mRNA_E_fasciculatus_S2_contig9043.17138.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9043.17138.1
Unique NamemRNA_E_fasciculatus_S2_contig9043.17138.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9043.17138.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9043contigE_fasciculatus_S2_contig9043:2371..3105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Stop1
Start1
Model size735
Hectar predicted targeting categoryother localisation
Exons1
Cds size483
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842558.7599921-UTR-E_fasciculatus_S2_contig9043:2370..25421696842558.7599921-UTR-E_fasciculatus_S2_contig9043:2370..2542Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9043 2371..2542 +
1696842558.7888696-UTR-E_fasciculatus_S2_contig9043:3025..31051696842558.7888696-UTR-E_fasciculatus_S2_contig9043:3025..3105Ectocarpus fasciculatus EfasUO2UTRE_fasciculatus_S2_contig9043 3026..3105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842558.7717674-CDS-E_fasciculatus_S2_contig9043:2542..30251696842558.7717674-CDS-E_fasciculatus_S2_contig9043:2542..3025Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9043 2543..3025 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9043.17138.1prot_E_fasciculatus_S2_contig9043.17138.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9043 2543..3025 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9043.17138.1

>prot_E_fasciculatus_S2_contig9043.17138.1 ID=prot_E_fasciculatus_S2_contig9043.17138.1|Name=mRNA_E_fasciculatus_S2_contig9043.17138.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=161bp
MRACRSSDTMDLLLLLLRPLFPFEKSVSSASLHRMLSTHSTALARTLQQY
RDHHSFSTSRTGNLHTAHKETNFSTPKATKFDMRVLRAAGPADPLDAVCC
NMWHPPQETWNPADALTATQLKRTTEIVTLKGLHTRPNYPLPPSSLAANN
AARERACVRH*
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mRNA from alignment at E_fasciculatus_S2_contig9043:2371..3105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9043.17138.1 ID=mRNA_E_fasciculatus_S2_contig9043.17138.1|Name=mRNA_E_fasciculatus_S2_contig9043.17138.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=735bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9043:2371..3105+ (Ectocarpus fasciculatus EfasUO2)
GACAGTTGGTTCCTTTCGAACACCACACACACACGACTGCGACAGACATC
AACAGCGAGGCTACTACGCCGCCGTATGATAGGATCGGAAGCGATGCACA
CACCGTGCTCTGTGTTGAGCAGCGCACCACTCAACAAGCAAATATTGGCG
ACGGCCGCTTGTGTAATTGTAAATGAGAGCATGCAGGAGCAGCGATACCA
TGGATCTACTACTACTGCTGCTGCGCCCTCTTTTTCCTTTTGAGAAGAGT
GTGTCGTCTGCCTCTCTCCACCGAATGCTCTCCACGCACTCTACAGCTCT
TGCTCGCACTCTACAGCAGTATCGAGATCACCACAGCTTCTCAACCTCGC
GGACAGGCAACCTGCACACTGCCCACAAAGAGACGAACTTCTCTACACCC
AAAGCCACCAAATTTGACATGAGAGTTTTACGCGCAGCAGGACCAGCCGA
TCCCCTCGACGCGGTCTGCTGTAACATGTGGCACCCCCCCCAGGAAACAT
GGAACCCGGCGGACGCTCTCACCGCAACCCAGCTGAAGAGGACTACCGAG
ATTGTTACGTTAAAGGGACTACACACCCGCCCAAATTATCCCCTGCCCCC
GTCGAGCCTTGCGGCCAATAATGCAGCGCGCGAGAGAGCATGCGTTAGGC
ACTGACATCCACGTTCTCGGGCTCCACTGGCCCCTTGTGCTGGTCCACCC
CGAACTTGTCCTTGAAACTCCGCGTGGTCGCGAGC
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9043:2371..3105+

>mRNA_E_fasciculatus_S2_contig9043.17138.1 ID=mRNA_E_fasciculatus_S2_contig9043.17138.1|Name=mRNA_E_fasciculatus_S2_contig9043.17138.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=483bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9043:2371..3105+ (Ectocarpus fasciculatus EfasUO2)
ATGAGAGCATGCAGGAGCAGCGATACCATGGATCTACTACTACTGCTGCT
GCGCCCTCTTTTTCCTTTTGAGAAGAGTGTGTCGTCTGCCTCTCTCCACC
GAATGCTCTCCACGCACTCTACAGCTCTTGCTCGCACTCTACAGCAGTAT
CGAGATCACCACAGCTTCTCAACCTCGCGGACAGGCAACCTGCACACTGC
CCACAAAGAGACGAACTTCTCTACACCCAAAGCCACCAAATTTGACATGA
GAGTTTTACGCGCAGCAGGACCAGCCGATCCCCTCGACGCGGTCTGCTGT
AACATGTGGCACCCCCCCCAGGAAACATGGAACCCGGCGGACGCTCTCAC
CGCAACCCAGCTGAAGAGGACTACCGAGATTGTTACGTTAAAGGGACTAC
ACACCCGCCCAAATTATCCCCTGCCCCCGTCGAGCCTTGCGGCCAATAAT
GCAGCGCGCGAGAGAGCATGCGTTAGGCACTGA
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