mRNA_E_fasciculatus_S2_contig9059.17148.1 (mRNA) Ectocarpus fasciculatus EfasUO2
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Overview
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM1_ECTSI) HSP 1 Score: 509 bits (1310), Expect = 3.550e-177 Identity = 241/267 (90.26%), Postives = 251/267 (94.01%), Query Frame = 1
Query: 1 APSTCSNGIPGVSDGDVCCLEACGQCGGVGCGNIAGTNGGSDCCPDTIKAESGGEFCGDAPCVMAGFTPSPVNPAFTGTAAPVNPSTCSNGIAGYQDGAICCVESCGRCGGDGCGKIPGTGGSDNCCPSVILAAGVVCGEAPCIIEGFTPAPAVVGGGTTAPFGTSTCSNGMLGYQDGPACCAANCGQCGGGGCGDIPGTAGSSACCSSAVEFAGNLCSVTGASPCVIDNYTPAPVVPDFGSAAPVVPSNCSNGLAGYQSNDICCLE 801
APSTCSNGIPGVSDGDVCCLEACGQCGG GCG IAGTNG SDCCPDTIK ESGG FCG+APCVMAGFTPSP+NPAF GTAAPV PSTCSNGIAGYQDGAICC+E CGRCGGDGCG IPGTGGSDNCCPS ILAAGVVCGEAPCIIEG+TPAPAVVGGGTTAP+GTSTCSNG+LGYQDGPACCAANCGQCGGGGCG +PGTAG+SACCSS VE AGNLCS TG SPCVIDNYTPAPVVPD+GSAAPVVPSNCSNGL GYQ+NDICCLE
Sbjct: 288 APSTCSNGIPGVSDGDVCCLEACGQCGGEGCGAIAGTNGASDCCPDTIKEESGGVFCGEAPCVMAGFTPSPLNPAFDGTAAPVAPSTCSNGIAGYQDGAICCLEICGRCGGDGCGTIPGTGGSDNCCPSTILAAGVVCGEAPCIIEGYTPAPAVVGGGTTAPYGTSTCSNGILGYQDGPACCAANCGQCGGGGCGSVPGTAGASACCSSDVELAGNLCSATGVSPCVIDNYTPAPVVPDYGSAAPVVPSNCSNGLPGYQNNDICCLE 554
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JSA0_9PHAE) HSP 1 Score: 255 bits (651), Expect = 7.280e-83 Identity = 119/137 (86.86%), Postives = 124/137 (90.51%), Query Frame = 1
Query: 1 APSTCSNGIPGVSDGDVCCLEACGQCGGVGCGNIAGTNGGSDCCPDTIKAESGGEFCGDAPCVMAGFTPSPVNPAFTGTAAPVNPSTCSNGIAGYQDGAICCVESCGRCGGDGCGKIPGTGGSDNCCPSVILAAGVV 411
+PSTCSNGIPGVSDG+VCCLEACGQCGGVGCG IAGTNG SDCCPDTIK ESGG FCG+APCVM GFTPSP+NPA GTAAPV PSTCSNGI GYQDG ICC+E CGRCGGDGCG IPGTGGSDNCCPS ILAAGVV
Sbjct: 2 SPSTCSNGIPGVSDGEVCCLEACGQCGGVGCGAIAGTNGASDCCPDTIKEESGGVFCGEAPCVMEGFTPSPLNPALDGTAAPVAPSTCSNGIPGYQDGVICCLEICGRCGGDGCGTIPGTGGSDNCCPSDILAAGVV 138
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ69_ECTSI) HSP 1 Score: 137 bits (344), Expect = 2.500e-36 Identity = 83/187 (44.39%), Postives = 103/187 (55.08%), Query Frame = 1
Query: 163 EFCGDAPCVMAGFTPSPVNPAFTGTAAPVNPST-----CSNGIAGYQDGAICCVESCGRCGGDGCGKIPGTGGSDNCCPSVILAAGVVCG---EAPCIIEGFTPAPAVVG---GGTTAPFGTSTCSNGMLGYQDGPACCAANCGQCGGGGCGDIPGTAGSSACCSSAVEFAGNLCSVTGASPCVIDN 690
+ G APCV+ G+ P+P T A PV P T CSNGI G Q G CC+ CG CGG GC ++ G G NCC I G +C EAPC+++ PAP+ V T P T CSNG G Q G +CC A CG+CGG GCG+ G G+ CC S +E G LCS+ A+PC ID+
Sbjct: 3 DIFGSAPCVL-GYAPAP-----TPVAEPVAPVTEPTDVCSNGIPGVQSGVSCCLAECGGCGGSGCAELGGGLGEHNCCEGEIEEFGELCSIKLEAPCVVDASAPAPSPVAEPVAPVTEP--TDVCSNGFPGIQSGVSCCLAECGECGGRGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYIDD 181
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Mannuronan (C-5-epimerase n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FWE8_ECTSI) HSP 1 Score: 131 bits (330), Expect = 6.090e-31 Identity = 91/256 (35.55%), Postives = 119/256 (46.48%), Query Frame = 1
Query: 31 GVSDGDVCCLEACGQCGGVGCGNIAGTNGGSDCCPDTIKAESGGEFCGDAPCVMA-GFTPSPVNPAFTGTAAPVNPSTCSNGIAGYQDGAICCVESCGRCGGDGCGKIPGTGGSDNCCPSVILAAGVVCGEAPCIIEGFTPAPAVVGGGTTAPFGTSTCSNGMLGYQDGPACCAANCGQCGGGGCGDIPGTAGSSACCSSAVEFAGNLCSVTGASPCVIDNYTPAPVVPDFGSAAPVVPSNCSNGLAGYQSNDICC 795
G+ G CC C +CGG GC + G+DCC I A G+ CG APC++ G +P+P + S G G G +CC CG CGG GCG G ++ CC S I AA V CG APC+++G T + G+ TC G G CC+A C +CGG GC D G + CC+S + NLCSVTGA+PC++D T +P + S G D CC
Sbjct: 23 GILKGIYCCSAGCEECGGSGCSDRGDGLTGADCCTSDILAA--GKACGSAPCLLEEGSSPTPAS---------------SGGCDGILQGDVCCSAECGTCGGSGCGSRAGLTANE-CCTSTIAAANVPCGSAPCVVDGDTSPTXXXXXXXXS--GSFTCD----GVLKGDYCCSAGCVECGGSGCSDRGGGLTGADCCTSDIS---NLCSVTGAAPCIVDGDT-SPTXXXXXXXXXXXXXSGSFTCDGVLKGDYCC 250
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K7R2_9PHAE) HSP 1 Score: 121 bits (304), Expect = 7.100e-28 Identity = 75/161 (46.58%), Postives = 93/161 (57.76%), Query Frame = 1
Query: 7 STCSNGIPGVSD--GDVCCLEACGQCGGVGCGNIAGTNGGSDCCPDTIKAESGGEFCG---DAPCVMAGFTPSPVNPAFTGTAAPVNPSTCSNGIAGYQDGAICCVESC-GRCGGDGCGKIPGTGGSDNCCPSVILAAGVVCGE---APCIIEG--FTPAP 456
+TCSNGI G+ D +CC ACG CGG GCGN+ G G DCC + I + + C +APCVM P F STC NG+AG QDG++CC E C G CGG+GCG I GT G+++CC + ILA GV C E APCI+ +T AP
Sbjct: 175 TTCSNGIVGIEDPVNLICCDAACGLCGGPGCGNVTGLTG-LDCCSEEIAVVN--DLCSVTNEAPCVMD-------PPDFVA-------STCPNGLAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSNTILATGVDCEEGVMAPCIMLNGTYTDAP 318
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZM0_ECTSI) HSP 1 Score: 92.8 bits (229), Expect = 8.190e-20 Identity = 47/85 (55.29%), Postives = 56/85 (65.88%), Query Frame = 1
Query: 253 PSTCSNGIAGYQDGAICCVESCGRCGGDGCGKIPGTGGSDNCCPSVILAAGVVCGE---APCIIEGF---TPAPAVVGGGTTAPF 489
PSTCSNG+ GYQDG CC+ +CG CGGDGCG + GT G+ +CCPS I+ + VCG APCII TPAPA+ T PF
Sbjct: 4 PSTCSNGLPGYQDGQACCLMNCGLCGGDGCGSVNGTAGASDCCPSTIINSARVCGGDIVAPCIIPATPAPTPAPALTLMPTPVPF 88
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJ70_9PHAE) HSP 1 Score: 86.7 bits (213), Expect = 1.220e-15 Identity = 81/263 (30.80%), Postives = 108/263 (41.06%), Query Frame = 1
Query: 13 CSNGIPGV--SDGDVCCLEACGQCGGVGCGNIAGTNGGSDCCPDTIKAE--SGGEFCGDAPCVMAG---FTPSPVNPAFTGTAAPVNPSTCSNGIAGYQDGAICCVESCGRCGGDGCGKIPGTGGSDNCCPSVILAAGVVCGEAPCIIEG-----------------------FTPAPAVVGGGTTAPFGTSTCSNGMLGYQDGPACCAANCGQCGGGGCGDIPGTAGSSACCSSAVEFAGNLCSVTGA-SPCVIDNYTPAPV 708
C G+ G+ S+ +VCC+ ACG CGG GC ++ GT+GGSDCC D I + G G APC++ TPS A A + G + P+ L A AP ++ FTP V G +S C NG G+Q ACC+ CGQCGG GCG++ GS+ CC + AG +C V +PC+I NYTPAP+
Sbjct: 7 CVAGVEGILSSNEEVCCIAACGMCGGSGCSDVEGTDGGSDCCVDDILDSDVTCGVDDGVAPCIVDPDIITTPSATEAATPAPAXXXXXXXXXXXXXXXXXXXXXXXTTTAP--GQXXXXXXXXIAPSSTSPTESLTATAQPAAAPVVVAAPXXXXXXXXXXXXXXXXXXXAGSFTPVAPVAGA-------SSYCENGYPGWQSNEACCSEFCGQCGGSGCGEL----GSATCCYDNIISAGLVCGVDVLEAPCIIINYTPAPL 256
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: von (Willebrand A domain containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHN7_ECTSI) HSP 1 Score: 79.3 bits (194), Expect = 1.150e-13 Identity = 63/179 (35.20%), Postives = 83/179 (46.37%), Query Frame = 1
Query: 262 CSNGIAGYQ--DGAICCVESCGRCGGDGCGKIPGTGGSDNCCPSVILAAGVVC---GEAPCIIEGF-----------------TPAPAVVGGGTTAPF-------GTST------CSNGMLGYQD--GPACCAANCGQCGGGGCGDIPGTAGSSACCSSAVEFAGNLCSVTGASPCVID 687
CSNG+ G + +G CC +CG CGG GC PG GS +CC S I+ G C G +PC I+G T P+ GGG+ + G S C+NG+ G + G CC A+CGQCGG GCG+ CC + + G CS G +PC +D
Sbjct: 107 CSNGVYGIESSNGKACCALTCGSCGGVGCSGRPG--GSYDCCESEIVEEGEACAATGASPCYIDGDEVLDPVVPSMSPVVPEETDMPSGFGGGSYSYSYDFVSWDGDSMDDQFMWCTNGVPGMESAGGEVCCPADCGQCGGVGCGEF-----GEDCCITEIMDYGQPCSEIGTAPCYLD 278
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LML4_ECTSI) HSP 1 Score: 78.6 bits (192), Expect = 2.120e-13 Identity = 41/73 (56.16%), Postives = 49/73 (67.12%), Query Frame = 1
Query: 256 STCSNGIAGYQDGAICCVESC-GRCGGDGCGKIPGTGGSDNCCPSVILAAGVVCGE---APCIIEG--FTPAP 456
STC NGIAG QDG++CC E C G CGG+GCG I GT G+++CC S IL GV C APCI+ +T AP
Sbjct: 9 STCPNGIAGVQDGSVCCAEECNGVCGGEGCGSIVGTNGAEDCCSSTILTTGVDCDVGVVAPCIMLNGTYTDAP 81
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6S4_9PHAE) HSP 1 Score: 70.9 bits (172), Expect = 3.080e-10 Identity = 37/70 (52.86%), Postives = 43/70 (61.43%), Query Frame = 1
Query: 502 CSNGMLGYQDGPACCAANCGQCGGGGCGDIPGTAGSSACCSSAVEFAGNLCSVTGASPCVIDNYTPAPVV 711
CSNG G Q G ACC A CG+CGG GCG+ G G+ CC S +E G LCS+ A+PC ID T VV
Sbjct: 446 CSNGFSGIQSGNACCLAECGECGGHGCGEFGGGLGADKCCESDIEEYGELCSIALAAPCYIDGETSDSVV 515 The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9059.17148.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90) Total hits: 15
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_E_fasciculatus_S2_contig9059.17148.1 >prot_E_fasciculatus_S2_contig9059.17148.1 ID=prot_E_fasciculatus_S2_contig9059.17148.1|Name=mRNA_E_fasciculatus_S2_contig9059.17148.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=272bp APSTCSNGIPGVSDGDVCCLEACGQCGGVGCGNIAGTNGGSDCCPDTIKAback to top mRNA from alignment at E_fasciculatus_S2_contig9059:80..5730+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_E_fasciculatus_S2_contig9059.17148.1 ID=mRNA_E_fasciculatus_S2_contig9059.17148.1|Name=mRNA_E_fasciculatus_S2_contig9059.17148.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=5651bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9059:80..5730+ (Ectocarpus fasciculatus EfasUO2)back to top Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9059:80..5730+ >mRNA_E_fasciculatus_S2_contig9059.17148.1 ID=mRNA_E_fasciculatus_S2_contig9059.17148.1|Name=mRNA_E_fasciculatus_S2_contig9059.17148.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=816bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9059:80..5730+ (Ectocarpus fasciculatus EfasUO2)back to top |