S2_contig911.17190.1 ID=prot_E_fasciculatus_S2_contig911.17190.1|Name=mRNA_E_fasciculatus_S2_contig911.17190.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=181bp
MPADSLPRDDEGSETPVFKRRKTAASPLLATPARVLNQIQNGDTLDTGRV
LQALCNAVISSSVDEDEDPHALKLLAELLAEDGVDPNAGDEALWDNYGGS
PLYQACALDLPSTAKALLDHGASVVQVYKGQTPLQAALAQKDSRCVKVIM
EHIEKLETQAREGRGGRGPRRSNHGSQCER*

mRNA from alignment at E_fasciculatus_S2_contig911:5176..8616-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>mRNA_E_fasciculatus_S2_contig911.17190.1 ID=mRNA_E_fasciculatus_S2_contig911.17190.1|Name=mRNA_E_fasciculatus_S2_contig911.17190.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3441bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig911:5176..8616- (Ectocarpus fasciculatus EfasUO2)
ATGCCTGCCGACAGCTTGCCGAGGGATGACGAAGGGTCCGAAACACCAGT
CTTCAAGAGGAGGAAAACTGCGGCGTCTCCATTGCTCGCCACCCCGGCCC
GGGTTCTCAATCAAATCCAAAATGTGAGGAAGGAGAGTTGAGAGGGTTTT
ATGTTATGTACAATACACGGAGAGCCTTGGGTCTAGCCGCAACCATCCCT
AGCTCCCATAACGGCTAGCGTGTGAGCATGAGTTCAAGATGAACGCATTG
CTTCCTTCCAAATCTTGGCCAGAGTCCCGAGACCCTCACGTCGCTCGCTA
CAATACAATAGCTTCTCTCACGGCTGTTGTGTAGTCTAGTTGTACGACGG
AAGATGTTTGGAGATTGGAGCCGTCGAGCTGTTCGCTGCTGTTTCACATA
CTGCTGTACATATGCATATTAGCCCGCAAAACACCACAAGACACACAGCC
GTCTTTGTATGCATACAAAGCATGTGCAGCAGCTGCGATGGTCTTCTTGC
TATATTACGAATCGTTCGAATACGAATCGTTCGAATCGTTGTTATCTTGT
TATCTTCACCCCTTCCTTGCGCGCGTTGATGTTGTACATAGTAGTCTCAG
GGTAGTGGCCTTGTTACCCCGGCTTGCCGTTCCCATCACTGACGACATAA
TCAACCTGCACCTTGAGGCCTTGAGGTGGCATGTGTACCAAAACTTGTAG
ACTAGTCTAGAGATGGCCGGCTCTTCATCTACGAATACGTGTATGTCGGA
GCCCGATCCAATTTCGGTGCACAGGCGGTCACGGAGAACAAGTGTTATAT
ATAATTGCACTCCGATATACTGCTGTACATATCGTGCAGTACCTGTCGTA
GAGAGAGCCGTGTGGTTTGCATGTTTACAGAGCTCTAGTTACACGCGTAG
TTTGCTATTGTTGTCGACATGAGAGTCGGTACTCGAACTACAGCAGTAAC
GGGAAGGTATTGTATTGTAGTTACAGTACCGTCTTCCCGTCCTTTCACCG
CCAATGTCGGTGCTGCAGTACACGGCTCGTAGCGGATGCTCGCAGTGCAG
TATGCTTCTGCAGCACGACAATCAATCTAGCTGTATCTGTAGCTGTAGCT
GTAAGACCCTGGGCGCATCTATCTGCAGCATGCATGCCCTGGTCAGGTCA
GGCTCTCCTCTCTTGTGGACGAGGGCCTTCTCTGTCTCTCGCTCTTATTG
CTGTGCTACTTTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCAGG
GTGACACCCTCGACACCGGGCGGGTGCTCCAAGCATTGTGCAACGCGGTG
ATATCTTCCAGCGTGGACGAGGACGAGGACCCGCACGCCCTCAAGCTACT
GGCCGAGCTGCTTGCCGAGGACGGGGTGGACCCCAACGCCGGAGACGAAG
CTCTGTGGGACAACGTGAGAAGAAGTTTCTTTTTTGTTGTCTGCCCTGGG
GGGGGGGCAGACCAGTGCTCACCTCTCTCTCTCTCTATGTCCGTGGGAGT
GTTTAAGACGGGCATGGGTTTGTGTTTTTTGGTGATGGTCACAGAGAACG
TGTGCGTGTCGTGTTGTTTTCCAGAACTAACGCCGCCTTTGCGAACCCGG
CCTTCCGTTCGGACGTTTCGTAGAGCGGCAACAAAGCGACACACTGCTGT
TTGGCTCACTCAACTGGTGGTGTAGACGTGTAGACATACAGTAGATAGAA
CGTTCTAGGGTGCGCTATTGCGTTGCTGCTTTCGACGGAGTTGGAGTCGG
TGTTTGCGGAGTGCGTGCCGCAAGGAAGGGCGATCGATGCTCGTCTGGCT
CTATTCAATCAGCAACGATATCAGCGAAGCTATTGCATTGTACAGCATTG
TATCAATTGCATTGTATCAATAACCTTCCACGCGTCCCGCAACGGGACAG
TAGTCAGGCAGGAAAACGGCAACTGCAACAGTATGCCGCAAGTATTTCAT
CACACCCTGTGTCCCCCGTGTATGGATGTTTTTCATGGTCGCCTCACGTA
CTGTATGCTAGAACAGAAAATATTAGAGAAGATAGAACACTATTAGAACA
CTATTAGACTACTATTAGAACACTATTAGACTAGTATTTGTATGGTGGTT
CCGGCCAGCTCGATATCTCGATATTTTCGACACGCGTAGATATAGCTCTT
ATTCTGAGCGTCGCTCAAGGCAATACGATCCCCAGTTGACGTGTGCATCG
CCCCCTATCCAACGTACCGCTGTCAAGCAGCACACACATGAGCATCTCCC
TCCGTCCCTGCCTTCCCGTGCCAATATCGCCTACACACCTGCTGTTGGTG
CTGCGCGTGTCGTGTGTTGCAGTACGGCGGCAGCCCCCTGTACCAGGCGT
GCGCGCTAGACCTCCCTTCCACTGCGAAGGCTCTGCTGGACCACGGGGCG
TCGGTCGTCCAGGTGTACAAGGGACAGACGCCTCTACAGGCGGCGCTCGC
CCAGAAAGATTCCCGCTGCGTCAAGGTGAGGAGGGACTAGAATAGCCGTC
GGTTGGTGCTGGTGCTGGTGCTGCTAGACAACGCTGTTTGGTTTGCGGCA
CTCGAAAGACTCTAAAGACTACGGGGGGCATGCTTCTCGTGGTGGTGTGT
TTGTGGCGTGGTAGATAAAAGCATGGATGGAGGGATGAGGGGTGTATACT
GTGACACGGTATGATGCGCATATTGGGGTTTTGCTCGGAGTTGGGTGGGA
AGTACTCGCACTCGAGGTTGGGTTTAGATGCACGCGCCGATAGGCATTGG
CTGCCATCTACTTGACGGAGGACCTCGCCGTACAAACCTCCATTGCTGAG
TTCGGCATGCTGCTGTTGGTGCACGGTTTCATGGGAACAGGGACACCTCT
CCCCCCGTGCAGGAAGGGCTGCAGCAGGTGTAGGGGTGTGCTCAACGCCA
TGTCGTCGCGATATGACGCTCGCGTTGGACACCTCCTGTGCTACCCCTCT
TATCTACAATATCGAAAAACTATTATTGTTACTTTAGTAGTGAAGTGTTC
CTCTCCTCTCCTCTGTCGTGACGTGACGTCTAATTTAACATTTACATTTA
CCATTTAACCCAAGAGCAACTGTCGTAGAAAGCGTCCGCGATTGTTTCGG
CAAGGAGTTCCTGCGGCGGGTCTGCCGCAGTCACGCACAACGGCCAAATC
GACTTGGGTGCTGATTAATTCATGGGACGTACCCCCTGCTCTTGCCGACA
AGTTTAGCGCTACAGTTGTGAGAGGTTATGTAAGTGTTGCAGTCAGTCTT
GTAAGTGTTGCAGCAGTCTTGAAGTGTTACCCTAAGAACCACGTTTTCCC
CTCTTGTCTCCGTGTCGATCTTCCTGCCACTACCGATAGGTCATCATGGA
ACACATCGAAAAGCTCGAGACGCAAGCGCGCGAGGGGAGAGGAGGAAGGG
GCCCCAGGCGCTCCAATCACGGTAGCCAGTGCGAACGCTAG

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig911:5176..8616-

>mRNA_E_fasciculatus_S2_contig911.17190.1 ID=mRNA_E_fasciculatus_S2_contig911.17190.1|Name=mRNA_E_fasciculatus_S2_contig911.17190.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=543bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig911:5176..8616- (Ectocarpus fasciculatus EfasUO2)
ATGCCTGCCGACAGCTTGCCGAGGGATGACGAAGGGTCCGAAACACCAGT
CTTCAAGAGGAGGAAAACTGCGGCGTCTCCATTGCTCGCCACCCCGGCCC
GGGTTCTCAATCAAATCCAAAATGGTGACACCCTCGACACCGGGCGGGTG
CTCCAAGCATTGTGCAACGCGGTGATATCTTCCAGCGTGGACGAGGACGA
GGACCCGCACGCCCTCAAGCTACTGGCCGAGCTGCTTGCCGAGGACGGGG
TGGACCCCAACGCCGGAGACGAAGCTCTGTGGGACAACTACGGCGGCAGC
CCCCTGTACCAGGCGTGCGCGCTAGACCTCCCTTCCACTGCGAAGGCTCT
GCTGGACCACGGGGCGTCGGTCGTCCAGGTGTACAAGGGACAGACGCCTC
TACAGGCGGCGCTCGCCCAGAAAGATTCCCGCTGCGTCAAGGTCATCATG
GAACACATCGAAAAGCTCGAGACGCAAGCGCGCGAGGGGAGAGGAGGAAG
GGGCCCCAGGCGCTCCAATCACGGTAGCCAGTGCGAACGCTAG