mRNA_E_fasciculatus_S2_contig910.17180.1 (mRNA) Ectocarpus fasciculatus EfasUO2
|
Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig910.17180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD6_ECTSI) HSP 1 Score: 281 bits (719), Expect = 5.230e-86 Identity = 178/323 (55.11%), Postives = 207/323 (64.09%), Query Frame = 1
Query: 1 RSNTCSGVGGLLYHGIVAYMQAVAGDLVDFFESLDACVDVVLRYPGIVRFRPHLIHCILASSHFVHRRDVYDAISGVYNSTRPTSFPQAPPYEEWRSMSQLCGNTFCRSMEAEALQRRNNGGLLRPSITAVDGLEMPGPSSALTKSPCSGTETRSSGSPPAGLPSKPQRSPSPATGAMVATNVPSPLPETSHAPPGLSQDGVGNDD--AAPARDMRWQAGLAATAATSIPESRLSPEAADPRGVRADWSSAAAS-GQQLRLGGDTVAADAADADANHTPTIEP-VEGG-VVLWGREMTLTDADLPDAAAVFARDEALLEQGLY 954
RSN CSGVGGL YH VAYM+ V GD+ D + L A D+VLRYPGIVRFRPH IHC LA SHF RRD+YDA++GVYNS RP +APPYEEWR+++Q+C N FCRS EAE + + GL++ +++ + + GP+S KSPC G E ++ GS PA L QR P T AT VPSPLPE HAPP LS+DGV N D A ARD R Q A A IPES S EAA+ GVRA WSSAAA GQQ G+ A AA A P + P V GG + L G EM LTD DL DAAAVFA DE LLE GLY
Sbjct: 178 RSNVCSGVGGLFYHSNVAYMKTVNGDVEDLIKCLQASADIVLRYPGIVRFRPHFIHCTLAVSHFSKRRDMYDAMNGVYNSIRPPGCWRAPPYEEWRTITQICDNMFCRSFEAEIHKAHHGEGLMQTNVSDNEDVTS-GPASGSMKSPCIGAERQNGGSLPAELC---QRLPVSMT-PTDATAVPSPLPEPRHAPPSLSEDGVRNGDTGADDARDRRRQP--VAETAMLIPESVFSAEAAEAGGVRAGWSSAAAGPGQQFCSEGNNGAGGAAAAAVARNPKVGPEVWGGDMALGGSEMALTDEDLLDAAAVFASDEGLLEMGLY 493
BLAST of mRNA_E_fasciculatus_S2_contig910.17180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTD9_ECTSI) HSP 1 Score: 262 bits (670), Expect = 1.060e-77 Identity = 171/317 (53.94%), Postives = 203/317 (64.04%), Query Frame = 1
Query: 4 SNTCSGVGGLLYHGIVAYMQAVAGDLVDFFESLDACVDVVLRYPGIVRFRPHLIHCILASSHFVHRRDVYDAISGVYNSTRPTSFPQAPPYEEWRSMSQLCGNTFCRSMEAEALQRRNNGGLLRPSITAVDGLEMPGPSSALTKSPCSGTETRSSGSPPAGLPSKPQRSPSPATGAMVATNVPSPLPETSHAPPGLSQDGVGNDDAAPARDMRWQAGLAATAATSIPESRLSPEAADPRGVR-ADWSSAAASGQQLRLGGDTVAADAADADANHTPTIEPVEGGVVLWGREMTLTDADLPDAAAVFARDEALLEQGL 951
S+TCSG GG+LYHG VAYM+A+AGDL FESL ACVDVVLRYPG+VRFR HLIHC+LA+SHF +RRD+YDA+ GVYNS P +PQ PPYEEWR++ Q+C + CRSMEAE LQ + G + + P P S KS SG +++SSGSPPAGL S+ Q S +P T A AT V SPLP+T H QD GND AA DM Q GL ATA IPES S + D GVR A WS AAA+G+ R ++ AA A + E G VV G EM +TDADL D AA FA DE LLE+ L
Sbjct: 286 SDTCSGAGGVLYHGNVAYMRAIAGDLDKAFESLQACVDVVLRYPGLVRFRSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQIPPYEEWRTIRQVCPHVLCRSMEAEILQHLDEGPGQTTNASEEPVTSEPSPGSI--KSFRSGADSQSSGSPPAGLASEEQGSLAPTT-ATGATAVSSPLPDTPHTLATFVQDVDGNDGAATG-DMPLQRGLVATA-MPIPESVYSAKG-DTGGVRHAGWSRAAATGEHPR------SSTAAPAPGSPKIGFEWWGGEVVSGGAEMNMTDADLLDIAAAFANDEGLLEEEL 590
BLAST of mRNA_E_fasciculatus_S2_contig910.17180.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTE0_ECTSI) HSP 1 Score: 263 bits (671), Expect = 5.670e-76 Identity = 169/317 (53.31%), Postives = 204/317 (64.35%), Query Frame = 1
Query: 4 SNTCSGVGGLLYHGIVAYMQAVAGDLVDFFESLDACVDVVLRYPGIVRFRPHLIHCILASSHFVHRRDVYDAISGVYNSTRPTSFPQAPPYEEWRSMSQLCGNTFCRSMEAEALQRRNNGGLLRPSITAVDGLEMPGPSSALTKSPCSGTETRSSGSPPAGLPSKPQRSPSPATGAMVATNVPSPLPETSHAPPGLSQDGVGNDDAAPARDMRWQAGLAATAATSIPESRLSPEAADPRGVR-ADWSSAAASGQQLRLGGDTVAADAADADANHTPTI--EPVEGGVVLWGREMTLTDADLPDAAAVFARDEALLEQ 945
S+TCSGVGG+LYHG VAYM+A+AGDL FESL ACVDVVLRYPG+VRFR HLIHC+LA+SHF +RRD+YDA+ GVYNS P +PQ PPYEEWR++ Q+C + CRSMEAE LQR G + + + P P S SP SG +++SSG+PP GL S+ Q S +P T A AT V SPLP+T H QD GND AA DM Q GL ATA IPE S + + GVR A WS AAA+G+Q+R + A A +P I + G VV G EM +TDADL D AA FA DE LLE+
Sbjct: 503 SDTCSGVGGVLYHGNVAYMRAIAGDLDKSFESLQACVDVVLRYPGLVRFRSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQIPPYEEWRTIRQVCPHVMCRSMEAERLQRYGEGPVQTNAPSEEPVTSEPSPGSMT--SPLSGADSQSSGAPPEGLASEEQGSLAPTT-ATGATAVSSPLPDTPHTSATFVQDVDGNDGAATG-DMPLQRGLVATA-MPIPELVYSAKG-EAGGVRHAGWSRAAATGEQVR--------SSTTAPAPGSPKIGFKWWGGEVVSGGAEMNMTDADLLDIAAAFANDEGLLEE 805
BLAST of mRNA_E_fasciculatus_S2_contig910.17180.1 vs.
Match: Zn(2)-C6 (fungal-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0W7_9PHAE) HSP 1 Score: 248 bits (632), Expect = 2.510e-70 Identity = 165/319 (51.72%), Postives = 199/319 (62.38%), Query Frame = 1
Query: 4 SNTCSGVGGLLYHGIVAYMQAVAGDLVDFFESLDACVDVVLRYPGIVRFRPHLIHCILASSHFVHRRDVYDAISGVYNSTRPTSFPQAPPYEEWRSMSQLCGNTFCRSMEAEALQRRNNGGLLRPSITAVDGLEMPGPSSALTKSPCSGTETRSSGSPPAGLPSKPQRSPSPATG-AMVATNVPSPLPETSHAPPGLSQDGVGNDDAAPARDMRWQAGLAATAATSIPESRLSP--EAADPRGVRADWSSAAASGQQLRLGGDTVAADAADADANHTPTIEPVEGGVVLWGREMTLTDADLPDAAAVFARDEALLEQGL 951
S+TCSGVGG+LYHG VAYM+AVAG+LV FESL+ACVDVVLRYPG+VRF+ HLIHC+LA+SHF +RRD+YDA+ VYNS P +PQAPPYEEWR++ Q+C + CRS+E E Q + G L++ + D E P S L S SG++++SSG PPAGL A T V SPLP H P DG GND A+ A DM Q GL ATA T IPES S EA D R ADW AAA+G++ R G A A + +E G VV EM +TDADL D AAVFA DE LLE+ L
Sbjct: 506 SDTCSGVGGVLYHGNVAYMRAVAGELVKAFESLEACVDVVLRYPGLVRFKSHLIHCMLAASHFFNRRDMYDAMKRVYNSVGPMGYPQAPPYEEWRTIRQVCPHILCRSLEVELHQHLDEG-LVQANAAPKDP-ETSEPLSGLFNSTLSGSDSQSSGPPPAGLAXXXXXXXXXXXXTATGVTAVSSPLPAPPHTFPTFMPDGGGNDGAS-AGDMPLQPGLVATA-TLIPESVYSAKGEAGDVR--HADWLHAAATGERPRSG------TGARAPGSPKIGLEWWGGDVVSGEAEMNMTDADLLDIAAVFANDEGLLEEEL 812
BLAST of mRNA_E_fasciculatus_S2_contig910.17180.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0K0_9PHAE) HSP 1 Score: 225 bits (574), Expect = 5.820e-62 Identity = 162/334 (48.50%), Postives = 190/334 (56.89%), Query Frame = 1
Query: 49 VAYMQAVAGDLVDFFESLDACVDVVLRYPGIVRFR--PHLIHCILASSHFVHRRDVYDAISGVYNSTRPTSFPQAPPYEEWRSMSQLCGNTFC-------------------------------RSMEAEALQRRNNGGLLRPSITAVDGLEMPGPSSALTKSPCSGTETRSSGSPPAGLPSKPQRSPSPATGAMVATNVPSPLPETSHAPPGLSQDGVGNDDAAPARDMRWQAGLAATAATSIPESRLSPEAADPRGVRADWSSAAASGQQLRLGGDTVAADAADADANHTPTI--EPVEGGVVLWGREMTLTDADLPDAAAVFARDEALLEQ 945
VAYM+AVAG+LV FESL+ACVDVVLRYPG+VRFR HLIHC+LA+SHF +RRD+YDA+ GVYNS P +PQ PPYEEWR++ Q+C + C RSME E LQR G + + A + L M S SP SG +T+SSG+PP GL S+ Q S +P T A+ T V SPLPE SH DG NDDAA ARDM Q GL ATA IPE S + RADWS AAA+G Q R G A D +P I E G VV EM +TDADL D AAVFA DE LLE+
Sbjct: 517 VAYMRAVAGELVKAFESLEACVDVVLRYPGLVRFRRTSHLIHCMLAASHFFNRRDMYDAMRGVYNSVGPMGYPQVPPYEEWRTIRQVCPHILCSFRTDLLPPRCSNVFGVFRRIRPHSFVAPVKRSMEVERLQRYGEGPV--QTNAASEELVMSEALSGSITSPLSGADTKSSGAPPGGLASEEQGSLAP-TRAIGGTAVSSPLPEFSHTLATFVPDGGRNDDAA-ARDMPLQPGLVATA-MPIPEPVYSAKGEAGGVRRADWSGAAATGGQPRSGTGARAPD--------SPKIGFEWWGGDVVSGEAEMNMTDADLLDIAAVFANDEGLLEE 837
BLAST of mRNA_E_fasciculatus_S2_contig910.17180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LHU1_9PHAE) HSP 1 Score: 115 bits (288), Expect = 6.570e-26 Identity = 107/275 (38.91%), Postives = 128/275 (46.55%), Query Frame = 1
Query: 151 RPHLIHCILASSHFVHRRDVYDAISGVYNSTRPTSFPQAPPYEEWRSMSQLCGNTFCRSMEAEALQRRNNGGLLRPSITAVDGLEMPGPSSALTKSPCSGTETRSSGSPPAGLPSKPQRSPSPATGAMVATNVPSPLPETSHAPPGLSQDGVGNDDAAP--ARDMRWQAGLAATAATSIPESRLSPEAADPRGVRADWSSAAASGQQLRLGGDTVAAD----AADADANHTPTIEP-VEGG-VVLWGREMTLTDADLPDAAAVFARDEALLEQGL 951
RPH IHC LA SH RRDVYDA+S + EAE + G L+ +++ + + GP+S SPC G E ++SGS PA L S QR P+P T AT VPSPLP+ HAPP LS+DGVG+DD A ARD+RWQ A A PES EAA+ G A A + PT+ P V GG + L G EM LTD L DAA VFA DE LLE L
Sbjct: 5 RPHFIHCTLAVSHLSKRRDVYDAVSVAF-------------------------------FEAEIYNAHHGEGPLQTNLSGDEDVTF-GPASGSMNSPCIGEERQNSGSLPAELASGEQRFPAPMT-PTDATAVPSPLPKLPHAPPSLSEDGVGDDDTAADDARDIRWQP--VAETAMLTPESAA--EAAEAGGACAXXXXXXXXXXXXXXXXXXXXXXXXXXGAPSAVARNPTVGPEVWGGDMALGGSEMALTDEYLLDAATVFASDEVLLEMTL 242
BLAST of mRNA_E_fasciculatus_S2_contig910.17180.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FY46_ECTSI) HSP 1 Score: 71.2 bits (173), Expect = 2.950e-10 Identity = 42/137 (30.66%), Postives = 68/137 (49.64%), Query Frame = 1
Query: 22 VGGLLYHGIVAYMQAV------AGDLVDFFESLDACVDVVLRYPGIVRFR--PHLIHCILASSHFVHRRDVYDAISGVYNSTRPTSFPQAPPYEEWRSMSQLCGNTFCRSME--------AEALQRRNNGGLLRPSI 384
VG LLY+ ++ +Q V GD+ D E++ + V+LR+PG+ R++ HL H L R+ Y+ + YN RP+ P P +E W+ MS +C + CR E A+ + + G LL P++
Sbjct: 116 VGRLLYYMNLSLLQLVNHGRGGGGDVADAVEAVQRGLRVILRFPGLCRYKCWSHLCHTQLWCLALGPDREPYEELRAAYNPVRPSGSPLVPAFEHWQGMSDICNHVHCRRGERMGFAPSVADCVAKLTPGVLLLPTL 252 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig910.17180.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig910.17180.1 >prot_E_fasciculatus_S2_contig910.17180.1 ID=prot_E_fasciculatus_S2_contig910.17180.1|Name=mRNA_E_fasciculatus_S2_contig910.17180.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=301bp MQAVAGDLVDFFESLDACVDVVLRYPGIVRFRPHLIHCILASSHFVHRRDback to top mRNA from alignment at E_fasciculatus_S2_contig910:17713..20421- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig910.17180.1 ID=mRNA_E_fasciculatus_S2_contig910.17180.1|Name=mRNA_E_fasciculatus_S2_contig910.17180.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2709bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig910:17713..20421- (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig910:17713..20421- >mRNA_E_fasciculatus_S2_contig910.17180.1 ID=mRNA_E_fasciculatus_S2_contig910.17180.1|Name=mRNA_E_fasciculatus_S2_contig910.17180.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=903bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig910:17713..20421- (Ectocarpus fasciculatus EfasUO2)back to top |