mRNA_E_fasciculatus_S2_contig9084.17164.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9084.17164.1
Unique NamemRNA_E_fasciculatus_S2_contig9084.17164.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9084.17164.1 vs.
Match: Beta-Casp (domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKR5_ECTSI)

HSP 1 Score: 169 bits (427), Expect = 1.290e-42
Identity = 109/153 (71.24%), Postives = 123/153 (80.39%), Query Frame = 2 
Query:  482 REGGARVKATG-MDVDAEG-AATLSSKIKTELGEEGGPTA-GGRGADAADAKAGKTENSSA-GKGAASGGRERAKSPACGVGRAEDEEASASASVHAARPTTAAPRRGDGATGEEREYSDRLSVLAAALLLVRHAMQDTFGKGAVTVTSKNKK 928
            RE GARVKATG M VD  G AATLSSK+KTE+GEEGGP A GGRG   A A+A KTE+SSA G+GAA+G RER KSP+  V     +EA ASASVH A+PT AAPRRGDGA GE++E SD  S+LAAALLL+RHAMQDTFGKGAVTVTSK+KK
Sbjct:  510 REEGARVKATGGMGVDEGGVAATLSSKVKTEVGEEGGPPALGGRGTGVAGARAVKTESSSAAGEGAAAGDRERTKSPSGSVAGRAGDEARASASVHTAKPTAAAPRRGDGAAGEDQEGSDWSSMLAAALLLIRHAMQDTFGKGAVTVTSKHKK 662
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9084.17164.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L755_9PHAE)

HSP 1 Score: 160 bits (406), Expect = 1.620e-39
Identity = 106/154 (68.83%), Postives = 116/154 (75.32%), Query Frame = 2 
Query:  464 GGCTRGREGGARVKATG-MDVDAEGAA--TLSSKIKTELGEEGGP-TAGGRGADAADAKAGKTENSSAG-KGAASGGRERAKSPACGVGRAEDEEASASASVHAARPTTAAPRRGDGATGEEREYSDRLSVLAAALLLVRHAMQDTFGKGAVTV 910
            G C R RE GARVKATG M VD  GAA  TLSSK+KTE+GEE GP  +GGRG   A A+A KTE SS   K AA+GG+ R KSPA GV     +EAS SASVH A+PTTA PRRGDGA GE+RE SD  S+LAAALLLVRHAMQDTFGKGAVTV
Sbjct:  702 GDCARDREEGARVKATGGMGVDEGGAAAATLSSKVKTEVGEEEGPPVSGGRGTGVAGARAVKTEGSSTALKEAAAGGQGRTKSPAGGVAGRAGDEASGSASVHTAKPTTAVPRRGDGAAGEDREGSDWSSMLAAALLLVRHAMQDTFGKGAVTV 855
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9084.17164.1 vs.
Match: Cleavage (and polyadenylation specificity factor subunit 3 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKW9_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 3.310e-5
Identity = 32/72 (44.44%), Postives = 39/72 (54.17%), Query Frame = 3 
Query:  201 RLVVHGAVAATLPPPSAADSRTKLLLEWDASPVNDMLVDSMVALATQAQTQVRSHPGFIYARIPAAISLTTS 416
            R+ VHGA      PP   D    L+ EW ASPVNDM+ DS++ALA QAQT             P AI LT++
Sbjct:  539 RMSVHGAAVTVDYPPVQQDGAASLVFEWSASPVNDMIADSLIALAMQAQTT------------PGAIRLTSA 598
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9084.17164.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
Beta-Casp1.290e-4271.24domain-containing protein n=1 Tax=Ectocarpus silic... [more]
Uncharacterized1.620e-3968.83protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Cleavage3.310e-544.44and polyadenylation specificity factor subunit 3 n... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9084contigE_fasciculatus_S2_contig9084:1456..3559 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score159.8
Seed ortholog evalue1.1e-36
Seed eggNOG ortholog2880.D8LKR5
Model size1206
KEGG koko:K14403
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003676,GO:0003723,GO:0003729,GO:0003730,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005847,GO:0005849,GO:0006139,GO:0006378,GO:0006379,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0017091,GO:0031123,GO:0031124,GO:0031974,GO:0031981,GO:0032991,GO:0034641,GO:0035925,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043631,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0070013,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0097159,GO:0098787,GO:0098789,GO:1901360,GO:1901363
Exons4
EggNOG free text desc.nuclease activity
EggNOG OGsCOG1236@1,KOG1137@2759
Cds size492
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko03021
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9084.17164.1prot_E_fasciculatus_S2_contig9084.17164.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9084 1656..2147 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842561.4257894-UTR-E_fasciculatus_S2_contig9084:1455..16551696842561.4257894-UTR-E_fasciculatus_S2_contig9084:1455..1655Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9084 1456..1655 -
1696842561.4491463-UTR-E_fasciculatus_S2_contig9084:2147..22731696842561.4491463-UTR-E_fasciculatus_S2_contig9084:2147..2273Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9084 2148..2273 -
1696842561.4577816-UTR-E_fasciculatus_S2_contig9084:2437..25661696842561.4577816-UTR-E_fasciculatus_S2_contig9084:2437..2566Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9084 2438..2566 -
1696842561.4713414-UTR-E_fasciculatus_S2_contig9084:2983..31701696842561.4713414-UTR-E_fasciculatus_S2_contig9084:2983..3170Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9084 2984..3170 -
1696842561.482823-UTR-E_fasciculatus_S2_contig9084:3487..35591696842561.482823-UTR-E_fasciculatus_S2_contig9084:3487..3559Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9084 3488..3559 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842561.4398432-CDS-E_fasciculatus_S2_contig9084:1655..21471696842561.4398432-CDS-E_fasciculatus_S2_contig9084:1655..2147Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9084 1656..2147 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9084.17164.1

>prot_E_fasciculatus_S2_contig9084.17164.1 ID=prot_E_fasciculatus_S2_contig9084.17164.1|Name=mRNA_E_fasciculatus_S2_contig9084.17164.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=164bp
MDVDAEGAATLSSKIKTELGEEGGPTAGGRGADAADAKAGKTENSSAGKG
AASGGRERAKSPACGVGRAEDEEASASASVHAARPTTAAPRRGDGATGEE
REYSDRLSVLAAALLLVRHAMQDTFGKGAVTVTSKNKKPAPPRCRRRPRP
GSRLRPTSRYRRK*
back to top

mRNA from alignment at E_fasciculatus_S2_contig9084:1456..3559-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9084.17164.1 ID=mRNA_E_fasciculatus_S2_contig9084.17164.1|Name=mRNA_E_fasciculatus_S2_contig9084.17164.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2104bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9084:1456..3559- (Ectocarpus fasciculatus EfasUO2)
CAAGAGGCTCATGCCGACGGACGAGCTGGACGAGTACACGCTGGTCAGAG
AGAGAGAGGGAGGACGAGGGAGGTAGGCTGCAGCAGCAGGTTTTCTTTCT
TTCGTGAAGTTTTTTCGTGGAGGTTGAAACGCGGCCGGGCACCCGGAGAA
CAGCGGTCGTGGAGAGCTTGAGGCCCGACGATAGACCTAGACCGCTCGTT
TCATTCACCTGCCTCCCGCCCAAGGGAATTTCACCTCTCTCTCTCTCTCT
CTCTGACCCAAAACTTGTCGTCCAACGTGACCGCTGCCTACTATCATGAA
CACACACAATACAACCATCCCGTCTGTTTCTCCCCCGCCTGCGGACTGAC
TGCAACACCATGTACGCATGTGTCTACTTTTCTATGCAGCTCAAGGTTGT
GAGAGTCTGGCAGCGGCTGTCGGTGCCGTACTTCTCCTCCGCGGAGGCTC
TCCGGGCTTTCGTGAGGGAGGTGTTCGCCGACGACAGCATCACGCAGGAG
GAGGGGGAGTCGGCACCAGGCTCGTCGTTCACGGGGCTGTGGCGGCCACT
CTGCCACCTCCCAGCGCTGCCGACAGGTGCAAACAACATCGCTGCCCTCG
CGCGTCGATATTAGTCCGCGTGTGCGTGTGCGCGCGGGGAGTATGGGTGT
ATATGCATACAAGTACACGATGGGCGCGCTTGACGCATGCTCGTGACAAG
TTGTGCAGACGTGGTTTTTTGTCTCAAGGACGTTCGCCGAGATGGTTCGA
AAGCTCAGTCGGTCGGCGCGTTGCTTTGTGTCCTCATTATCACTTCATGC
GGTGCGCCCACGTATCTGGTGTGCCCAGGCCACAAAGAATCGCGATGTTG
GTCGAGTGACACTATCCGGCCGAGATGTCTTCGAGGATTACCCCCTCCTT
GCACGACATCCTGGCGTTCTACATGCTAGACCACTTAAAAAATGTCCTGC
ATTTTTCACTGCACCCTCCATTTCAACGTCAATGGCCGCCGAGCAGGACC
AAGCTTCTGCTTGAGTGGGATGCCAGCCCCGTCAACGACATGCTCGTGGA
CTCAATGGTGGCGCTCGCAACCCAGGCGCAGACCCAGGTACGTTCCCACC
CGGGATTTATTTATGCTCGCATGTTTTTATCGCTCACCACAATTTCCAGC
TGCCTCAACTTGTTTCTCGTGGTGGGTGGTTTTCTCTTGTGTGATGCGAT
GCCCTCTCTAGCAGTAGCTAGTCCCGCTTTTCTCTGAGCATCGCGTGAGG
CGGCGTTGACGTTTGCCGAACCGACTGCTAAACCAGCCCGGCCGCCATTT
CGCTCACAACCAGCGGGCACCATCACCATCATCACCACCACCACCACACC
ATCACAAACGCGGGGGTTGTACTAGAGGCAGAGAAGGGGGTGCACGCGTC
AAGGCTACGGGCATGGATGTAGATGCAGAGGGTGCTGCAACGTTGTCCTC
GAAGATCAAGACTGAGCTGGGAGAGGAAGGAGGCCCAACAGCGGGAGGAA
GAGGAGCTGATGCTGCTGATGCCAAAGCAGGCAAGACGGAAAATTCATCC
GCGGGAAAGGGAGCGGCGTCAGGGGGTCGAGAGAGGGCCAAATCACCAGC
ATGCGGTGTTGGCCGGGCGGAAGACGAAGAAGCCAGCGCATCTGCTTCGG
TTCATGCAGCGCGACCTACGACGGCGGCACCTCGCCGCGGCGATGGTGCT
ACCGGAGAAGAACGAGAGTATAGCGACCGGTTGTCGGTGCTCGCGGCAGC
GCTGCTGCTCGTACGCCACGCGATGCAAGACACTTTCGGGAAGGGGGCGG
TAACTGTGACATCGAAGAACAAGAAGCCAGCGCCGCCCCGCTGCCGCCGC
CGGCCGCGGCCGGGAAGCAGGCTTCGTCCGACAAGCCGCTATCGGCGGAA
ATAAAGATCGAGACGGATGGTGCAGTCGCTCGGTTGCGAGTTTACGTGGC
CCCCTCTGCGAGCACCGCTGTGGCCGGGTTCGGGGAAAGCGGAGGCGGAG
GGTCGGCTGGGTGGCGCTGCGAGGTGGTGGAGTGCACGAGAGATTCCCTT
GGGAGCCAGATCTCGATGCTCGTCGAACGGCTGAGGGCGCCTGTTTCAAG
GAGC
back to top

Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9084:1456..3559-

>mRNA_E_fasciculatus_S2_contig9084.17164.1 ID=mRNA_E_fasciculatus_S2_contig9084.17164.1|Name=mRNA_E_fasciculatus_S2_contig9084.17164.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=492bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9084:1456..3559- (Ectocarpus fasciculatus EfasUO2)
ATGGATGTAGATGCAGAGGGTGCTGCAACGTTGTCCTCGAAGATCAAGAC
TGAGCTGGGAGAGGAAGGAGGCCCAACAGCGGGAGGAAGAGGAGCTGATG
CTGCTGATGCCAAAGCAGGCAAGACGGAAAATTCATCCGCGGGAAAGGGA
GCGGCGTCAGGGGGTCGAGAGAGGGCCAAATCACCAGCATGCGGTGTTGG
CCGGGCGGAAGACGAAGAAGCCAGCGCATCTGCTTCGGTTCATGCAGCGC
GACCTACGACGGCGGCACCTCGCCGCGGCGATGGTGCTACCGGAGAAGAA
CGAGAGTATAGCGACCGGTTGTCGGTGCTCGCGGCAGCGCTGCTGCTCGT
ACGCCACGCGATGCAAGACACTTTCGGGAAGGGGGCGGTAACTGTGACAT
CGAAGAACAAGAAGCCAGCGCCGCCCCGCTGCCGCCGCCGGCCGCGGCCG
GGAAGCAGGCTTCGTCCGACAAGCCGCTATCGGCGGAAATAA
back to top