mRNA_E_fasciculatus_S2_contig907.17154.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig907.17154.1
Unique NamemRNA_E_fasciculatus_S2_contig907.17154.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig907.17154.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig907contigE_fasciculatus_S2_contig907:6779..11122 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop0
Start1
Model size1022
Hectar predicted targeting categorysignal peptide
Exons7
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-23_000400.1
Cds size1020
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig907.17154.1prot_E_fasciculatus_S2_contig907.17154.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig907 6779..11122 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842560.4479504-CDS-E_fasciculatus_S2_contig907:6778..68771696842560.4479504-CDS-E_fasciculatus_S2_contig907:6778..6877Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig907 6779..6877 +
1696842560.4578648-CDS-E_fasciculatus_S2_contig907:7375..74181696842560.4578648-CDS-E_fasciculatus_S2_contig907:7375..7418Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig907 7376..7418 +
1696842560.4668772-CDS-E_fasciculatus_S2_contig907:7988..80851696842560.4668772-CDS-E_fasciculatus_S2_contig907:7988..8085Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig907 7989..8085 +
1696842560.4804862-CDS-E_fasciculatus_S2_contig907:8494..88111696842560.4804862-CDS-E_fasciculatus_S2_contig907:8494..8811Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig907 8495..8811 +
1696842560.4935248-CDS-E_fasciculatus_S2_contig907:9106..91871696842560.4935248-CDS-E_fasciculatus_S2_contig907:9106..9187Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig907 9107..9187 +
1696842560.5049605-CDS-E_fasciculatus_S2_contig907:9711..97341696842560.5049605-CDS-E_fasciculatus_S2_contig907:9711..9734Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig907 9712..9734 +
1696842560.5159707-CDS-E_fasciculatus_S2_contig907:10762..111221696842560.5159707-CDS-E_fasciculatus_S2_contig907:10762..11122Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig907 10763..11122 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig907.17154.1

>prot_E_fasciculatus_S2_contig907.17154.1 ID=prot_E_fasciculatus_S2_contig907.17154.1|Name=mRNA_E_fasciculatus_S2_contig907.17154.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=340bp
MRALQRIMLGALLARLGLSVTEEGTTSEQCTYQFRANRTLFALETTTLVD
YHGVVLAPGNVLAAYFSDIPYPKGGANISGASLFVIPTFSTSSSTLLEAA
VALGRGNATATIDSEGADSVSASPEDGDDVPRNSSHLESQGTVNGWSLSD
TQSSEGRSLEWEACRYYEVGNIREGVQTAISHPALANLSKEVEVFVRHHS
GPNAFIEGNSDTYVNHIVLQIRSDCGWNLNTGESSYKFDESLENNPSGDP
AWTYSLSSSTYSYGDFTTDAGVEPGYSRNYYSGGTSAANVAGPIENGRRH
ALCGGEYLDNCDLGPYSPSDVGDGSCQQHLNTEGCHYDGG
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mRNA from alignment at E_fasciculatus_S2_contig907:6779..11122+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig907.17154.1 ID=mRNA_E_fasciculatus_S2_contig907.17154.1|Name=mRNA_E_fasciculatus_S2_contig907.17154.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=4344bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig907:6779..11122+ (Ectocarpus fasciculatus EfasUO2)
ATGAGGGCGCTCCAACGGATTATGCTCGGCGCTCTGCTGGCACGGTTGGG
GCTGTCAGTGACAGAGGAAGGCACAACCAGCGAGCAGTGCACCTACCAGG
TGATACTCTCATAGTCTAGTTAATCATCGACAGGGCCAGAGGGTGTGTCC
TCGTTACGAAAGCCTGCCTTCATTGTGGGGTTCATGTGGAGCATGGCAGC
CTTCTACACCTGCTCTCTTTACATTTTCTCAGCGGGTAGTCTATCGTGGC
GCAGCAGCCTGATCTTGTAGTGGAAAACGTTCCAAAAGCTCGTGCAATGC
GGGCCGAGGCGAAAATCGCGGACCAACCATCTAATGCAGCCGACGTGCAT
CAGTCGAAACAGGATGCCTGCCACACTGCATCTGCCGACGGTCAGGTATT
GTTCATTTGGTAGAGGGAATCGGAAGTTTAACACCGGGTTGGCCGCAAAG
ACGTGAGCTTTTAGCGAACATGTTCCGACTTGCCTGTCTGTGGTTACTGC
TATATTTTGATGGGACGCAACTTCCCCGTTCTCTCCGTGCCTGCCCCATC
CGGTGCGTTCCCGTTACGATGCAATGACGCTTTACTCTGCGGTGCAGTTT
CGAGCCAACAGAACCTTGTTCGCTTTGGAGACGACAACCTGTAAGTGAAC
CCTTCGCAAAAGTTGTGTGCACTTCTCAAAAGCTCCGGTGTCACTTGTAC
CACTATGTTGTCTTGTTTTCCAAAGCGTGTAGTTTCTCCAAAACAATGGT
CTTGCCGCTCCAATTGAAGAGATCCAATCGGATTGCGCGCCCTTCCCTGG
CTGAACAAAGCTACTCTACCATACTAAACAAACACCCAATACTGGGGCCA
AGGGTAACCCTACCTTGTCGCATCGGGCTCGCGTCCTAAAATGTCGTGAT
ATGTACGTTACTGTGAGAATGAGTCGGAATATCCTACATCTTGTTCCATG
ATTTGGGACACTGTCGATGAAAAGTGCAGCCAACTGCAGAGCTAGACGTT
GTTGCCAACTCAGTTTAGGTGCGAACGCGCTTCTCTAAATAGTAGTCTGT
TGGGTTTCGAATACTGGTGGTTTGTACTGAAGTTGCCAAGTGTTGTGCCA
TATTTTCCCTCTTTGTTAGCAGCATGCCGCAGCCCACCGCACTCTGAAAC
CTAACGGCTACCGCTCTCTCTTGCGCACGGTCCGGTTTGTGTGTGGCCTC
GTCTCCGAAGTGGTCGACTATCACGGCGTCGTCCTCGCCCCTGGAAACGT
GCTTGCTGCATATTTTTCGGATATTCCTTATCCTAAGGGAGGAGCCAACA
TTTCCGGGTGAGATTTATGGATTATATTCGACATAGTACATCACGGAAGC
GACAATAGCCCGCTTTTTGTGTATTCTAGAAGAATCCCGGTTGAACTACT
GTAGCACAAGTTGCCATTGTACCCATCCGTCACACCTAGCGTTGCATCAT
TATTACGTAAGTAGTCCGTGCAGTTCCGGGTAGTCGCAATAGTTAGTGTC
TTGCCTCCGTACACGAGGATATTTGGAGAGATACACATCATGCCCTCTAG
TACGATATACATTGGCAGCGGGCATGTCGCCTCTATCTTGTTTCGAATTG
ATGCACCGGTGCACGGCAAATCGACGTGTGTTGAAAGTATTATATTTTGG
ACATTGCCGCTTGGTGGTCACCAATCTCGCCGCCACCGTTCTCGCTATCC
CACCCGTGAACGCCAGGGCGTCGCTGTTCGTGATACCAACTTTTAGCACC
AGTTCCAGCACGTTGCTCGAAGCAGCTGTAGCGCTCGGCCGAGGCAATGC
CACCGCAACGATAGATAGCGAAGGTGCTGACTCCGTTAGCGCATCGCCCG
AAGACGGTGACGATGTTCCTCGAAATTCTTCCCATTTGGAGTCACAAGGA
ACCGTGAATGGCTGGAGCCTTTCGGATACCCAATCTTCCGAGGGACGAAG
CTTGGAGTGGGAAGCCTGCCGCTACTATGAAGTCGGAAATATTCGCGAGG
GTGTTCAAACTGCCATCTCTCATCCAGCACTCGGTAAGGAGGGGATGATT
TTTAAGCCCTACTTCCAAGAGCATGCGGAGAGGGGGGAATGTGGAACGTC
CCGGAACTATGTAGCACCACCTGACCCTGTCCGTCTCAGAATCAGAGCAT
CGGTTAGAATGTGGCTCAGAAATGCGTTGGAGATTCTACAGTTGTTCTTG
TGCTCCACTATCCTGTTGCCCCCCCCCTTCGCCTGCACCGTCCCTGGTTG
TTGCTGATACTACTTGTCGGTCGCGTTCTTTTGCCGCTCCTTCACGGTGT
TTCACCGCATCTTGCTGAAATAACCCAGCGAACCTTTCGAAAGAAGTGGA
AGTCTTTGTGCGCCATCATTCAGGACCGAACGCGTTCATCGAAGGAAACA
GCGACACGTGTGAGTGCTGTGAATGTGGCATGTGGCCCCAAGTAGAGCCT
CAGCGTTGGTATTACAATGAATAAAGCACACAACGTTTGTGGGCATGATA
TCTTCACCATTCATTGCCGTCGCCATATCATCTACTCCGTATTCACCTGT
GATTAAAATGCAGCCATCGTTTCATCTCCATGCCCACTCCTATTTGACGA
AGACGAATATTTCTGCGCTCTGAGACGCAAGCAGGTTTTATCTCGAGGTG
ATTTTTCGATAGTGAAGCTATGAAACGGAACGGGCGTGCCCGTTGCCCCT
ATTCCCTATTCACACACAAACTACCTCACATTGCCAGCGTTTGCTCACGC
TTGTACTCTGGATGCTTGATCATGTTGCCCATATGTTGATGGGATGTGGG
GCTTCGTCGTACTGGATAAAACCTGCAACTTCTACGCCTCAACCGCATTC
GCCATCATCCTCGGATATGAACGTCTGTGTCGTGCGGTGCTCATGCATCC
TGCGCATACTACCCACTCCTGGTGCGGCTGCAGACGTCAACCACATCGTG
CTCCAGGTGAGGGGAGCATTGCCGGTTGTTGATGTTGATTTTGTTTTAAC
AAATCTGTTCTGACCTCTCCTCCTCCTGCAGCGTTCAAGGCGAAGACCAG
ATCCGGGCCTTTGCTATTCATTCACGTTCAGATTTGTTCTGAAAATGGAC
AAAGACCCACAGCCATACGTAGTACGACAATAGCGAAAGGACGAACATTA
ACATTCATGGAGTAACAGGTCCACAGAGACAAATTCCAGACGAAGTAGAG
CCCATGGCTCCGACTTGCAGCTAAGATACTATACTACTGTGTTAGAGTAT
ACTTAGACTAGGAAACCACACCGTGAGCCTGCCCAATCCTGCAAATTTTA
AACTCGCGCCCGCGACGAAGTCGGACGAGTGTTTCTCATAATTCCATTCC
TCCGACCCATGGCCGCCCACTACACCCAAGTGGTGTGCCAAGAGCTCTAT
TGAAAACCAAACACGCTGCATGACAGATATATATGCTTGCTTAACCGTAG
ACAGTAGGTATGCCCCCCAGCCCCCCGCCATGTTCAGGGAGCTAGCTCTC
TTTGGATTTCTCACGACCAAGGCAAACACCCGCTTACACCCAGATCTCAA
CGAAAACGTCTCAATTCAATCACATTCGCGCGGTTGTCTTCGCTACGTTC
TATGAATTATCACGTGCTGCTTGGTTCTGGAGTTGAGCCGCGATGTTTGC
GCGGAATGTTTGATATGTTGGTGTTGTATCCAGAAGTGTCATGCGCAATT
GTGCCGCATTGTACGCCTTCACTCATTTCCTTCCTTGAAAACGTTCAGTC
CAGAAGAACTATGTAGTCCGATTCCATGCAGGACAACACTTTTGGATGCT
TTCACGAGATCGTTTTCAACAGCTCAAGTCCAATCACGAAGCGTTTTTCT
TTGGACCGGTCAACCCTCAATGCCTGAAAGTGAGCCGTTTCCTCGAATCC
TCATATTCTATGTATTTTCTCTATGTGCTCCTGGTACGCTACCCGCTGCC
CACAATTCACACGGATCCACTTTTTGTACCTCAGATCCGCAGCGACTGCG
GGTGGAACCTGAATACCGGCGAGAGCAGCTACAAGTTTGATGAATCACTA
GAGAACAACCCATCGGGAGACCCGGCGTGGACATACTCTCTCTCTTCCTC
TACATACAGCTACGGGGATTTCACCACAGACGCGGGAGTAGAACCGGGTT
ATTCTCGCAACTATTACAGCGGCGGGACGAGTGCGGCGAACGTTGCTGGG
CCTATCGAGAACGGGCGGCGACATGCGCTATGCGGCGGAGAGTATCTCGA
CAACTGTGACCTTGGACCATACAGCCCGAGCGATGTTGGGGACGGGTCAT
GCCAGCAGCACCTGAACACGGAAGGCTGTCACTACGACGGAGGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig907:6779..11122+

>mRNA_E_fasciculatus_S2_contig907.17154.1 ID=mRNA_E_fasciculatus_S2_contig907.17154.1|Name=mRNA_E_fasciculatus_S2_contig907.17154.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1020bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig907:6779..11122+ (Ectocarpus fasciculatus EfasUO2)
ATGAGGGCGCTCCAACGGATTATGCTCGGCGCTCTGCTGGCACGGTTGGG
GCTGTCAGTGACAGAGGAAGGCACAACCAGCGAGCAGTGCACCTACCAGT
TTCGAGCCAACAGAACCTTGTTCGCTTTGGAGACGACAACCTTGGTCGAC
TATCACGGCGTCGTCCTCGCCCCTGGAAACGTGCTTGCTGCATATTTTTC
GGATATTCCTTATCCTAAGGGAGGAGCCAACATTTCCGGGGCGTCGCTGT
TCGTGATACCAACTTTTAGCACCAGTTCCAGCACGTTGCTCGAAGCAGCT
GTAGCGCTCGGCCGAGGCAATGCCACCGCAACGATAGATAGCGAAGGTGC
TGACTCCGTTAGCGCATCGCCCGAAGACGGTGACGATGTTCCTCGAAATT
CTTCCCATTTGGAGTCACAAGGAACCGTGAATGGCTGGAGCCTTTCGGAT
ACCCAATCTTCCGAGGGACGAAGCTTGGAGTGGGAAGCCTGCCGCTACTA
TGAAGTCGGAAATATTCGCGAGGGTGTTCAAACTGCCATCTCTCATCCAG
CACTCGCGAACCTTTCGAAAGAAGTGGAAGTCTTTGTGCGCCATCATTCA
GGACCGAACGCGTTCATCGAAGGAAACAGCGACACGTACGTCAACCACAT
CGTGCTCCAGATCCGCAGCGACTGCGGGTGGAACCTGAATACCGGCGAGA
GCAGCTACAAGTTTGATGAATCACTAGAGAACAACCCATCGGGAGACCCG
GCGTGGACATACTCTCTCTCTTCCTCTACATACAGCTACGGGGATTTCAC
CACAGACGCGGGAGTAGAACCGGGTTATTCTCGCAACTATTACAGCGGCG
GGACGAGTGCGGCGAACGTTGCTGGGCCTATCGAGAACGGGCGGCGACAT
GCGCTATGCGGCGGAGAGTATCTCGACAACTGTGACCTTGGACCATACAG
CCCGAGCGATGTTGGGGACGGGTCATGCCAGCAGCACCTGAACACGGAAG
GCTGTCACTACGACGGAGGC
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