mRNA_E_fasciculatus_S2_contig9033.17126.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9033.17126.1
Unique NamemRNA_E_fasciculatus_S2_contig9033.17126.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
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BLAST of mRNA_E_fasciculatus_S2_contig9033.17126.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FS31_ECTSI)

HSP 1 Score: 318 bits (814), Expect = 2.050e-96
Identity = 185/278 (66.55%), Postives = 196/278 (70.50%), Query Frame = 1 
Query:   13 QDRKRPKSMSPTRDANAAPPSTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAVTLEQILMHNFHDNRVEGLRRSVSGEKGSQRYEQPVAPPXXXXXXXXXXXXXXXXAVPEAKKSRRRVIVPHRLDVSNFMAPSAGAKGRAASSEPGRFVLVLRSAVCHLGGESVSMGHYVAYTADRVASGDGD-LKKGATGSANATKAGGWGSKSTTG---GKGRLLTGAGDGDSSQDSVAWLRLDDLHEGPGGRGFVEKLESVHEANRLF 834
            +DRKRPKS+SPTRDANAAPP + +                                          AAVTLEQILMHNFHDNRVEGLRRSVSGEKGSQRYEQPVAP                 AVPEA KSRRRVIVPHRLDVSNFMAPSAGAKGRA  SEPGRFVLVLRSAVCHLGGESVS GHYVAYTADRVASGDG   KKG  G A+A KAG W SKSTTG   G G+   GA DG+SSQDSVAWLRLDDLHEGPGGRG+VE+L++VHEANRLF
Sbjct:  832 EDRKRPKSLSPTRDANAAPPLSTNSNADPAASSSPATQQQQGEQQATARSPSVPRRGKGKDSGGVGAAVTLEQILMHNFHDNRVEGLRRSVSGEKGSQRYEQPVAP--TPAAGAFSRASGTGAAVPEATKSRRRVIVPHRLDVSNFMAPSAGAKGRADKSEPGRFVLVLRSAVCHLGGESVSKGHYVAYTADRVASGDGGGNKKGEAGVAHAAKAGEWASKSTTGWASGGGKSSIGADDGESSQDSVAWLRLDDLHEGPGGRGYVERLDTVHEANRLF 1107
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BLAST of mRNA_E_fasciculatus_S2_contig9033.17126.1 vs.
Match: Uncharacterized (protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1X4_9PHAE)

HSP 1 Score: 290 bits (743), Expect = 2.450e-86
Identity = 209/323 (64.71%), Postives = 218/323 (67.49%), Query Frame = 1 
Query:   13 QDRKRPKSMSPTRDANAAP-PSTNSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-AAVTLEQILMHNFHDNRVEGLRRSVSGEKGSQ------------------------------------------RYEQPVAP--PXXXXXXXXXXXXXXXXAVPEAKKSRRRVIVPHRLDVSNFMAPSAGAKGRAASSEPGRFVLVLRSAVCHLGGESVSMGHYVAYTADRVASGDGDLKK-GATGSANATKAGGWGSKST--TGGKGRLLTGAGDGDSSQDSVAWLRLDDLHEGPGGRGFVEKLESVHEANRLF 834
            +DRKRPKS+SPTRDA AAP  STNS     XXXXXXXXXXXXXXXXXXXXXX                AAVTLEQILMHNFHDNRVEGLRRSVSGEKGSQ                                          RYEQPVAP  P                +VPEA KSRRRVIVPHRLDVSNFMAPSAGAKGRA +SEPGRFVLVLRSAVCHLGGESVS GHYVAY ADRVA+GDG  KK G  G A+A KAG WGSKST    G G+   GA DGDSSQDSVAWLRLDDLHEGPGGRG+VEKL+SVHEANRLF
Sbjct:  793 EDRKRPKSLSPTRDATAAPFLSTNSNADPAXXXXXXXXXXXXXXXXXXXXXXPSVTRRGKGKDSGGVGAAVTLEQILMHNFHDNRVEGLRRSVSGEKGSQPVDAWRMVSMLPFYALSGEHDGDSDPSNDKHFDTIMLPMVLKRYEQPVAPTPPGTSGAGASSRASGACASVPEATKSRRRVIVPHRLDVSNFMAPSAGAKGRADNSEPGRFVLVLRSAVCHLGGESVSKGHYVAYAADRVAAGDGGRKKKGEAGGAHAAKAGEWGSKSTGWASGGGQSSLGADDGDSSQDSVAWLRLDDLHEGPGGRGYVEKLDSVHEANRLF 1115
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9033.17126.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
Uncharacterized2.050e-9666.55protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 ... [more]
Uncharacterized2.450e-8664.71protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9033contigE_fasciculatus_S2_contig9033:3355..6267 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score322.4
Seed ortholog evalue2.3e-85
Seed eggNOG ortholog2880.D7FS31
Model size927
Hectar predicted targeting categoryother localisation
Exons4
EggNOG free text desc.Ubiquitin carboxyl-terminal hydrolase
EggNOG OGs2CXTA@1,2RZJR@2759
Cds size927
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842557.596444-CDS-E_fasciculatus_S2_contig9033:3354..36191696842557.596444-CDS-E_fasciculatus_S2_contig9033:3354..3619Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9033 3355..3619 -
1696842557.609987-CDS-E_fasciculatus_S2_contig9033:3882..40701696842557.609987-CDS-E_fasciculatus_S2_contig9033:3882..4070Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9033 3883..4070 -
1696842557.62108-CDS-E_fasciculatus_S2_contig9033:4263..44311696842557.62108-CDS-E_fasciculatus_S2_contig9033:4263..4431Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9033 4264..4431 -
1696842557.6320202-CDS-E_fasciculatus_S2_contig9033:5961..62671696842557.6320202-CDS-E_fasciculatus_S2_contig9033:5961..6267Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9033 5962..6267 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9033.17126.1prot_E_fasciculatus_S2_contig9033.17126.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9033 3355..6267 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9033.17126.1

>prot_E_fasciculatus_S2_contig9033.17126.1 ID=prot_E_fasciculatus_S2_contig9033.17126.1|Name=mRNA_E_fasciculatus_S2_contig9033.17126.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=309bp
KKKKQDRKRPKSMSPTRDANAAPPSTNSNYNADPASALATQQQHGEQQTT
RARSPSVTRKGKGKDSEGAGAAVTLEQILMHNFHDNRVEGLRRSVSGEKG
SQRYEQPVAPPPPGAGASSRATGAGAGAVPEAKKSRRRVIVPHRLDVSNF
MAPSAGAKGRAASSEPGRFVLVLRSAVCHLGGESVSMGHYVAYTADRVAS
GDGDLKKGATGSANATKAGGWGSKSTTGGKGRLLTGAGDGDSSQDSVAWL
RLDDLHEGPGGRGFVEKLESVHEANRLFRCVAGGVVVLLLLLLLLLLLLL
LLLVVQLSL
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mRNA from alignment at E_fasciculatus_S2_contig9033:3355..6267-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9033.17126.1 ID=mRNA_E_fasciculatus_S2_contig9033.17126.1|Name=mRNA_E_fasciculatus_S2_contig9033.17126.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=2913bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9033:3355..6267- (Ectocarpus fasciculatus EfasUO2)
AAAAAAAAAAAACAAGACCGGAAGAGGCCCAAGTCCATGTCGCCCACCCG
GGACGCAAATGCCGCCCCTCCCTCCACCAACTCCAACTACAACGCGGATC
CCGCATCCGCACTAGCCACGCAGCAACAACACGGGGAGCAACAGACCACC
AGAGCAAGGTCACCGTCAGTTACGCGTAAGGGCAAGGGCAAGGACAGCGA
AGGGGCGGGGGCGGCGGTAACGCTGGAGCAGATCCTGATGCACAACTTCC
ACGATAACCGCGTGGAGGGCCTGCGACGCTCCGTCTCTGGGGAGAAGGGA
AGCCAGGTGGGGCGTCCTCGTCATGGTGCAAACTTGACTCTTGACTCTGT
GTGTGTTTGTGTCATATTTTTGTCGTTAGCATCGACCGTGCTAACCGGCT
GGCCGATGAAAAGACGCCAGTCTCAGTGTAGTATAGTGAAGCCTAGGTAT
CGTTATTGTAAAGGGTTTAGTGTGTATACTTTTTTCTTGTCTCGCGGATG
TGCAAGTATTCTGCATGGAGGAAGCAGCCTTTGTTGTATGCATACAACAC
CAACGATTTGTTTTTTTCAAATCTTGAGGGCTATAATAGCGGTTTTTTGG
TGTGTGTACACGACGTGCGAAGATTCTGCATACGATTGAGGGTGTTTTTT
TGCTTTTGTTGGTATAGACGCGATGGCCATGCAAGCCACGTGTCTGTGTG
GTATTGCACATTTAGTTTTTTGCCCGTCCAGAAACGTTGGAAGGAAAGAA
GTGAATTTGACGAAATCATTTTGATATCGTTGAAGAACAAGCGTATTGTA
GTTTTGACATCGCTTTCATGTCGACAGGGGCGCCCTTTGGCAGGGTGTAC
CGGCAGAGGACGCGTAGTCAATGGTCTAACCGCTAAGGAATGCAAAACAT
AAGCGTACGCCCTCCCCCCCCTTCCCGTATTTTGTACGACCTACTGGCAT
GCTCCCCTCATGTTTCTACTGTCCTTATGCGGCACCCTCTTCCGCTGTTC
GGTTCATCTACCCCCCCCCCTACCCCCCTACCTCTGGTTTGTACGCGATG
ATGATGACTCTTTCCAGCCTGTGGACGCGTGGCGTATGGTGTCCATGCTA
CCGTTCTACGCTCTCTCAGGAGAACACGATGGGGATAGCGACCCTTCGAA
CGACAAACACTTCGATACGTGAGCCCTCCTTCACATAAGACCCACGTCTT
CGAGTTAGTGTAGGCCCTACTTGCTGTGATGCTGCGGTTGTTTCTGTTGT
TGTTCTGTTCCAAAGCAACGAACCATCCCTGAAACACAGCGTAATAAAAC
ACGAACTTCCTTTCTTTGCCCTTGCACTCCGATAAGCATCCCACCCACGC
ATTCATTACTTCCGGAGCCTTGCATCCTCTACTACCGAATCTATGCTGTG
GTTGTGGCTGGTGTTGGCTACGTAGCTGATGCTGTGGTTGTTGCTGCTGT
TGGTCTGTTCAACTGTTGTTTGTTTGTGCGTTGTCGTAGACCCGCTGCCA
CACACACGCGTATCTACGTCAAATGCATTAGCGCAGAGGCCTAGACACAG
CGCTGCTGCTGCTGCTGCTGCTGCAGCTGCTTACACGTTTGCTGCTTCCA
ACGTACAGGCTCTCTCGCCGCCACTGCTGCTGCTGCTGCTGCTGCTTCTG
CCGTTATCGCGAGGCGCGCAGCTTTTGCTTCGCTCAATTCACTTCCACCA
CAGAGAGAGGGGACCAACAGTGATCGATCGATCAATCTATCTCCCGCAAC
AACGGTGACTGACGCACTTCGTTTCCCGTCCATCCCCAACAACCCAACCC
CCTTCGCGAAGGATAATGCTGCCGATGGTGCTCAAGAGGTACGAGCAGCC
GGTCGCTCCCCCTCCTCCCGGCGCCGGCGCTTCTTCCCGAGCCACTGGTG
CTGGTGCTGGTGCTGTGCCAGAAGCGAAAAAATCCCGCCGCAGAGTAATC
GTGCCGCATCGCCTTGACGTGTCCAACTTCATGGCACCCTCTGCCGGTGC
TAAGGTGCGGCGGGAGTGCCTTAGGGTTGCATTATCACCTGCCGGAGGGG
GGGAGGGTTCGTGGGGGGGCGGCAGAGCAACCGAGACAGCTAGCAGCGCA
AAAATAACGGCATGTGATATATTCTTGTGCGACCTCGCCGCTCTCCCTCC
TTCGTTTAGGACGGCGCCTGACGTCAACTACCTATTGTAAACCGCAGGGA
CGTGCCGCCAGCTCCGAGCCCGGCCGCTTCGTGCTGGTGCTCCGGTCTGC
CGTGTGCCACCTCGGGGGCGAGAGCGTGAGCATGGGGCACTACGTCGCCT
ACACCGCCGACAGAGTCGCGTCCGGCGACGGCGACTTGAAGAAGGGTGCT
ACCGGTAGCGCCAACGCTACCAAAGCCGGCGGATGGTGAGCCAGTCAGCC
AGCCAGCCAGCCAGCCAGCCAAACCTACGCGGCTGTGTCGGTTGTGTTAT
ATGGTGTGCTGCGGGCGGACTGATTGCTCAGTTGAATCCTCTGTTGGTTG
TGCTTTGATGCTTATCCTGGGACTTTCTGCCTGTTGATCGCTCAGCAAAT
AACCCCCACCCCCCCCACCGTGGTCAATGTTCTAACCTCTAAGGCATGCA
AAACATCAGAGTACGCCCCCCCCCCCGTGTCAAAAAAACAATAACTAGGG
GTTCGAAGTCGACGACGGGGGGAAAGGGGAGACTATTAACAGGGGCTGGC
GACGGTGACAGCAGCCAAGACAGCGTGGCGTGGCTGCGTCTGGACGACCT
GCATGAAGGGCCGGGGGGGCGGGGGTTCGTGGAGAAGTTGGAGAGCGTGC
ACGAGGCAAACCGTCTCTTCAGGTGCGTTGCCGGTGGCGTTGTTGTGTTG
TTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGGTTGT
TCAACTCTCCCTA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9033:3355..6267-

>mRNA_E_fasciculatus_S2_contig9033.17126.1 ID=mRNA_E_fasciculatus_S2_contig9033.17126.1|Name=mRNA_E_fasciculatus_S2_contig9033.17126.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=927bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9033:3355..6267- (Ectocarpus fasciculatus EfasUO2)
AAAAAAAAAAAACAAGACCGGAAGAGGCCCAAGTCCATGTCGCCCACCCG
GGACGCAAATGCCGCCCCTCCCTCCACCAACTCCAACTACAACGCGGATC
CCGCATCCGCACTAGCCACGCAGCAACAACACGGGGAGCAACAGACCACC
AGAGCAAGGTCACCGTCAGTTACGCGTAAGGGCAAGGGCAAGGACAGCGA
AGGGGCGGGGGCGGCGGTAACGCTGGAGCAGATCCTGATGCACAACTTCC
ACGATAACCGCGTGGAGGGCCTGCGACGCTCCGTCTCTGGGGAGAAGGGA
AGCCAGAGGTACGAGCAGCCGGTCGCTCCCCCTCCTCCCGGCGCCGGCGC
TTCTTCCCGAGCCACTGGTGCTGGTGCTGGTGCTGTGCCAGAAGCGAAAA
AATCCCGCCGCAGAGTAATCGTGCCGCATCGCCTTGACGTGTCCAACTTC
ATGGCACCCTCTGCCGGTGCTAAGGGACGTGCCGCCAGCTCCGAGCCCGG
CCGCTTCGTGCTGGTGCTCCGGTCTGCCGTGTGCCACCTCGGGGGCGAGA
GCGTGAGCATGGGGCACTACGTCGCCTACACCGCCGACAGAGTCGCGTCC
GGCGACGGCGACTTGAAGAAGGGTGCTACCGGTAGCGCCAACGCTACCAA
AGCCGGCGGATGGGGTTCGAAGTCGACGACGGGGGGAAAGGGGAGACTAT
TAACAGGGGCTGGCGACGGTGACAGCAGCCAAGACAGCGTGGCGTGGCTG
CGTCTGGACGACCTGCATGAAGGGCCGGGGGGGCGGGGGTTCGTGGAGAA
GTTGGAGAGCGTGCACGAGGCAAACCGTCTCTTCAGGTGCGTTGCCGGTG
GCGTTGTTGTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTGTTG
TTGTTGTTGGTTGTTCAACTCTCCCTA
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