mRNA_E_fasciculatus_S2_contig9086.17166.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9086.17166.1
Unique NamemRNA_E_fasciculatus_S2_contig9086.17166.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9086.17166.1 vs.
Match: Putative (Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FM46_ECTSI)

HSP 1 Score: 256 bits (654), Expect = 3.980e-76
Identity = 155/226 (68.58%), Postives = 165/226 (73.01%), Query Frame = 1 
Query:   91 LQKLNHLKVFMVDWRELCDTHPFRNFRKACPPPTQAEMDRALCESRTIARARTLMSARAAASPPAPANLGQQQQIPPGYPGAATGLTH--PASNPETPVSSNGGGIPRGGGG----SRFKVLLGGGSSGSRNDTPSRLARARTAVGQPVPGGAAYDAGGEWGGGDGDGRARGNSGMFRVDEGVGGPVGGGGGQWMNAHPHQQYPAVGVPYNAPTAPYRGEDGVSAK 750
            LQKLNHLK+FMVDWREL DTHPFRNFRKA PPPTQAEMDRALCESRTIARARTLMSARAA  PPAP N   QQQIPPGYPGAA GL+H  P SNP+TP+SSNG              RFKV+L GGSSGSR+DTPSRL RA +AV  PV G AAY  G EW GG GDGRA GNSG              GGGQWMNAH HQ YP    PY+ PTAPYRGEDG+ +K
Sbjct:  603 LQKLNHLKIFMVDWRELSDTHPFRNFRKASPPPTQAEMDRALCESRTIARARTLMSARAAC-PPAPTNP-NQQQIPPGYPGAAAGLSHSNPGSNPQTPISSNGXXXXXXXXXXXXXDRFKVMLRGGSSGSRSDTPSRLGRATSAVEGPVSG-AAYGGGEEWVGG-GDGRAPGNSGD-------------GGGQWMNAHQHQ-YPGAAAPYHTPTAPYRGEDGIQSK 810
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BLAST of mRNA_E_fasciculatus_S2_contig9086.17166.1 vs.
Match: Protein (kinase domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5H1_9PHAE)

HSP 1 Score: 228 bits (581), Expect = 6.830e-65
Identity = 140/228 (61.40%), Postives = 153/228 (67.11%), Query Frame = 1 
Query:   91 LQKLNHLKVFMVDWRELCDTHPFRNFRKACPPPTQAEMDRALCESRTIARARTLMSARAAASPPAPANLGQQQQIPPGYPGAATGLTH--PASNPETPVSSNGGGIPRGGGGS----RFKVLLGGGSSGSRNDTPSRLARARTAVGQPVPGGAAYDAGGEWGGGDGDGRARGNSGMFRVDEGVGGPVGGGGGQWMNAHPHQQYPAVGVPYNAPTAPYRGEDGVSAKGR 756
            L+KLNHLKVF+VDWREL DTHPFRNFRKA PPPTQAEMDRALCESRTIARARTLMSARAAASPPAP NL  QQQIPPGYPGAA GL+H  P SN +TP+SSNG              RF+V+L GGSSGSRN+TPSRL RAR+    PVPG AAYD G EW GG                                 H H QYP    PY+APTAPYRGEDG+ +K +
Sbjct:  861 LRKLNHLKVFVVDWRELSDTHPFRNFRKASPPPTQAEMDRALCESRTIARARTLMSARAAASPPAPTNL-NQQQIPPGYPGAAAGLSHSNPGSNLQTPISSNGXXXXXXXXXXXXXXRFEVMLRGGSSGSRNNTPSRLVRARSTGEGPVPG-AAYDGGEEWVGGGXXXXXXXXXXXXXXX--------------XXXH-HHQYPGAAAPYHAPTAPYRGEDGILSKAK 1071
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9086.17166.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Putative3.980e-7668.58Leucine Rich Repeat Protein Kinase n=1 Tax=Ectocar... [more]
Protein6.830e-6561.40kinase domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9086contigE_fasciculatus_S2_contig9086:4142..6009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start0
Model size764
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionPutative Leucine Rich Repeat Protein Kinase
Ec32 orthologEc-01_010620.1
Cds size762
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842561.5082705-CDS-E_fasciculatus_S2_contig9086:4141..42141696842561.5082705-CDS-E_fasciculatus_S2_contig9086:4141..4214Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9086 4142..4214 +
1696842561.517732-CDS-E_fasciculatus_S2_contig9086:4737..48091696842561.517732-CDS-E_fasciculatus_S2_contig9086:4737..4809Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9086 4738..4809 +
1696842561.526621-CDS-E_fasciculatus_S2_contig9086:5392..60091696842561.526621-CDS-E_fasciculatus_S2_contig9086:5392..6009Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9086 5393..6009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9086.17166.1prot_E_fasciculatus_S2_contig9086.17166.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9086 4142..6009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9086.17166.1

>prot_E_fasciculatus_S2_contig9086.17166.1 ID=prot_E_fasciculatus_S2_contig9086.17166.1|Name=mRNA_E_fasciculatus_S2_contig9086.17166.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=254bp
GAIPAGLSGAVSLERLHLQCNGFTGNLPRSLQKLNHLKVFMVDWRELCDT
HPFRNFRKACPPPTQAEMDRALCESRTIARARTLMSARAAASPPAPANLG
QQQQIPPGYPGAATGLTHPASNPETPVSSNGGGIPRGGGGSRFKVLLGGG
SSGSRNDTPSRLARARTAVGQPVPGGAAYDAGGEWGGGDGDGRARGNSGM
FRVDEGVGGPVGGGGGQWMNAHPHQQYPAVGVPYNAPTAPYRGEDGVSAK
GRRK
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mRNA from alignment at E_fasciculatus_S2_contig9086:4142..6009+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9086.17166.1 ID=mRNA_E_fasciculatus_S2_contig9086.17166.1|Name=mRNA_E_fasciculatus_S2_contig9086.17166.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=1868bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9086:4142..6009+ (Ectocarpus fasciculatus EfasUO2)
GGGGCGATCCCTGCCGGCCTGTCGGGAGCGGTGTCCCTCGAGAGATTGCA
CCTCCAGTGCAATGGCTTTACCGGTGGGTGGCCCGACTCGATCTACCGTA
TCTATCTAGCTTGCGTAAGACACGACCCTCCCTCCCCTGGACGCTAGCCT
TCGCAGGGTTTCGCCATTCAGGAAACATGTTGGACAAAGCATACAATCGG
GGGAGTTGGGTCAGAGTTAGGGAGGACTAGGGAATAGGGTCTGCGTATCC
CCTTCCCGTTGTAATTACTCACAATACTTTGCTTGCCGCGAAGACGGTTC
TCCCTGGTCGGGTTGGCTTGAGCATGAGACAGCCACGGCGGTGCCTACTG
TACGATGACGGCGTTTGAACCGTCTCGTCGAGAGCTTTTCCGAAGACTCG
TCGTTTGATTTTGGGGATGATCCTCGTGGTCGTAGAGCGATGTATTCGAG
CTCGTTTGCTGCACCTATATTCTGTGTAGTGGCATTATGCACGTTTGATT
GGGGAGCCTTGTGACACTGACCCAAACTCCCAACTCGTGTTTTGATTGGG
GGCCCTCGTGAAACTGACCCAAATTCTCGCGGACACGCATTTGCAGGGAA
CTTGCCGAGATCTCTCCAGAAGCTGAACCACCTCAAGGTCTTCATGGTGG
ACTGGAGGGAGCTTTGCGGTACGCAGTAGTAGTGTAAATCGGGTCGTTGA
TCTGCCCTTTACATCTTTGTAGGGATGCTGTAAACGCGCACAGACTTGGA
GCATTCCGTCGCTACTTCACGTACCCACGGAGAAGGAGAGGGGCATATGG
CATGACTCGAGCAAGGAACGTTGTGTAACAGCGTATGGCATCCACCCTCC
TGTAAATACCAATGCCCCCTTGGGCGAAACAAGAACACACGCGTGGTATG
CGTGTACAAGTATGAATATTTCAGTAAAAAGGGGAGCCGCTGCTGTTGTC
GGTAGGGGGTAGGAAGGTAGGAACACCCCGTCTCCCAATGTAGGCGTGGC
AGGAGGCCAAACGACTCAGCAACCAACCGAGAGCTGTTGCGTTGCTCCCC
CCCCCCCCCCCCCCCCCCCCCCCCACCCCCCCCCCCTCCCCCACTCCCCC
CACCCCCCCCCCCCCCCCCCCCCCCCCGCGACCCCCCNNNNNNNNNNCCC
CGTCTCCCAATGTAGGGGTGGCTGGGGCCCAAACCACCCACCAACCAACC
GAGAGCTGTTGCGTTGCCCCCCCCCCCCCCCCCTCCCCTCCCGACTCGCA
GACACCCACCCCTTCCGGAATTTCCGCAAGGCCTGCCCACCGCCGACCCA
GGCGGAGATGGACCGGGCCCTCTGCGAGTCGCGCACGATCGCCCGCGCGC
GCACCCTCATGTCGGCCCGGGCGGCGGCATCCCCCCCTGCTCCCGCGAAC
CTCGGCCAGCAGCAGCAGATCCCGCCCGGGTACCCGGGAGCGGCGACGGG
TTTAACCCACCCGGCTTCGAACCCGGAAACTCCGGTCTCGTCTAACGGGG
GCGGCATTCCTCGTGGCGGCGGCGGCAGCAGGTTTAAGGTGTTGCTTGGC
GGCGGCTCCTCGGGCTCGCGGAACGACACTCCGTCGAGGCTGGCCAGGGC
GAGGACGGCGGTCGGCCAGCCGGTGCCCGGCGGCGCGGCGTACGACGCGG
GGGGGGAGTGGGGCGGCGGCGACGGCGACGGGAGGGCCCGGGGAAACAGC
GGGATGTTCCGCGTCGATGAAGGCGTAGGGGGTCCCGTCGGCGGGGGCGG
AGGGCAGTGGATGAACGCCCACCCCCACCAGCAGTACCCCGCGGTAGGGG
TCCCGTACAATGCTCCCACGGCACCGTACCGTGGAGAGGACGGGGTAAGT
GCGAAGGGAAGAAGGAAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9086:4142..6009+

>mRNA_E_fasciculatus_S2_contig9086.17166.1 ID=mRNA_E_fasciculatus_S2_contig9086.17166.1|Name=mRNA_E_fasciculatus_S2_contig9086.17166.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=762bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9086:4142..6009+ (Ectocarpus fasciculatus EfasUO2)
GGGGCGATCCCTGCCGGCCTGTCGGGAGCGGTGTCCCTCGAGAGATTGCA
CCTCCAGTGCAATGGCTTTACCGGGAACTTGCCGAGATCTCTCCAGAAGC
TGAACCACCTCAAGGTCTTCATGGTGGACTGGAGGGAGCTTTGCGACACC
CACCCCTTCCGGAATTTCCGCAAGGCCTGCCCACCGCCGACCCAGGCGGA
GATGGACCGGGCCCTCTGCGAGTCGCGCACGATCGCCCGCGCGCGCACCC
TCATGTCGGCCCGGGCGGCGGCATCCCCCCCTGCTCCCGCGAACCTCGGC
CAGCAGCAGCAGATCCCGCCCGGGTACCCGGGAGCGGCGACGGGTTTAAC
CCACCCGGCTTCGAACCCGGAAACTCCGGTCTCGTCTAACGGGGGCGGCA
TTCCTCGTGGCGGCGGCGGCAGCAGGTTTAAGGTGTTGCTTGGCGGCGGC
TCCTCGGGCTCGCGGAACGACACTCCGTCGAGGCTGGCCAGGGCGAGGAC
GGCGGTCGGCCAGCCGGTGCCCGGCGGCGCGGCGTACGACGCGGGGGGGG
AGTGGGGCGGCGGCGACGGCGACGGGAGGGCCCGGGGAAACAGCGGGATG
TTCCGCGTCGATGAAGGCGTAGGGGGTCCCGTCGGCGGGGGCGGAGGGCA
GTGGATGAACGCCCACCCCCACCAGCAGTACCCCGCGGTAGGGGTCCCGT
ACAATGCTCCCACGGCACCGTACCGTGGAGAGGACGGGGTAAGTGCGAAG
GGAAGAAGGAAA
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