mRNA_E_fasciculatus_S2_contig911.17189.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig911.17189.1
Unique NamemRNA_E_fasciculatus_S2_contig911.17189.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIP2_9PHAE)

HSP 1 Score: 412 bits (1058), Expect = 4.150e-139
Identity = 221/235 (94.04%), Postives = 226/235 (96.17%), Query Frame = 1 
Query:    4 MQRGSPPKVKPHNYDALVKPFELTTGGLAKLLPDEIEITSKEEAVLYACNGDDVEERLQGGRATLTTHRILWSERSRGAHGGVHVCMHLSDIREARPQPRKRFLNSSRIHIFPTGQIDGDKPAVMLSVKGRDDFFSNMESALAREAWVVETAAEVMGRRAAGEGSGXXXXSRASA-AGVAGILRRQEANRKATAEIATEAFSDLKSLIDKAKEVVAVVERYSAALQDKQTAAAAG 705
            MQRGSPPKVKPHNYDALVKPFELTTGGLAKLLPDEIEITSKEEAVLYACNGDDVEERLQGGRATLTTHRILWSERSR AHGGVHVC+HLSDIR+ARPQPR+RFLNSSRIHIFPTGQIDGDKPAVMLSVKGRDDFFS+MESALAR+AWVVETAAEVMGRRAAGEG  XXXX      AGVAGILRRQEANRKATAEIATEAFSDLKSLIDKAKEVVAVVERYSAALQDKQTAAAAG
Sbjct:    1 MQRGSPPKVKPHNYDALVKPFELTTGGLAKLLPDEIEITSKEEAVLYACNGDDVEERLQGGRATLTTHRILWSERSRVAHGGVHVCIHLSDIRKARPQPRRRFLNSSRIHIFPTGQIDGDKPAVMLSVKGRDDFFSHMESALARKAWVVETAAEVMGRRAAGEGXXXXXXXXXXXXAGVAGILRRQEANRKATAEIATEAFSDLKSLIDKAKEVVAVVERYSAALQDKQTAAAAG 235
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWH2_ECTSI)

HSP 1 Score: 384 bits (987), Expect = 2.450e-127
Identity = 204/220 (92.73%), Postives = 208/220 (94.55%), Query Frame = 3 
Query:  711 DKDEAGDGGDPTREAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAEAAXXXXXGAGWGDGLVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFVQSMQEVESTTTSTAT 1370
            DKDEAGDGGDPTREAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLL TARLLGPTKLGMSLRRFASGVLVIQADSHSD+AVSEKLVKAAEA      G GWGDGLVATQVARDLRVS TLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFV+SM+E EST  +TAT
Sbjct:  203 DKDEAGDGGDPTREAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLATARLLGPTKLGMSLRRFASGVLVIQADSHSDQAVSEKLVKAAEA-EAAAGGGGWGDGLVATQVARDLRVSATLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFVKSMEEAESTKATTAT 421
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZG34_9STRA)

HSP 1 Score: 192 bits (489), Expect = 1.420e-54
Identity = 107/188 (56.91%), Postives = 131/188 (69.68%), Query Frame = 3 
Query:  759 DLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAEAAXXXXXGAGWGDGLVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPFERF 1322
            DLS+ L +IG  SPVTK +AGT+YHQQLARQLADFL       AG R LL   GGMMTLPD++++FNRARGT+L+SP DLLT +R+L    LGM LR F SGV VIQ+D++ D AV E+LV  A+            + L+AT VA  L VS+ LA EHL TAE AGLLCRDE++EG RFY N F ++
Sbjct:  111 DLSAALLNIGFISPVTKETAGTQYHQQLARQLADFLG------AGNRGLLQRVGGMMTLPDIYAIFNRARGTQLISPEDLLTVSRMLSALGLGMRLRTFPSGVAVIQSDAYDDAAVGEQLVALAKE-----------NALMATSVAAVLHVSLVLAQEHLATAEQAGLLCRDETLEGLRFYPNLFPQY 281
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJU6_9STRA)

HSP 1 Score: 166 bits (420), Expect = 6.400e-44
Identity = 91/192 (47.40%), Postives = 127/192 (66.15%), Query Frame = 3 
Query:  750 EAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAEAAXXXXXGAGWGDG-LVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPFERF 1322
            EA ++ +++ ++GIASPVT+ +AG  YHQQLARQLA FL +P          LD +GG+MTL D++ +FNRARG+EL+SP DL   A L  P  LGM LR+F  G++V+Q+DSH++  V+ +L K A+AA          DG L +  VAR L++S+ LA+E+L+ AE  G LCRD++ EG  FY N F  F
Sbjct:  147 EANEMQALMLNMGIASPVTRENAGDAYHQQLARQLASFLKTP----------LDAYGGIMTLSDIYCLFNRARGSELISPDDLYHAAVLQKPLHLGMHLRKFDGGLIVLQSDSHNEDRVASRLEKMAKAA---------ADGCLTSNDVARALKISLPLALEYLKVAEQKGKLCRDDTFEGLHFYPNRFMNF 319
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TG31_9STRA)

HSP 1 Score: 166 bits (419), Expect = 1.400e-42
Identity = 101/196 (51.53%), Postives = 124/196 (63.27%), Query Frame = 3 
Query:  747 REAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLS--SPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAEAAXXXXXGAGWGDG-LVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFV 1325
            RE  +L  +L ++GI++PVT+ SAG+ YHQ+LARQLA FL+  S      G R+LL   GGMMTL DVF +FNRARGT L+SP DLL     L P +LGM LRRF SGV V++A   S+  V  +L   AEA           DG L A  VA  LRVS+ LA E L TAE  GLLCRD+SV+GT F+ N F  +V
Sbjct:  256 REDAELQGLLLNMGISNPVTRISAGSLYHQELARQLARFLTGGSTSAGALGRRSLLSERGGMMTLHDVFCLFNRARGTALISPEDLLDACEALEPLQLGMRLRRFPSGVSVVEAMDFSEERVGARLRALAEAE---------ADGSLTALDVATHLRVSIALAQEFLGTAEAQGLLCRDQSVQGTLFWPNRFPAWV 442
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=2 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024THV9_9STRA)

HSP 1 Score: 160 bits (404), Expect = 8.430e-41
Identity = 88/202 (43.56%), Postives = 127/202 (62.87%), Query Frame = 3 
Query:  720 EAGDGGDPTREAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAEAAXXXXXGAGWGDGLVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFV 1325
            ++ D   P  EA ++ ++L ++GIASPVT+ +AG  YH QLARQLA FL  P          LD  GG++TL D++ +FNRARGTEL+SP DL   A L  P  LGM +R+F  G++V+QADSH++  V+ +L   A +A            + ++ VAR L++S+ LAVE+L+ AE  G LCRD++ +G  +Y+N F  FV
Sbjct:  222 DSSDASAPNDEATEMHAMLLNMGIASPVTRENAGDAYHVQLARQLASFLKLP----------LDASGGILTLSDIYCLFNRARGTELISPEDLYHAAALQKPLHLGMHMRKFEGGLIVLQADSHNEDRVAARLEALATSASEGC--------ITSSDVARALKISIPLAVEYLKAAEQKGKLCRDDTFDGLLYYSNRFPSFV 405
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SSI3_9STRA)

HSP 1 Score: 157 bits (396), Expect = 7.920e-40
Identity = 91/193 (47.15%), Postives = 122/193 (63.21%), Query Frame = 3 
Query:  750 EAEDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAEAAXXXXXGAGWGDGLVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFVQ 1328
            EAE +  +  +IGI+SPVT++SAG+ +HQQLARQLADFL    G+R      L   GG++TLPD++ +FNRARG  LVSP DLL +A+LLGP  L M  R F SGV+V++AD H D  +S++L   A+              L +  V+  LR+ V LA EHL+ AE  G LCRDE   G RFY N F+ +++
Sbjct:  212 EAE-MGDLFLNIGISSPVTRSSAGSHFHQQLARQLADFLIG--GER------LSRAGGVLTLPDIYCIFNRARGLALVSPDDLLASAKLLGPLGLSMHCREFGSGVIVVEADDHDDALLSKRLAAIAKEHTH----------LTSIHVSTILRIPVPLAREHLKIAEERGELCRDEGNGGVRFYPNYFKDYLE 385
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662XUA8_9STRA)

HSP 1 Score: 157 bits (396), Expect = 9.360e-40
Identity = 93/205 (45.37%), Postives = 130/205 (63.41%), Query Frame = 3 
Query:  717 DEAGDGGDPTREAE--DLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAEAAXXXXXGAGWGDGLVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFV 1325
            +EA DG + +RE E   LSS++ D+GI SPVT+ ++G  Y++QLARQLA++LS    +           GG+MTL D++ +FNRARG ELVSP DL   ARL    KLG S+R+F  G+LV+Q DSH +  V+++L K A  +      +G+   + +T V+ +L  S  LA E+L+ AE  G LCRD++ EGT FY N F RFV
Sbjct:  207 EEAQDGVETSREEEINKLSSLMLDMGITSPVTRENSGAAYYEQLARQLAEYLSDHMPRN----------GGIMTLSDIYCMFNRARGVELVSPDDLYHAARLQRKLKLGYSVRKFDGGLLVLQTDSHREDKVADRLAKMAHKSS-----SGY---ITSTDVSVELHTSFPLAWEYLKVAEELGKLCRDDTFEGTNFYPNEFARFV 393
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BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3R7G013_9STRA)

HSP 1 Score: 152 bits (384), Expect = 1.000e-39
Identity = 86/188 (45.74%), Postives = 120/188 (63.83%), Query Frame = 3 
Query:  762 LSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAEAAXXXXXGAGWGDGLVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPFERFV 1325
            LSS++ D+GI SPVT+ ++G  Y++QLARQLA++LS    +           GG+MTL D++ +FNRARG ELVSP DL   A L    KLG S+R+F  G+LV+Q DSH +  V+E+L   A+ +      +G+   +  T V+ +L  S  LA E+L+ AE  G +CRDE+ EGT FY+N FERFV
Sbjct:   63 LSSLMLDMGITSPVTRENSGAAYYEQLARQLAEYLSEHMPRN----------GGIMTLSDIYCMFNRARGVELVSPDDLYHAALLQKKLKLGYSVRKFDGGLLVLQTDSHREDKVAERLANMAQKSS-----SGY---ITPTDVSVELHTSFPLAWEYLKVAEELGKICRDETFEGTNFYSNDFERFV 232
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Match: Vacuolar (protein-sorting-associated protein 36 (Fragment) n=1 Tax=Haematococcus lacustris TaxID=44745 RepID=A0A699ZB04_HAELA)

HSP 1 Score: 150 bits (380), Expect = 1.580e-39
Identity = 90/196 (45.92%), Postives = 115/196 (58.67%), Query Frame = 3 
Query:  756 EDLSSILQDIGIASPVTKTSAGTRYHQQLARQLADFLSSPPGKRAGARTLLDMFGGMMTLPDVFSVFNRARGTELVSPADLLTTARLLGPTKLGMSLRRFASGVLVIQADSHSDRAVSEKLVKAAE----------AAXXXXXGAGWGDGLVATQVARDLRVSVTLAVEHLRTAETAGLLCRDESVEGTRFYANPF 1313
            ED  + L  +GI+SPVT+ SAG RYH +L+RQLADFL + P KRAG          ++ LPDV+ +FNRARGTELVSP DLL   +L G  +L +SLR F SG + +Q  +HSD AV   L + A+           +      A  G  L A  VAR+L  +  +A EHL  AE  G+LCRDE  EG RF+ N F
Sbjct:   14 EDTQAQLIALGISSPVTRESAGARYHLELSRQLADFLLAGPLKRAG---------DLLPLPDVYCLFNRARGTELVSPDDLLAAVKLFGQARLPLSLRTFPSGFIAVQGAAHSDDAVCATLGRMAQPVKLAPGDGDTSAVPSLHAALGSPLTAVDVARELGCATAVAREHLVLAEARGILCRDEGPEGLRFFRNFF 200
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig911.17189.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Vacuolar4.150e-13994.04protein-sorting-associated protein 36 n=1 Tax=Ecto... [more]
Vacuolar2.450e-12792.73protein-sorting-associated protein 36 n=1 Tax=Ecto... [more]
Vacuolar1.420e-5456.91protein-sorting-associated protein 36 n=1 Tax=Trib... [more]
Vacuolar6.400e-4447.40protein-sorting-associated protein 36 n=1 Tax=Apha... [more]
Vacuolar1.400e-4251.53protein-sorting-associated protein 36 n=2 Tax=Mono... [more]
Vacuolar8.430e-4143.56protein-sorting-associated protein 36 n=2 Tax=Apha... [more]
Vacuolar7.920e-4047.15protein-sorting-associated protein 36 n=1 Tax=Rhiz... [more]
Vacuolar9.360e-4045.37protein-sorting-associated protein 36 n=1 Tax=Noth... [more]
Vacuolar1.000e-3945.74protein-sorting-associated protein 36 n=3 Tax=Phyt... [more]
Vacuolar1.580e-3945.92protein-sorting-associated protein 36 (Fragment) n... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig911contigE_fasciculatus_S2_contig911:178..3196 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score334.0
Seed ortholog evalue6.3e-89
Seed eggNOG ortholog2880.D7FWH2
Preferred nameVPS36
Model size1370
KEGG rclassRC00010,RC00100,RC00950,RC01025
KEGG koko:K01426,ko:K12190
KEGG ReactionR02540,R03096,R03180,R03909,R05551,R05590
KEGG Pathwayko00330,ko00360,ko00380,ko00627,ko00643,ko01120,ko04144,map00330,map00360,map00380,map00627,map00643,map01120,map04144
KEGG ModuleM00410
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000323,GO:0000429,GO:0000430,GO:0000433,GO:0000578,GO:0000814,GO:0003002,GO:0003006,GO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005768,GO:0005770,GO:0005773,GO:0005829,GO:0006355,GO:0006357,GO:0006403,GO:0006508,GO:0006511,GO:0006605,GO:0006623,GO:0006807,GO:0006810,GO:0006811,GO:0006820,GO:0006862,GO:0006886,GO:0006914,GO:0006996,GO:0007032,GO:0007034,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007314,GO:0007350,GO:0007351,GO:0007389,GO:0007584,GO:0008022,GO:0008104,GO:0008150,GO:0008152,GO:0008283,GO:0008298,GO:0008358,GO:0008593,GO:0008595,GO:0009056,GO:0009057,GO:0009605,GO:0009790,GO:0009798,GO:0009880,GO:0009889,GO:0009890,GO:0009892,GO:0009948,GO:0009952,GO:0009966,GO:0009987,GO:0009991,GO:0009994,GO:0010008,GO:0010256,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0010646,GO:0010941,GO:0012505,GO:0015031,GO:0015711,GO:0015748,GO:0015833,GO:0015865,GO:0015867,GO:0015868,GO:0015893,GO:0015931,GO:0016020,GO:0016043,GO:0016050,GO:0016192,GO:0016197,GO:0016236,GO:0019219,GO:0019222,GO:0019538,GO:0019941,GO:0019953,GO:0021700,GO:0022412,GO:0022414,GO:0022607,GO:0023051,GO:0023052,GO:0030154,GO:0030163,GO:0031090,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031410,GO:0031667,GO:0031668,GO:0031669,GO:0031670,GO:0031902,GO:0031982,GO:0032182,GO:0032258,GO:0032501,GO:0032502,GO:0032504,GO:0032507,GO:0032509,GO:0032511,GO:0032991,GO:0033036,GO:0033365,GO:0034067,GO:0034613,GO:0035282,GO:0036257,GO:0036258,GO:0036452,GO:0036477,GO:0042221,GO:0042493,GO:0042886,GO:0042981,GO:0043025,GO:0043067,GO:0043130,GO:0043162,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043328,GO:0043632,GO:0044085,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044297,GO:0044422,GO:0044424,GO:0044425,GO:0044433,GO:0044440,GO:0044444,GO:0044446,GO:0044464,GO:0044703,GO:0045013,GO:0045014,GO:0045053,GO:0045184,GO:0045185,GO:0045324,GO:0045450,GO:0045892,GO:0045934,GO:0045990,GO:0046015,GO:0046618,GO:0046907,GO:0048468,GO:0048469,GO:0048477,GO:0048519,GO:0048523,GO:0048583,GO:0048599,GO:0048609,GO:0048856,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051235,GO:0051252,GO:0051253,GO:0051503,GO:0051603,GO:0051641,GO:0051649,GO:0051651,GO:0051704,GO:0051716,GO:0060255,GO:0060810,GO:0060811,GO:0061919,GO:0061984,GO:0061985,GO:0061986,GO:0061987,GO:0065007,GO:0065008,GO:0070727,GO:0070887,GO:0070925,GO:0071496,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0080090,GO:0097159,GO:0097458,GO:0097708,GO:0098588,GO:0098796,GO:0098805,GO:1901264,GO:1901363,GO:1901564,GO:1901565,GO:1901575,GO:1902679,GO:1903506,GO:1903507,GO:1904669,GO:2000112,GO:2000113,GO:2001141
Exons4
EggNOG free text desc.protein transport to vacuole involved in ubiquitin-dependent protein catabolic process via the multivesicular body sorting pathway
EggNOG OGsKOG2760@1,KOG2760@2759
Ec32 ortholog descriptionWinged helix-turn-helix DNA-binding domain
Ec32 orthologEc-26_006630.1
EC3.5.1.4
Cds size762
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131,ko04147
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig911.17189.1prot_E_fasciculatus_S2_contig911.17189.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig911 181..2591 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842563.6585982-UTR-E_fasciculatus_S2_contig911:177..1801696842563.6585982-UTR-E_fasciculatus_S2_contig911:177..180Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig911 178..180 +
1696842563.723176-UTR-E_fasciculatus_S2_contig911:2591..31961696842563.723176-UTR-E_fasciculatus_S2_contig911:2591..3196Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig911 2592..3196 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842563.6724713-CDS-E_fasciculatus_S2_contig911:180..3051696842563.6724713-CDS-E_fasciculatus_S2_contig911:180..305Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig911 181..305 +
1696842563.6863217-CDS-E_fasciculatus_S2_contig911:926..10721696842563.6863217-CDS-E_fasciculatus_S2_contig911:926..1072Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig911 927..1072 +
1696842563.7006989-CDS-E_fasciculatus_S2_contig911:1684..17801696842563.7006989-CDS-E_fasciculatus_S2_contig911:1684..1780Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig911 1685..1780 +
1696842563.7112083-CDS-E_fasciculatus_S2_contig911:2196..25911696842563.7112083-CDS-E_fasciculatus_S2_contig911:2196..2591Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig911 2197..2591 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig911.17189.1

>prot_E_fasciculatus_S2_contig911.17189.1 ID=prot_E_fasciculatus_S2_contig911.17189.1|Name=mRNA_E_fasciculatus_S2_contig911.17189.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=254bp
MQRGSPPKVKPHNYDALVKPFELTTGGLAKLLPDEIEITSKEEAVLYACN
GDDVEERLQGGRATLTTHRILWSERSRGAHGGVHVCMHLSDIREARPQPR
KRFLNSSRIHIFPTGQIDGDKPAVMLSVKGRDDFFSNMESALAREAWVVE
TAAEVMGRRAAGEGSGGGGSSRASAAGVAGILRRQEANRKATAEIATEAF
SDLKSLIDKAKEVVAVVERYSAALQDKQTAAAAGGVTRMRRAMAATPRGK
PRT*
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mRNA from alignment at E_fasciculatus_S2_contig911:178..3196+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig911.17189.1 ID=mRNA_E_fasciculatus_S2_contig911.17189.1|Name=mRNA_E_fasciculatus_S2_contig911.17189.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3019bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig911:178..3196+ (Ectocarpus fasciculatus EfasUO2)
AAGATGCAACGTGGGAGCCCGCCGAAAGTCAAACCACACAACTATGATGC
CTTGGTGAAGCCCTTCGAGCTGACGACGGGAGGCCTCGCCAAGCTGTTGC
CAGATGAAATCGAAATTACCTCCAAAGAGTGAGTTATTGCAGTCAACAGC
AGTCAACAGCAGTCAACCTTTTGACATTCGGCATCGATCACCCCGCATTC
CAACATTGCAACCAAGGGATACTGCTGGCAGGATGCCAGGTCCTGCATGC
GGGCTTGAGCTGTGTCTACGGAGATATTTCGTTGCTTGTACAGCAGTGTA
GTGCCATTTTTCAGGCTGTCAGGTTTCATCCATGCTGTGCATACATACTA
CAAGTCCATATTTTTGGTGTCGATGCACGTTTCGCGTTGGACACCCGTGC
CTCACGGCAACAGGGTGAAGGAACGGCCGTTGCCTTGCCGCTGCACGTAT
GCATAGGTGGCACGTAGCAATAGCATTGATTGTTTCTTCCTTTGGTGTAC
TGCTGTACAATGACTGCTGCTGCCGTTATTCAGGTGTGTTTTCTCCCCTC
AGGGCGTCCGAAGGTACAGCAGTACATAGGTTGATAGTCTATCGCAAAGA
CATGTCATCTCTTGATCGTCCGTCGTTTGAAGGTATCTACAAGATGGACG
ATATCTCAGTTGTGCTGAGAGGGATCGCGGCATATTTACATATTTACCAA
ACACACTCAATCTATAGTTTGACTACATACCTTTCTGTCGCTGCTGCAGG
GAGGCGGTGCTGTACGCGTGCAACGGCGACGACGTGGAGGAACGGTTGCA
GGGGGGAAGGGCGACGCTCACGACTCACCGGATCCTTTGGTCCGAGCGCT
CGCGAGGGGCACACGGCGGTGTCCACGTCTGCATGCATCTCTCCGGTACT
ACTGCTGTAACAGCACAGCAGCACTGCTAACTGCTGTGCTTCTCGAGAAT
GTAGTTCACAGAACGAGGGCGGGTGTGTTGTTGATTTATGATTTATGCTG
GTTGGTACTCTGTTACTTCGAATAGTTGAGGCTCTTCACCTCTGGAACGG
AAATCAGCACATGCACATATATACGGAAATGAACACCGCTACAAGTTGGA
GACTATTTATTGCAATAGGCTTCGCCAAGTACAAGTACAAGTACACGCGT
TCGTGCCAACAGCAGGGGCTCAGAACTCCACATCGGTTTGGTAGTACATG
TAGTCGGGGCACCCTCTCTCCGAAGGTTCAGTTGTAGACTATATGTAGGT
AGACGGCGGTATGGACTACAGTTGTTGTGACTCCGCAGGTTGCCCTTGTT
CAAAGTGGAGGGATGGGCTACATGTGCCCTTTCGGACGAGACTAGGTAGG
GCAGCACTACAGGTTCAACCGGCTGCCTGTCACCAACGAGCGTCGTGCAT
GTCGTGGCTGGTGATGATGATGATGATGCGTGTGGCACTCACTGCTGTTT
TTGTTGCACGCTACGTTTGCCTGGTTGCTCAACGTGCCGTGCCTCGCTTT
TGTCCAGACATCCGCGAAGCTAGGCCGCAACCACGAAAAAGATTCCTGAA
TTCTTCCAGGATACACATATTCCCGACCGGTCAGATCGACGGCGACAAAC
CAGGTACATAGATTTGGGGCGGCAAGTGAGTACACACATACCCATACACG
CCAGGCGTTTCGCTGTGAAGGGCCGCGGGTACCGCTCCCGAGCTCGAAAT
GGTTGATGCCGCGCGCTTCGCAACACGCTGCGCTTGCGGAGCAGGTTCTA
CTTTCGATTCGATTCCACATTCACGAGAGGAGAGCTCCAAGGGATACATA
AGCCCATACATAGTACGGCGTACATGGCAGTGCATGGCTGTGGGGATAAT
CGAGTGTCGGATCGTGTGATCGAGCTGCATCTTGCTATATGGAATGTGGA
TTTGTTCCGATTGGGGTTAGAAGATACCCGGTACCTTTTTTTTACCGCGG
TTTTTCCGTCTGTGTACCACCGACGCGTCACACAAACTCCCCCCACCCCC
CTGTCTCTCCTGCGTGCAGCGGTGATGCTTTCTGTCAAGGGGAGAGACGA
CTTCTTCTCAAACATGGAGTCAGCCCTGGCGCGCGAGGCGTGGGTCGTCG
AGACCGCGGCGGAGGTGATGGGTCGCCGGGCAGCAGGCGAGGGCAGCGGC
GGCGGCGGCAGCAGCAGGGCATCGGCGGCGGGCGTTGCCGGCATCCTACG
AAGACAAGAGGCCAACCGAAAAGCCACGGCCGAGATAGCAACGGAGGCTT
TCTCGGACCTCAAGAGTCTCATCGACAAGGCCAAGGAGGTGGTGGCCGTC
GTGGAACGGTACTCGGCTGCTCTCCAGGACAAGCAGACGGCGGCGGCGGC
GGGGGGGGTGACAAGGATGAGGCGGGCGATGGCGGCGACCCCACGCGGGA
AGCCGAGGACCTGAGCAGCATCCTCCAAGACATCGGTATCGCGAGCCCCG
TGACCAAGACCAGCGCCGGCACGCGCTACCACCAGCAGCTAGCCCGGCAG
CTGGCGGACTTCCTCTCCTCGCCGCCGGGGAAGCGCGCGGGTGCCCGGAC
TCTCCTGGACATGTTCGGCGGGATGATGACCCTGCCTGACGTCTTCTCGG
TCTTCAACCGCGCGAGAGGCACGGAGCTCGTGTCCCCCGCCGACCTCCTC
ACCACCGCAAGGCTGCTCGGCCCCACCAAGCTGGGCATGTCGCTCCGAAG
GTTCGCCTCCGGCGTGCTGGTGATCCAGGCGGACTCGCACAGCGACCGGG
CGGTCAGCGAGAAGCTGGTCAAGGCCGCGGAGGCCGCGGCGGCGGCGGCG
GGAGGGGCGGGGTGGGGGGACGGCCTCGTGGCGACGCAGGTAGCGAGGGA
CTTACGGGTGTCGGTCACGCTGGCGGTGGAACACCTGCGCACGGCCGAGA
CGGCAGGGTTGCTGTGCCGGGACGAGAGCGTGGAAGGGACTCGCTTCTAC
GCGAACCCTTTCGAACGATTCGTACAGTCCATGCAGGAGGTGGAGTCGAC
CACCACCAGCACTGCAACA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig911:178..3196+

>mRNA_E_fasciculatus_S2_contig911.17189.1 ID=mRNA_E_fasciculatus_S2_contig911.17189.1|Name=mRNA_E_fasciculatus_S2_contig911.17189.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=762bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig911:178..3196+ (Ectocarpus fasciculatus EfasUO2)
ATGCAACGTGGGAGCCCGCCGAAAGTCAAACCACACAACTATGATGCCTT
GGTGAAGCCCTTCGAGCTGACGACGGGAGGCCTCGCCAAGCTGTTGCCAG
ATGAAATCGAAATTACCTCCAAAGAGGAGGCGGTGCTGTACGCGTGCAAC
GGCGACGACGTGGAGGAACGGTTGCAGGGGGGAAGGGCGACGCTCACGAC
TCACCGGATCCTTTGGTCCGAGCGCTCGCGAGGGGCACACGGCGGTGTCC
ACGTCTGCATGCATCTCTCCGACATCCGCGAAGCTAGGCCGCAACCACGA
AAAAGATTCCTGAATTCTTCCAGGATACACATATTCCCGACCGGTCAGAT
CGACGGCGACAAACCAGCGGTGATGCTTTCTGTCAAGGGGAGAGACGACT
TCTTCTCAAACATGGAGTCAGCCCTGGCGCGCGAGGCGTGGGTCGTCGAG
ACCGCGGCGGAGGTGATGGGTCGCCGGGCAGCAGGCGAGGGCAGCGGCGG
CGGCGGCAGCAGCAGGGCATCGGCGGCGGGCGTTGCCGGCATCCTACGAA
GACAAGAGGCCAACCGAAAAGCCACGGCCGAGATAGCAACGGAGGCTTTC
TCGGACCTCAAGAGTCTCATCGACAAGGCCAAGGAGGTGGTGGCCGTCGT
GGAACGGTACTCGGCTGCTCTCCAGGACAAGCAGACGGCGGCGGCGGCGG
GGGGGGTGACAAGGATGAGGCGGGCGATGGCGGCGACCCCACGCGGGAAG
CCGAGGACCTGA
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