mRNA_E_fasciculatus_S2_contig9105.17185.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9105.17185.1
Unique NamemRNA_E_fasciculatus_S2_contig9105.17185.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9105.17185.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K0J1_9PHAE)

HSP 1 Score: 277 bits (709), Expect = 2.170e-83
Identity = 199/253 (78.66%), Postives = 201/253 (79.45%), Query Frame = -3 
Query:    1 EIEASRQQQRRNPRSHRSFGAXXXXXXXXXTRSHNGSCSSGSSVPRTVGAGVTTKCFFDSTLSADGYNDYNAGDXXXXXXXXXXXXXXXXXXXXXXXXXVSSERNGGGNXXXXXXX----DQRTSSSRGWDPPNQRGPGYKRDRDRVEADGGWGATLRGFRGGDNADADSSRGGGSSAFM--------GVSGGTSQTXXXXXXPSIMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPA 723
            EIEASRQQ RRNPRSHRSF A         TRSHNGSCSSGSSVPRTVGAGVTTKCFFDSTLSADGYNDYNAGD XXXXXX   XXXXXXXXXXXXXXX          XXXXXXX    DQRTSSSRGWDPPNQRGPGYKRDRDR EADGGWGATLRGFRGG+NA+                     GVSGGTS TXXXXXXPSIMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPA
Sbjct:  694 EIEASRQQHRRNPRSHRSFEAGGG------TRSHNGSCSSGSSVPRTVGAGVTTKCFFDSTLSADGYNDYNAGDDXXXXXXFRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGDQRTSSSRGWDPPNQRGPGYKRDRDRAEADGGWGATLRGFRGGNNANCGXXXXXXXXXXXXXXXXXXXGVSGGTSLTXXXXXXPSIMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPA 940
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BLAST of mRNA_E_fasciculatus_S2_contig9105.17185.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF04_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 2.660e-43
Identity = 98/134 (73.13%), Postives = 101/134 (75.37%), Query Frame = -3 
Query:    1 DQRTSSSRGWDPPNQRGPGYKRDRDRVEADGGWGATLRGFRGGDNADADSSRGGGSSAFMGVSGGTSQTXXXXXXPS---------IMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPA 375
            +QRTSSSRGWDPPNQRGPGYKRDRDRVEADGGWGATLRGFRGG+NA+                      XXXXXX           IMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPA
Sbjct:  477 EQRTSSSRGWDPPNQRGPGYKRDRDRVEADGGWGATLRGFRGGNNANRGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXIMSSDDVSVSSYGHPVTVLPGSPNNIHFNGRPPPSLAKIRLEAVRSPA 610
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9105.17185.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.170e-8378.66protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized2.660e-4373.13protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9105contigE_fasciculatus_S2_contig9105:5371..6095 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size725
Hectar predicted targeting categoryother localisation
Exons1
Cds size375
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842563.375552-UTR-E_fasciculatus_S2_contig9105:5370..54371696842563.375552-UTR-E_fasciculatus_S2_contig9105:5370..5437Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9105 5371..5437 +
1696842563.3972065-UTR-E_fasciculatus_S2_contig9105:5812..60951696842563.3972065-UTR-E_fasciculatus_S2_contig9105:5812..6095Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9105 5813..6095 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842563.3866785-CDS-E_fasciculatus_S2_contig9105:5437..58121696842563.3866785-CDS-E_fasciculatus_S2_contig9105:5437..5812Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9105 5438..5812 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9105.17185.1prot_E_fasciculatus_S2_contig9105.17185.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9105 5438..5812 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9105.17185.1

>prot_E_fasciculatus_S2_contig9105.17185.1 ID=prot_E_fasciculatus_S2_contig9105.17185.1|Name=mRNA_E_fasciculatus_S2_contig9105.17185.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=125bp
MLFGDPGRTVTGCPYDETDTSSEDMMDGGGEDVDVWLVPPDTPMKADEPP
PLLLSASALSPPRKPRSVAPQPPSASTRSRSRLYPGPRWFGGSHPRDEDV
LWSPLPLPLPLPPPFRSDDTTRRW*
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mRNA from alignment at E_fasciculatus_S2_contig9105:5371..6095+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9105.17185.1 ID=mRNA_E_fasciculatus_S2_contig9105.17185.1|Name=mRNA_E_fasciculatus_S2_contig9105.17185.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=725bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9105:5371..6095+ (Ectocarpus fasciculatus EfasUO2)
GGCCGGCGAGCGCACGGCCTCGAGCCTGATCTTGGCCAGCGAAGGCGGCG
GCCTACCGTTGAAGTGGATGTTGTTCGGGGACCCCGGAAGGACGGTGACC
GGGTGCCCGTACGACGAAACCGACACGTCGTCGGAGGACATGATGGACGG
TGGCGGGGAGGACGTTGACGTCTGGCTCGTGCCTCCCGACACCCCCATGA
AGGCCGACGAACCGCCCCCTCTGCTGCTGTCCGCATCCGCGTTGTCCCCC
CCCCGGAAACCGCGCAGCGTCGCGCCCCAGCCCCCGTCGGCCTCGACCCG
ATCGCGGTCCCGCTTGTACCCCGGGCCGCGCTGGTTCGGTGGGTCCCACC
CGCGCGACGAGGACGTCCTCTGGTCGCCGTTGCCGTTGCCGTTGCCGTTG
CCTCCCCCGTTCCGCTCCGACGACACTACCCGGCGGTGGTGATGTTGCTG
CTGCTGCTGCTGCTGCTGCTGCTGACCGTGGTAGTCGCTGCTGTCATCAT
CGTCGCCAGCATTGTAGTCGTTGTAGCCGTCCGCCGAGAGGGTGGAGTCG
AAGAAGCACTTGGTGGTCACGCCGGCCCCCACGGTGCGGGGAACGCTGCT
GCCGCTGCTGCAGCTGCCGTTGTGGCTCCGCGTGCCGCTGCCGCCGCCGC
CGCCGCCGCCGGCCCCGAAGCTCCGGTGGGAGCGGGGATTTCGGCGTTGC
TGCTGCCGGCTAGCCTCGATCTCCG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9105:5371..6095+

>mRNA_E_fasciculatus_S2_contig9105.17185.1 ID=mRNA_E_fasciculatus_S2_contig9105.17185.1|Name=mRNA_E_fasciculatus_S2_contig9105.17185.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=375bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9105:5371..6095+ (Ectocarpus fasciculatus EfasUO2)
ATGTTGTTCGGGGACCCCGGAAGGACGGTGACCGGGTGCCCGTACGACGA
AACCGACACGTCGTCGGAGGACATGATGGACGGTGGCGGGGAGGACGTTG
ACGTCTGGCTCGTGCCTCCCGACACCCCCATGAAGGCCGACGAACCGCCC
CCTCTGCTGCTGTCCGCATCCGCGTTGTCCCCCCCCCGGAAACCGCGCAG
CGTCGCGCCCCAGCCCCCGTCGGCCTCGACCCGATCGCGGTCCCGCTTGT
ACCCCGGGCCGCGCTGGTTCGGTGGGTCCCACCCGCGCGACGAGGACGTC
CTCTGGTCGCCGTTGCCGTTGCCGTTGCCGTTGCCTCCCCCGTTCCGCTC
CGACGACACTACCCGGCGGTGGTGA
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