mRNA_E_fasciculatus_S2_contig905.17145.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig905.17145.1
Unique NamemRNA_E_fasciculatus_S2_contig905.17145.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig905.17145.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHV6_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 1.490e-24
Identity = 52/73 (71.23%), Postives = 55/73 (75.34%), Query Frame = 1 
Query:    1 MRSKRATFAGEAHDIASEPSVRVRLGLDSGADVPQGFRRRLYTWKVLDLGLESPTGTAVGFSGAFHSWETHCY 219
            MRSKR TFA + H IA  PS     GLD+  DVPQGFRRRL+  KVLDLGLES T  AVGFSGAFHSWETHCY
Sbjct:    1 MRSKRITFAAQLH-IALLPSP-PSPGLDASGDVPQGFRRRLHARKVLDLGLESTT--AVGFSGAFHSWETHCY 69
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig905.17145.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
Uncharacterized1.490e-2471.23protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig905contigE_fasciculatus_S2_contig905:15616..19173 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size225
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-00_000580.1
Cds size225
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842559.4480937-CDS-E_fasciculatus_S2_contig905:15615..156851696842559.4480937-CDS-E_fasciculatus_S2_contig905:15615..15685Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig905 15616..15685 +
1696842559.45864-CDS-E_fasciculatus_S2_contig905:16116..161811696842559.45864-CDS-E_fasciculatus_S2_contig905:16116..16181Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig905 16117..16181 +
1696842559.469307-CDS-E_fasciculatus_S2_contig905:19083..191731696842559.469307-CDS-E_fasciculatus_S2_contig905:19083..19173Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig905 19084..19173 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig905.17145.1prot_E_fasciculatus_S2_contig905.17145.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig905 15616..19173 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig905.17145.1

>prot_E_fasciculatus_S2_contig905.17145.1 ID=prot_E_fasciculatus_S2_contig905.17145.1|Name=mRNA_E_fasciculatus_S2_contig905.17145.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=75bp
MRSKRATFAGEAHDIASEPSVRVRLGLDSGADVPQGFRRRLYTWKVLDLG
LESPTGTAVGFSGAFHSWETHCYL*
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mRNA from alignment at E_fasciculatus_S2_contig905:15616..19173+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig905.17145.1 ID=mRNA_E_fasciculatus_S2_contig905.17145.1|Name=mRNA_E_fasciculatus_S2_contig905.17145.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3558bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig905:15616..19173+ (Ectocarpus fasciculatus EfasUO2)
ATGCGATCCAAGCGCGCAACCTTCGCTGGGGAAGCGCATGACATTGCTTC
CGAGCCCTCCGTGCGCGTGCGTTTGAACAGATGTTCGTTTGTGCCCAGTA
GATGACGGCCTTTTTCTGTCTTTGTGACAGATTGAATCCGAGTATATCTG
ACTTTCCATGATCTTTTGGCACCAATTTCCCGTTGCTGCGCGGATTCCTT
CCTCTAGGTTTGTCTCTGATTCATCTGTTCGTCTTGTCCTCGTTGCCCCT
AATAACAACTTTTCGAACATTTTCATGACACCAAGTAGATGCAATGGACC
AGCCTGGCCCTCTTCGCGTGCACTGCTACGTAGATATCTTGCTGAATGTC
TACCGCGGATGTTAGAACCGCATTGTAGCTCAAAACTCGTGCACCCTAGA
ACCTTCACCATTTCCTCCGTCCAACTCTCTTCTCTCTTTCTCTCTCTCTC
TCTCTCTCTCTCTCTCTTGCATCGTCCCCACCAACTACTGATCTCTGTCA
GGTCTTGGACTTGACTCGGGTGCAGACGTCCCTCAGGGGTTTCGTCGGAG
GCTTTACACATGGAAGGTAAGTATCGTAGCATACCAGCGTGTGTTTGTCG
GCAGCAAGGGATTCAGTCATGGTGGACACATGTGTCATGTGGGGGACCGG
AGCTGGCTTGCCCGATCAACAAAACCAAGAAGAGCCACAAATGCTCACTC
CAGCCAACGCCATTTGTCTACGGAAAATCTACACGTCCATACTTCTGGTT
GTGGCATGGTAACACCCAGTACACTCCGCTTTCCGAAGCCCTGCCAATGG
ATGCTGGTCGGTGCTTTCATAGCCCTCGCCCCGTCCCTCGAGGCATACAA
TTAGGGGTCCGCTGTCAAGAACAGTTCACCTAAATCCGAGGCTCAGTGTT
TTGCTGTGCCGCCACAGTCGAGCTTCGGCCACATTGTTTGACCAAACGCA
GGGTGCACGTCCGAGCTCCGACTCTCCAACATTTCCTTGCTTGTAGACCA
CCTCAGCTACTCCAGGTAAATTTGCCGTGACAAAAGCGCTCCTTTGGATT
GTATAATATTTGTTTCGGCTCAGCTTCTGAGATGGGAGTGGTGTGTTCCG
CTTTGCGTTTGAGAAGTGGTTGTCCTCCCTTCTACAACCCCATTCTGGGT
TTAGTAGTTCGACAGTTATCTCTTTCTTCGCGATGTTCTGCTCCAAGCTT
ATTGTACCTTTGTCTGGGACTGCTTGTTACCACGGGCAATAGACTACCAA
CCTTGAGCCATCCCAAGAGGTACTGGGTAGCTAATGGTGCAGCGAATCTA
AAGGAACACTTGATCAACGGTCAGCTGACAACAAGGCCACCAACATATGA
GTAACCCCCCCCCCCCCCCCCCCCTCCCCGTTTTGTTCAATGTTACGACG
TAAGGTATGCGATCCTCTCGCCGTACGCCAACGGAAACACGACGGGAAAC
TACCGCGGGAGGTCGCAGTTTAGCCAGATGGTGGCGGTGGATCTGACCGA
CTTTACCGTCGAAGGCGTCAGCGTCGTAGACCTTGCCGACACTTCTAGAC
AGCAGGCGAGCAAACACTAAAGAAGAGTCAAAGGTGGTACCTTTCCGGTG
GTGCTCAGCGTTAACTGCCATGTTTGCATGCTGGTGCTGATTGTCGTGTC
GCTTTCTCACGACCCCGCATCTACCACGGAGGCGCTCGCGAAGACGCTAC
GTGCGTTTGTTGACCGGAGTACGTGCTGCGGAAGGTGCAGCGCATCGTGT
TCGATAGCATGTGGCTGGTTGCCACAGGCAGTGCGTGGTCCAACGCAGAC
GCCCCTTCAGAGCTTCGCAAAGCGGGAAGGCACCGATTACCAAATATCTC
GTGGTTGGTATCAAAATGTTTCACCATTCACTTATCGTTGTTGCCTGCTT
AAGAGGCCCCTCTCCGCGCCTCCCCCAGAAGACCCCCGAGAAAACGTCTC
AATATTTTCGATCGTGCGGATGGTAGATGGTGCTGTGCCTCTCTACATAG
ATAGCTGGTGCGTGTTTTGTTACAATCTTTTATCTTTGGTGCTTATCGCG
TTTCGATCGTTGTTTGTCGCGCGGCTAGTTGGAAACCGTGACAACGTGAA
CCGCACCGCAGCAGCGTCGGATGACGAACCTCATACTCTTGCGGCATGCT
CGCTACCGCCCGTGTTTATGCCCTGGGACACTATTTTTTCGCGCGGTTGT
GCAGATTCCGTACCAGCCCGACCCTAACCTGAGGGGCTACGTTGGAGGCT
TTTCCCTGGGGCATCACGTCTACCTCACTCCCCACTTTAACGGGGTGTTT
TTCGGCAAGGTAGGGTAAATACTTGGTGTGTGTGGATGCCCTTGTGCAAA
CTGCTCTGTATGTTGCGAGCAGAATTCTCAGGGCGAAGCCGACACCTTTA
CAAGGAGAAATGTGGTAGTGTCATCGATAAAACCGAACCGTACGCGCAAG
TGGTGCGTGTGGACATGGGCGTAAGAAAACAAGAGAGGACGTGTTGAGCC
TGGCGTACGCCGCCTTTAAATGGAGTCATCACTACATGATAAGAGTAGCA
TCATGCCTGTTTTGATCGTCTTCGGTTGATTATTTCTGAGCTGCATTCCA
CCCACACTCGCCAGGGTTAAGACCTGGAAATAGGATCGTCCAATAAGACG
CCTAAACCGGAATGCCTGCCGTCGAAACGCTTAGAGGTTTTTCTCGGAGG
CTTGAGGGTGAAGCCTATGATATTTTCTGCGTAATCTTGCATCGTTGTAA
TGCGCGTTTCTTCGTTCATATATTCCCCTTGCGGTGTTCATCGTCAGGTT
GCGCGAGTCGATATGCGGGAGATGCTGACCATGGCGGCCGGTGAACGAGC
GGCCAATTACGACGGTTTGCAGGTCCGCGGCGCTTAATCCGTCTGTTCTT
TATGCTCGTGTCTCCAAACCACCAACTTTTGGTACTGTGCCATCCCCACG
CATAAACAGCTAAACTCTATTGCGCACCCCGATGCAAGTCCGTGTGCTAC
ACCGCCCCCCGCCCCCCGGACAACTCTTCTTGTTCAGTTCGAACTCACCA
ACATAGTAGTACGTGTTCGCGGAGCCGAACCTACGAGCGACCGAACGACG
CGAGTTTACCGATGATTCATTCGGACATTTATTTTCCCTTTTCCTGGTTG
TTCTGCAGCGCCGACAGCGCCAATCGTGTCTTCGAAACTAGCAACGCACA
ACAAATCTTGCACAACACCAAGTGTTTGGCCCTCGATAGTTGACTCACTC
TTTTTTTTCTCGCTGACAGCGGACATCCAAGCAATATCTTTGCGACCGAC
GCCAAGGTTGCGACCGAGCTTGTTCGGTGCCTCGGTTCTGTCAAAAATAC
CACGCCAACACCCCCCCGTCAAACGTGTCCGTCGTCTTCGTCTTCCCACT
ACTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCCTGTCGTGTGTGTGC
ACGCGTGCGCGTCCGAAGGTGCTAGATTTGGGGCTGGAGTCACCTACCGG
TACCGCGGTCGGCTTTTCAGGGGCCTTCCACTCGTGGGAGACGCACTGCT
ACCTGTAG
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig905:15616..19173+

>mRNA_E_fasciculatus_S2_contig905.17145.1 ID=mRNA_E_fasciculatus_S2_contig905.17145.1|Name=mRNA_E_fasciculatus_S2_contig905.17145.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=225bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig905:15616..19173+ (Ectocarpus fasciculatus EfasUO2)
ATGCGATCCAAGCGCGCAACCTTCGCTGGGGAAGCGCATGACATTGCTTC
CGAGCCCTCCGTGCGCGTGCGTCTTGGACTTGACTCGGGTGCAGACGTCC
CTCAGGGGTTTCGTCGGAGGCTTTACACATGGAAGGTGCTAGATTTGGGG
CTGGAGTCACCTACCGGTACCGCGGTCGGCTTTTCAGGGGCCTTCCACTC
GTGGGAGACGCACTGCTACCTGTAG
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