mRNA_E_fasciculatus_S2_contig9062.17151.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9062.17151.1
Unique NamemRNA_E_fasciculatus_S2_contig9062.17151.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFP9_9PHAE)

HSP 1 Score: 177 bits (449), Expect = 9.450e-50
Identity = 87/89 (97.75%), Postives = 89/89 (100.00%), Query Frame = 1 
Query:    1 IYAVRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            IYAVRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAAR+ICKRYN+VDVSRRSPSYESRLFKYGKRG
Sbjct:  720 IYAVRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARAICKRYNLVDVSRRSPSYESRLFKYGKRG 808
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BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIP8_ECTSI)

HSP 1 Score: 176 bits (445), Expect = 3.490e-49
Identity = 86/89 (96.63%), Postives = 88/89 (98.88%), Query Frame = 1 
Query:    1 IYAVRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            IYAVRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAAR+ICKRYN+ DVSRRSPSYESRLFKYGKRG
Sbjct:  929 IYAVRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARAICKRYNLADVSRRSPSYESRLFKYGKRG 1017
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BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NV60_9EUKA)

HSP 1 Score: 119 bits (298), Expect = 2.380e-29
Identity = 57/85 (67.06%), Postives = 68/85 (80.00%), Query Frame = 1 
Query:   13 RSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            RS   V++VS+FP+R IQI+LRLYK+ AEVL GFDVDACSVG+DG  VW T RA R++  RYN VD+ RRSPSYE RLFKY +RG
Sbjct:  238 RSKHAVSIVSQFPYRHIQIILRLYKSPAEVLMGFDVDACSVGYDGSKVWMTPRAHRALTHRYNTVDMERRSPSYEMRLFKYAQRG 322
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BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Syncephalis pseudoplumigaleata TaxID=1712513 RepID=A0A4P9Z2K7_9FUNG)

HSP 1 Score: 113 bits (283), Expect = 4.820e-29
Identity = 56/86 (65.12%), Postives = 67/86 (77.91%), Query Frame = 1 
Query:   10 VRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            VRS   VTLVS++P+R IQIVLRLY++ AE+L GFDVD CSVG+DG  VWA  RA  +I +R N VD++RRSPSYE RL KY KRG
Sbjct:   57 VRSKNVVTLVSQYPYRHIQIVLRLYRSPAEILMGFDVDCCSVGYDGSRVWALPRAREAIVRRQNSVDMTRRSPSYEVRLAKYSKRG 142
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Ankyrin (repeat protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NX12_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 2.090e-28
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   13 RSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            RS   VT+VS +PFR IQIVLRLYK+ AE+L GFDVD CSVGFDG  VW T RA R++  RYN VD+ RRSPSYE+RL KY +RG
Sbjct:  237 RSKYAVTIVSRYPFRHIQIVLRLYKSPAEILMGFDVDVCSVGFDGKKVWMTPRAHRALTHRYNTVDMERRSPSYETRLTKYAERG 321
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Uncharacterized (protein n=1 Tax=Planoprotostelium fungivorum TaxID=1890364 RepID=A0A2P6NN95_9EUKA)

HSP 1 Score: 116 bits (291), Expect = 2.090e-28
Identity = 57/85 (67.06%), Postives = 66/85 (77.65%), Query Frame = 1 
Query:   13 RSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            RS   VT+VS +PFR IQIVLRLYK+ AE+L GFDVD CSVGFDG  VW T RA R++  RYN VD+ RRSPSYE+RL KY +RG
Sbjct:  237 RSKYAVTIVSRYPFRHIQIVLRLYKSPAEILMGFDVDVCSVGFDGKKVWMTPRAHRALTHRYNTVDMERRSPSYETRLTKYAERG 321
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BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Poly ([ADP-ribose] polymerase n=1 Tax=Arcella intermedia TaxID=1963864 RepID=A0A6B2KWG6_9EUKA)

HSP 1 Score: 114 bits (285), Expect = 1.350e-27
Identity = 51/86 (59.30%), Postives = 69/86 (80.23%), Query Frame = 1 
Query:   10 VRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            +RS   VT+V ++P R IQI+LR+YK+ +E+L GFD+D C VG+DG TVWA  RAAR+I  ++N+VD+SRRS +YESRL+KY KRG
Sbjct:  862 IRSRNAVTIVGQYPIRHIQIILRIYKSPSEILMGFDIDCCCVGYDGETVWALPRAARAIANKFNMVDLSRRSLTYESRLYKYAKRG 947
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BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SVH4_9GLOM)

HSP 1 Score: 109 bits (273), Expect = 1.620e-27
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   13 RSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            RS   VT++S++P+R IQIVLRLY + +E+L GFDVD CSVGFDG  VWA  RA ++I K+ N++D++RRSPSYE RL KY +RG
Sbjct:   60 RSKHCVTILSQYPYRHIQIVLRLYNSPSEILTGFDVDCCSVGFDGENVWALPRAHQAIIKQRNIIDLTRRSPSYEMRLAKYAERG 144
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Uncharacterized (protein n=1 Tax=Glomus cerebriforme TaxID=658196 RepID=A0A397SE34_9GLOM)

HSP 1 Score: 109 bits (272), Expect = 1.810e-27
Identity = 51/85 (60.00%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   13 RSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            RS   VT++S++P+R IQIVLRLY + +E+L GFDVD CSVG+DG  VWA  RA ++I K+ N+VD++RRSPSYE RL KY +RG
Sbjct:   60 RSKHCVTILSQYPYRHIQIVLRLYNSPSEILTGFDVDCCSVGYDGENVWALPRAHQAIIKQRNIVDLTRRSPSYEIRLIKYAERG 144
[Close]
BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Match: Uncharacterized (protein (Fragment) n=1 Tax=Rhizophagus irregularis (strain DAOM 181602 / DAOM 197198 / MUCL 43194) TaxID=747089 RepID=U9TMV5_RHIID)

HSP 1 Score: 109 bits (273), Expect = 1.990e-27
Identity = 52/85 (61.18%), Postives = 67/85 (78.82%), Query Frame = 1 
Query:   13 RSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGHTVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG 267
            RS   VT++S++P+R IQI+LRLY + +EVL GFDVD CSVGFDG  VWA  RA ++I K+ NV+D++RRSPSYE RL KY +RG
Sbjct:   85 RSKHCVTIISQYPYRHIQIILRLYNSPSEVLTGFDVDCCSVGFDGKNVWALPRAHQAIIKQCNVIDLTRRSPSYEMRLAKYTERG 169
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9062.17151.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Uncharacterized9.450e-5097.75protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
Uncharacterized3.490e-4996.63protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Ankyrin2.380e-2967.06repeat protein n=1 Tax=Planoprotostelium fungivoru... [more]
Uncharacterized4.820e-2965.12protein (Fragment) n=1 Tax=Syncephalis pseudoplumi... [more]
Ankyrin2.090e-2867.06repeat protein n=1 Tax=Planoprotostelium fungivoru... [more]
Uncharacterized2.090e-2867.06protein n=1 Tax=Planoprotostelium fungivorum TaxID... [more]
Poly1.350e-2759.30[ADP-ribose] polymerase n=1 Tax=Arcella intermedia... [more]
Uncharacterized1.620e-2760.00protein (Fragment) n=1 Tax=Glomus cerebriforme Tax... [more]
Uncharacterized1.810e-2760.00protein n=1 Tax=Glomus cerebriforme TaxID=658196 R... [more]
Uncharacterized1.990e-2761.18protein (Fragment) n=1 Tax=Rhizophagus irregularis... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9062contigE_fasciculatus_S2_contig9062:5417..6209 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score175.6
Seed ortholog evalue1e-41
Seed eggNOG ortholog2880.D7FIP8
Model size270
KEGG koko:K04460
KEGG Pathwayko04010,map04010
Hectar predicted targeting categoryother localisation
GOsGO:0000166,GO:0003008,GO:0003674,GO:0003824,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006081,GO:0006082,GO:0007588,GO:0008150,GO:0008152,GO:0008465,GO:0009987,GO:0016043,GO:0016491,GO:0016614,GO:0016616,GO:0016618,GO:0019752,GO:0022607,GO:0030267,GO:0031406,GO:0032501,GO:0032787,GO:0036094,GO:0042802,GO:0042803,GO:0043167,GO:0043168,GO:0043177,GO:0043436,GO:0043648,GO:0043933,GO:0044085,GO:0044237,GO:0044281,GO:0044424,GO:0044444,GO:0044464,GO:0046487,GO:0046983,GO:0048037,GO:0050661,GO:0050662,GO:0051259,GO:0051287,GO:0055114,GO:0065003,GO:0070402,GO:0071704,GO:0071840,GO:0097159,GO:1901265,GO:1901363
Exons2
EggNOG free text desc.response to arachidonic acid
EggNOG OGsCOG0639@1,KOG0376@2759
EC3.1.3.16
Cds size270
COG Functional cat.T
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko01009
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842560.2141173-CDS-E_fasciculatus_S2_contig9062:5416..55331696842560.2141173-CDS-E_fasciculatus_S2_contig9062:5416..5533Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9062 5417..5533 -
1696842560.2274814-CDS-E_fasciculatus_S2_contig9062:6056..62091696842560.2274814-CDS-E_fasciculatus_S2_contig9062:6056..6209Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9062 6057..6209 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9062.17151.1prot_E_fasciculatus_S2_contig9062.17151.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9062 5417..6209 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9062.17151.1

>prot_E_fasciculatus_S2_contig9062.17151.1 ID=prot_E_fasciculatus_S2_contig9062.17151.1|Name=mRNA_E_fasciculatus_S2_contig9062.17151.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=90bp
IYAVRSLRTVTLVSEFPFRKIQIVLRLYKTLAEVLHGFDVDACSVGFDGH
TVWATNRAARSICKRYNVVDVSRRSPSYESRLFKYGKRG*
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mRNA from alignment at E_fasciculatus_S2_contig9062:5417..6209-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9062.17151.1 ID=mRNA_E_fasciculatus_S2_contig9062.17151.1|Name=mRNA_E_fasciculatus_S2_contig9062.17151.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=793bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9062:5417..6209- (Ectocarpus fasciculatus EfasUO2)
ATCTACGCGGTTCGATCTCTTCGGACGGTGACCCTGGTGAGCGAGTTCCC
GTTCCGGAAGATCCAGATCGTTCTGAGGCTGTACAAGACCCTGGCCGAGG
TGCTGCACGGTTTCGACGTGGACGCCTGCAGCGTCGGCTTCGACGGCCAC
ACGGTGAGAGGAGAAAGTTGGTGTGTTTTTTTTTCTTGGTGGTGGGGGGG
GGCAGGGTGTTTATGCCCCTTGTTTTGGTGGTGATGATGGTGTTAATAGT
GTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTT
GTTGTTGGTAGCGGCGGTGGTTAAGTGTTAGTGACAGTAGCGTGTTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTCGTTGAAGGCAAGCGTGTTTGTTG
TAAGTCTTGGCATCGTTAATCTGCGAAGTCGGCGACATGGTGCCGTGTGC
ACGCTGTCGATGATGTCGGTCTTTTGATATCGGTCTTTGATGATGAGAAA
AGAGGAGGAAACTCTTCGGCACTTTTTTCGAAGGACGCCACCCTACCTCC
CCTCCCCATATATACTTTTGTACCTGTGCGAATTTCCGCCCGAAAGGCTT
GCCGACGATTCTCATTCCGCACGACTCTCCCCTCCACACCGTCTATTTTA
CCCCCCCGACCACGGACGTTCACCAGGTGTGGGCCACGAACCGCGCCGCG
CGGTCTATCTGCAAGCGGTACAACGTGGTTGACGTCTCTCGCCGCAGCCC
TTCCTACGAGAGCCGGCTCTTCAAGTACGGCAAGAGAGGGTGA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9062:5417..6209-

>mRNA_E_fasciculatus_S2_contig9062.17151.1 ID=mRNA_E_fasciculatus_S2_contig9062.17151.1|Name=mRNA_E_fasciculatus_S2_contig9062.17151.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=270bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9062:5417..6209- (Ectocarpus fasciculatus EfasUO2)
ATCTACGCGGTTCGATCTCTTCGGACGGTGACCCTGGTGAGCGAGTTCCC
GTTCCGGAAGATCCAGATCGTTCTGAGGCTGTACAAGACCCTGGCCGAGG
TGCTGCACGGTTTCGACGTGGACGCCTGCAGCGTCGGCTTCGACGGCCAC
ACGGTGTGGGCCACGAACCGCGCCGCGCGGTCTATCTGCAAGCGGTACAA
CGTGGTTGACGTCTCTCGCCGCAGCCCTTCCTACGAGAGCCGGCTCTTCA
AGTACGGCAAGAGAGGGTGA
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