mRNA_E_fasciculatus_S2_contig9029.17122.1 (mRNA) Ectocarpus fasciculatus EfasUO2

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_E_fasciculatus_S2_contig9029.17122.1
Unique NamemRNA_E_fasciculatus_S2_contig9029.17122.1
TypemRNA
OrganismEctocarpus fasciculatus EfasUO2 (Ectocarpus fasciculatus EfasUO2)
Homology
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Glyco_hydro_114 (domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JZ77_9PHAE)

HSP 1 Score: 520 bits (1340), Expect = 1.330e-182
Identity = 311/388 (80.15%), Postives = 328/388 (84.54%), Query Frame = 1
Query:    1 MKFAHIASICLAATAAPRLARAATATPNFDNLLSLVSQLQEEVMLLSTEYGAKDDEIALLVTQLTACEGSDDSQEEE------GDDSTPXXXXXXXXXXXXXXXEPTXSXXXVSEXXXXXXXXXXXXXXXXXAEEPDSPTPVSGGGFSFSKGNSWNXXXXXXXXXXXXXXVFFIDMDAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLE-PSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYNLGTSVCDEANALGLDTILKNYDLGAPFCSCVDSSRDVDCMH 1143
            MKFAHIAS+CLAATAAPR+ARAAT   NFDNLLSLV+QLQEEVMLLSTEYGAKDDEIA LVTQLT CE S  +           D+STPXXXXXXXXXX X XX  TX XXX+  XXXXXXXXXXXXXXXXX   P SP P SGGGF+FS+ +SWN              VFFIDMDAGQ VIDELH KGKGVVCYISIGTVEDWRDDAK+FPSSAIGGDV+GWAGE+WVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVY E  ST V VSEA+QIEYNSWFAD+VHAYGMGVGLKN VELVPILVNKFDFALNEECHEWNEC VY+DTFLAEGKPV+NVEYNLG SVCDEANALGLDTILK+YDL A FCSCVD SRDVDCMH
Sbjct:    1 MKFAHIASVCLAATAAPRIARAAT---NFDNLLSLVTQLQEEVMLLSTEYGAKDDEIASLVTQLTTCEQSTTTXXXXXXXXXXSDNSTPXXXXXXXXXXDXQXXX-TXXXXXIYXXXXXXXXXXXXXXXXXXXXXPGSPEPGSGGGFTFSRDSSWNYNLRTPVDTSADVDVFFIDMDAGQGVIDELHDKGKGVVCYISIGTVEDWRDDAKEFPSSAIGGDVSGWAGEKWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYTEGSSTGVSVSEAEQIEYNSWFADIVHAYGMGVGLKNAVELVPILVNKFDFALNEECHEWNECNVYEDTFLAEGKPVYNVEYNLGNSVCDEANALGLDTILKSYDLDAAFCSCVDPSRDVDCMH 384          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase precusor n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FRL2_ECTSI)

HSP 1 Score: 221 bits (563), Expect = 6.100e-61
Identity = 115/234 (49.15%), Postives = 141/234 (60.26%), Query Frame = 1
Query:  436 GNSWNXXXXXXXXXXXXXXVFFIDMDAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYNLGTSVCDEANALGLDTILKNYDLGAPFCSCVDSSRDVDC 1137
            G+SW               VFFID+D  Q  IDELHGKGK V CYIS+GTVE WR+D   FPSS +G      +GE W+D+  + VREIM  RV+ A+S  CDAVEPDN+ V+ E  +   +S+ +QI YN W A++V   GM VGLK    L+      +DFA             YQ  FL+EGKPVFNVEY+     CD +NALG+DTI KNYDL AP CSC + SRD DC
Sbjct:  180 GDSWQYNLDTPVNTDVDVDVFFIDLDVAQDTIDELHGKGKYVSCYISVGTVESWREDVGVFPSSVVGTASGDDSGENWIDITQESVREIMEDRVKKAASKGCDAVEPDNISVWNEQDSGFTISKDEQISYNKWVAELVQENGMKVGLKAGHSLIEDTSMYYDFA------------AYQIPFLSEGKPVFNVEYSKDYGGCDGSNALGIDTIFKNYDLKAPMCSCANPSRDHDC 401          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Glyco_hydro_114 (domain-containing protein n=3 Tax=Stigmatella TaxID=40 RepID=A0A1I0KAA5_9DELT)

HSP 1 Score: 186 bits (472), Expect = 6.150e-53
Identity = 95/229 (41.48%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  436 GNSWNXXXXXXXXXXXXXXVFFIDM-DAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYN---LGTSVCDEANALGLDTILKNYDLGAPFCSC 1110
            G  W               V+ +D+ D   + ++ L  +G+ V+CY S G+ E+WR DA  FP++A+G  + GW GE+W+D+ +  VR+IM  R+E+A    CDAV+PDN+  Y   +T  +++ ADQ+ +N + A   HA G+ VGLKN V  V  LVN FDF +NEEC +++EC      F+A GKPVF++EY    L   +C +ANAL  DT++KN DL AP  SC
Sbjct:   52 GTRWQIQLNGTLNTSFNVAVYDVDLFDTPVSTLNALKAQGRKVICYFSAGSYENWRSDAGSFPAAALGNALDGWPGERWLDIRNTKVRDIMRTRIELARQKGCDAVDPDNVDGYAN-ATGFKLTSADQLSFNRFLATEAHARGLAVGLKNDVGQVAQLVNDFDFQVNEECFQYDECEELLP-FIAAGKPVFSIEYGGNALAQQICPQANALNFDTLVKNLDLDAPRISC 278          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase precusor n=2 Tax=Stigmatella aurantiaca TaxID=41 RepID=Q098C2_STIAD)

HSP 1 Score: 186 bits (473), Expect = 1.200e-52
Identity = 97/229 (42.36%), Postives = 138/229 (60.26%), Query Frame = 1
Query:  436 GNSWNXXXXXXXXXXXXXXVFFIDM-DAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYN---LGTSVCDEANALGLDTILKNYDLGAPFCSC 1110
            G  W               V+ +D+ D   A +  L  +G+ V+CY S G+ EDWR DAK FPS+ +G  + GW GE+W+D+    VR+IM +R+E+A    CDAV+PDN+  Y   +T  +++ ADQ+ +N + A   H+ G+ VGLKN V+ V  LVN FDF +NEEC +++EC   +  F+  GK VF++EY    L  SVC EANALG DT++KN +L A   SC
Sbjct:   88 GTRWQIQLSGKLNTGFNVPVYDVDLFDTPTATLTALKSQGRKVICYFSAGSYEDWRPDAKSFPSAVLGKALDGWPGERWLDIRATSVRDIMRSRIELARQKGCDAVDPDNVDGYSN-NTGFRLTSADQLAFNRFLASEAHSRGLAVGLKNDVDQVTQLVNDFDFQVNEECLQYDECDTLRP-FITAGKAVFHIEYGGAALAQSVCPEANALGFDTLVKNLELDAARISC 314          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A7V4LGC7_9DELT)

HSP 1 Score: 184 bits (468), Expect = 1.050e-51
Identity = 104/247 (42.11%), Postives = 143/247 (57.89%), Query Frame = 1
Query:  382 EEPDSPTPVSGGGFSFSKGNSWNXXXXXXXXXXXXXXVFFIDM-DAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEY---NLGTSVCDEANALGLDTILKNYDLGAPFCSC 1110
            + PD+P  V    +  + G  W               ++ ID+ DA QAVID L  +G  V+CY S G+ EDWR+DA  FP +A+G  + GW GE+W+D+   DVR IM AR++ A +  CD VEPDN+  Y   S    ++ A Q++YN + A   HA G+ VGLKN +E V  L+  FD+AL+EEC +W+EC + +  F+A GK VF VEY   +L   VC  ANAL  DT++K  DL A    C
Sbjct:   91 DTPDAPPGV----WRPAPGTRWQWQLSGPIDDSLDVDMYDIDLFDAPQAVIDGLRARGVAVICYFSAGSREDWREDAGDFPPAAVGEPLDGWPGERWLDIRSPDVRRIMQARLDRAVARRCDGVEPDNVDAYANDSG-FPLTAAHQLDYNRFLAAEAHARGLSVGLKNDLEQVEDLLADFDWALDEECFQWDECDLLRP-FVAAGKAVFQVEYGDASLAADVCPRANALDFDTLIKRLDLDAWRIPC 331          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Glyco_hydro_114 (domain-containing protein n=1 Tax=Nitrosomonas communis TaxID=44574 RepID=A0A1I4UB85_9PROT)

HSP 1 Score: 180 bits (457), Expect = 5.830e-51
Identity = 97/206 (47.09%), Postives = 132/206 (64.08%), Query Frame = 1
Query:  493 VFFIDM-DAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYNLGTS--VCDEANALGLDTILKNYDLGAPF 1101
            V+ ID+ D+ Q++ID+LH KG  VVCY S G+ E+WR+DA QFP + +G    GWAGE+W+D+   +VR IM AR+ +A S  CDAVEPDN+  Y    T   ++  DQI+YN + A   H  G+ VGLKN +E +  L+  FDFA+NEECH + EC V +  F+ +GK VFNVEY       VC +++ALGL TI    +L   F
Sbjct:   49 VYDIDLFDSPQSLIDDLHAKGIAVVCYFSAGSWENWREDADQFPENVLGRK-NGWAGERWLDIRSNEVRSIMAARIGLARSKGCDAVEPDNVDGYSN-KTGFPLTYQDQIDYNRFLAMAAHTLGLKVGLKNDLEQINDLIGDFDFAINEECHRYRECDVLKP-FIDQGKAVFNVEYRTTKQDKVCAQSSALGLSTIFLPLELDDSF 251          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase (Fragment) n=1 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1CLR0_9DELT)

HSP 1 Score: 180 bits (457), Expect = 8.500e-51
Identity = 97/231 (41.99%), Postives = 136/231 (58.87%), Query Frame = 1
Query:  430 SKGNSWNXXXXXXXXXXXXXXVFFIDM-DAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEY---NLGTSVCDEANALGLDTILKNYDLGAPFCSC 1110
            S G SW               ++ ID+ D  Q+VIDELH  G+ V+CY S G+ E+WR DA +FP  AIG  +  W GE+W+D+ +Q VR+IM  R+ +A S  CD V+PDN+  Y    T   ++ ADQ++YN + A   HA G+ VGLKN V+ +  LV+ FD+ LNEEC +++EC      F+  GK VF +EY   +L   +C  ANA+  DT++K  DL A   SC
Sbjct:   43 SPGTSWQIQLDGTIETSFVVEMYDIDLFDVPQSVIDELHRDGRVVICYFSAGSWEEWRPDADRFPQEAIGNRLDNWPGERWLDIRNQAVRQIMVERMRLAVSKRCDGVDPDNVDGYSN-DTGFALTFADQLDYNRFLAGQAHALGLAVGLKNDVDQIEQLVDDFDWQLNEECFQYDECDRLLP-FIQAGKAVFQIEYGGQSLADRICPRANAMNFDTLIKRIDLDAWRISC 271          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Glyco_hydro_114 (domain-containing protein n=2 Tax=Atopomonas hussainii TaxID=1429083 RepID=A0A1H7R5T2_9GAMM)

HSP 1 Score: 179 bits (454), Expect = 1.580e-50
Identity = 90/191 (47.12%), Postives = 128/191 (67.02%), Query Frame = 1
Query:  493 VFFIDM-DAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYN-LGTSVCDEANALG 1059
            V+ ID+ D   + I  L  +G+ VVCY S G+ EDWRDDA Q+P SA+G +++GW GE+W+D+ +  VR ++  R+++A+S  C AVEPDN+  Y   +  + +SEADQ+++N W AD  HA  +G+ LKN VEL+P LVN FDFALNE C+ +NEC  Y   F A+GK VF  EY    T +C++A + G
Sbjct:   52 VYDIDLYDTPASTIANLKAQGRIVVCYFSAGSWEDWRDDAAQYPQSALGNNLSGWPGERWLDIRNPQVRTLLAKRLDLAASKGCHAVEPDNIDGYSNDNG-LGLSEADQVDFNRWLADQAHARQLGIALKNAVELIPQLVNHFDFALNESCYRYNECGGYS-AFTAQGKAVFIAEYRKYSTKLCNKAASSG 240          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: endo (alpha-1,4 polygalactosaminidase n=1 Tax=Pseudomonas sp. A3.4 TaxID=2919919 RepID=UPI001F4E8089)

HSP 1 Score: 179 bits (453), Expect = 2.500e-50
Identity = 89/191 (46.60%), Postives = 126/191 (65.97%), Query Frame = 1
Query:  493 VFFIDM-DAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYN-LGTSVCDEANALG 1059
            V+ ID+ D   + I  L  +G+ VVCY S G+ EDWRDDA Q+P+ A+G ++ GW GE+W+D+ +  VR ++  R+++A S  CDAVEPDN+  Y   S  + +++ADQ+++N W A   HA  + + LKN VELVP LVN FDFALNE C+ +NEC  Y + F A+GK VF  EY      +C++ANA G
Sbjct:   56 VYDIDLYDTPSSTIGNLKAQGRIVVCYFSAGSWEDWRDDAAQYPTQALGNNLDGWPGERWLDIRNSTVRTLLAKRMDLAVSKGCDAVEPDNVDGYSN-SNGLGLTKADQLDFNRWLASAAHARNLAIALKNAVELVPDLVNHFDFALNESCYRYNECNAY-NAFTAQGKAVFVAEYRKYNNKLCNKANASG 244          
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Match: Endo (alpha-1,4 polygalactosaminidase n=1 Tax=Myxococcales bacterium TaxID=2026763 RepID=A0A7X9IZM4_9DELT)

HSP 1 Score: 180 bits (456), Expect = 6.550e-50
Identity = 100/239 (41.84%), Postives = 140/239 (58.58%), Query Frame = 1
Query:  406 VSGGGFSFSKGNSWNXXXXXXXXXXXXXXVFFIDM-DAGQAVIDELHGKGKGVVCYISIGTVEDWRDDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAVEPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVPILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYN---LGTSVCDEANALGLDTILKNYDLGAPFCSC 1110
            VS G +  + G  W               ++ ID+ +A QAVID L  +G  V+CY S G+ E+WR+DA  FP++A+G  + GW GE+W+D+   DVR IM AR++ A +  CD VEPDN+  Y   S    ++ A Q++YN + A   HA G+ VGLKN +E V  L+  FD+ALNEEC +W+EC + +  F+  GK VF VEY    L  ++C  ANAL  DT++K  DL A    C
Sbjct:   97 VSSGIWRPAPGTRWQWQLTGTIDDSLDVEMYDIDLFEAPQAVIDGLRARGVVVICYFSAGSREEWREDAGDFPAAAVGEPLDGWPGERWLDIRSPDVRRIMQARLDRAVARRCDGVEPDNVDAYANDSGFPLIA-AHQLDYNRFLAAEAHARGLSVGLKNDLEQVEDLLADFDWALNEECFQWDECDLLRP-FVVAGKAVFQVEYGDAGLAGTICPRANALDFDTLIKRLDLDAWRIPC 333          
The following BLAST results are available for this feature:
BLAST of mRNA_E_fasciculatus_S2_contig9029.17122.1 vs.
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
Glyco_hydro_1141.330e-18280.15domain-containing protein n=2 Tax=Ectocarpus TaxID... [more]
Endo6.100e-6149.15alpha-1,4 polygalactosaminidase precusor n=1 Tax=E... [more]
Glyco_hydro_1146.150e-5341.48domain-containing protein n=3 Tax=Stigmatella TaxI... [more]
Endo1.200e-5242.36alpha-1,4 polygalactosaminidase precusor n=2 Tax=S... [more]
Endo1.050e-5142.11alpha-1,4 polygalactosaminidase n=1 Tax=Deltaprote... [more]
Glyco_hydro_1145.830e-5147.09domain-containing protein n=1 Tax=Nitrosomonas com... [more]
Endo8.500e-5141.99alpha-1,4 polygalactosaminidase (Fragment) n=1 Tax... [more]
Glyco_hydro_1141.580e-5047.12domain-containing protein n=2 Tax=Atopomonas hussa... [more]
endo2.500e-5046.60alpha-1,4 polygalactosaminidase n=1 Tax=Pseudomona... [more]
Endo6.550e-5041.84alpha-1,4 polygalactosaminidase n=1 Tax=Myxococcal... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
E_fasciculatus_S2_contig9029contigE_fasciculatus_S2_contig9029:2081..5100 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Ectocarpus fasciculatus EfasUO2 vs UniRef902022-09-19
OGS1.0 of Ectocarpus fasciculatus EfasUO22022-07-07
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score513.1
Seed ortholog evalue1.1e-142
Seed eggNOG ortholog2880.D7FPZ5
Model size1146
Hectar predicted targeting categorysignal peptide
Exons5
EggNOG free text desc.Endo alpha-1,4 polygalactosaminidase
EggNOG OGs2RCTR@2759,COG3868@1
Ec32 ortholog descriptionGlycoside-hydrolase family GH114, TIM-barrel domain
Ec32 orthologEc-01_008070.1
Cds size1146
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1696842557.2090518-CDS-E_fasciculatus_S2_contig9029:2080..25911696842557.2090518-CDS-E_fasciculatus_S2_contig9029:2080..2591Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9029 2081..2591 +
1696842557.227947-CDS-E_fasciculatus_S2_contig9029:3071..33101696842557.227947-CDS-E_fasciculatus_S2_contig9029:3071..3310Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9029 3072..3310 +
1696842557.2371051-CDS-E_fasciculatus_S2_contig9029:4140..42611696842557.2371051-CDS-E_fasciculatus_S2_contig9029:4140..4261Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9029 4141..4261 +
1696842557.2457886-CDS-E_fasciculatus_S2_contig9029:4532..47381696842557.2457886-CDS-E_fasciculatus_S2_contig9029:4532..4738Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9029 4533..4738 +
1696842557.2545657-CDS-E_fasciculatus_S2_contig9029:5031..51001696842557.2545657-CDS-E_fasciculatus_S2_contig9029:5031..5100Ectocarpus fasciculatus EfasUO2CDSE_fasciculatus_S2_contig9029 5032..5100 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_E_fasciculatus_S2_contig9029.17122.1prot_E_fasciculatus_S2_contig9029.17122.1Ectocarpus fasciculatus EfasUO2polypeptideE_fasciculatus_S2_contig9029 2081..5100 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_E_fasciculatus_S2_contig9029.17122.1

>prot_E_fasciculatus_S2_contig9029.17122.1 ID=prot_E_fasciculatus_S2_contig9029.17122.1|Name=mRNA_E_fasciculatus_S2_contig9029.17122.1|organism=Ectocarpus fasciculatus EfasUO2|type=polypeptide|length=382bp
MKFAHIASICLAATAAPRLARAATATPNFDNLLSLVSQLQEEVMLLSTEY
GAKDDEIALLVTQLTACEGSDDSQEEEGDDSTPSPEPSTPAPEPEPQPEP
TPSPEPVSEPETTPSPESVFEPTPTPAEEPDSPTPVSGGGFSFSKGNSWN
YNLGTPVDTDADVDVFFIDMDAGQAVIDELHGKGKGVVCYISIGTVEDWR
DDAKQFPSSAIGGDVAGWAGEQWVDVNDQDVREIMTARVEMASSMNCDAV
EPDNMMVYLEPSTDVQVSEADQIEYNSWFADVVHAYGMGVGLKNVVELVP
ILVNKFDFALNEECHEWNECVVYQDTFLAEGKPVFNVEYNLGTSVCDEAN
ALGLDTILKNYDLGAPFCSCVDSSRDVDCMH*
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mRNA from alignment at E_fasciculatus_S2_contig9029:2081..5100+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_E_fasciculatus_S2_contig9029.17122.1 ID=mRNA_E_fasciculatus_S2_contig9029.17122.1|Name=mRNA_E_fasciculatus_S2_contig9029.17122.1|organism=Ectocarpus fasciculatus EfasUO2|type=mRNA|length=3020bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9029:2081..5100+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGTTCGCACACATTGCATCTATCTGCCTCGCGGCCACCGCCGCGCC GCGCCTCGCTCGGGCAGCTACAGCTACGCCGAACTTTGACAACCTCTTGT CGCTCGTCTCTCAGCTGCAAGAGGAGGTCATGCTGCTCTCCACCGAGTAC GGCGCCAAGGACGACGAGATCGCGTTGCTCGTCACCCAGCTGACGGCTTG CGAAGGCAGCGATGACTCTCAGGAGGAAGAAGGTGACGACTCCACACCGT CCCCTGAACCGTCGACACCTGCTCCCGAGCCCGAGCCTCAGCCAGAGCCA ACGCCGTCACCCGAGCCCGTGTCTGAGCCAGAGACGACACCGTCACCCGA GTCCGTGTTTGAGCCAACACCGACCCCAGCAGAAGAGCCTGACTCGCCCA CACCCGTTTCCGGCGGAGGGTTCTCCTTCTCCAAGGGCAACAGCTGGAAC TACAATTTGGGGACGCCCGTTGACACAGACGCGGACGTCGACGTCTTCTT CATCGACATGGGTACGTGGGGTGCTTCGCAGCAGTCGAGAGCATTTGCCT ATTTGAAATTAGAGTACGGTATCAGTGCGGCAGCAGCGTGCATCCGTCAA GTAGACTACTGCTGTGCCTACTGCTGTCGCCTGCCGTAGTCTAGAGTCTT ACCGCAGTACCGTATGTAGTCCAGTACAGTAGTACGCAGTCCTTGGTGGA CCGTTGTTCGTGGCTGTGTTTTTTTTTTCCATGGCGCAGTTTTCGCCAAT CCTACCCGTGGTGCTCAAGTCTCCCGACCTGATGACCTCCTACCCCATGT CTTGATTGTTTCATTAGTTGTAGCGAAAGGCTGGGTTCGTTTGGGGCCTG TTGCATGGGATCGAGAGTCGGGTTCACAAGAGGCACTCGACGACATGTGC TTTCATTCGTTCCCATACAGCAGTAGACTACTACTCAATCCTTTCATTCT AAATTTTGTGCGACGCCCACCCCATTCCTCCCGCTCCTCAGACGCCGGCC AGGCCGTCATAGACGAGCTGCACGGCAAGGGCAAGGGGGTGGTCTGCTAC ATCTCCATCGGCACGGTCGAGGACTGGCGTGACGACGCGAAGCAATTCCC GTCCTCGGCAATCGGCGGGGACGTCGCCGGGTGGGCGGGCGAACAGTGGG TCGACGTGAACGACCAGGATGTTCGTGAGATCATGACCGCGCGAGTGGAG ATGGCGTCCAGCATGAACTGCGACGCTGTGGTGAGTACTGCTGTACAAGT GTCGTGATCGTGATCGTGTTGGACTTGAAAACATGTTAGGTGGCGTCTTT CGTCTTTCCGATTTTGCAGTGTCGAGGATGCGAAAAATGTGTTCTCTCCC CCGTACAAACGTGGGTCTCTCAGATGGGCGGTTTTCGAAAGAGATGCCGC GATGTGAATAGTCTAGGTTTTGCTTCGTTTCGTGACCTGTTGAGAAGTAC GGTGACCACTAGACCACGAGTCAGCCGCTGACGGTGAGTGATTTCGTGCT TCTCCAACAAAAGTTTTTTTCGTGCTTCTCAACAAAAGTTAATGCCCGGT GTCCGGTGAAGCGCTGTTAAGCCACGAACACATCCCCCCAGGGTTACCAT CCCTGTCATCAGCGCTGTGCTTGCTACATAGATCGATACAAGCAGATCAT CGGCTCATTTCGCCATGCCAGTTTCCTCAGGCATATATATATATTTTTTT CTTAATATGACACAACGAATCCATCTTATAAGAATAATTCGGGTCTATCT ACGTTAAGAATAATTCGGGCGCAAAGAAATTTACGCTCGAGGGGAGATTC GAACCTCGGACATTTGCCCTTGTTAAAAAGCACGATAATTTGACGTTTCT GTGGGAATCGTAGTTCTCTAGACTACGGCAGACTCTGGCGTCCCATACAG CAGTGTAAGCGTCAGTTTTGACGCCTTTCGGCCTGTGTTCTAGACTCATC CCAGCCGGGGATGCACAGGAGAAGGGCATCCAACATAAAACGCATAAACA AAACTGACCCATCCATACACCCTCCTCCGCCCCCGTTCTTGCTAACTAAT TGTTGCTCAGGAACCTGACAACATGATGGTTTACCTCGAACCTTCGACTG ATGTTCAAGTGTCCGAAGCGGATCAGATCGAGTACAACTCCTGGTTCGCC GACGTCGTGCACGCGTATGGCATGGGGGTCGGTAAGTCTTGTCTTCGCAA GCGGTTGGATGTGCCGGTTCTGGACGGGGTGCCCTTTTTTTGGTTTCTTG TTCGCCCTCCAGGATTTACAGGCTTGCACATACGTTCCGCCGATGTTCAC ATGCGCCCACCTTGCTTACACTTCTTCTGTCCATGGCCGCCCGGCCGAGT AATATGCAACAGCAGTGTATGTTCCGATTTGAAACTGGGCGTTACTTGTT GTTACTATTGCCCTCAAACACTGCCCTTGTACCCTCTCTTCACCGTCACC AGGTCTGAAGAACGTGGTGGAGTTGGTCCCAATCCTCGTCAACAAGTTCG ACTTCGCGCTGAACGAGGAGTGCCACGAGTGGAACGAGTGCGTTGTTTAC CAGGACACCTTCCTTGCAGAGGGCAAGCCCGTGTTCAACGTCGAGTACAA CTTGGGCACGTCCGTGTGCGACGAGGCGAACGCCCTCGGCCTTGACACCA TCCTCAAGGTACGTAATATCATCCGTTGCGATCATCGATTCTGTTGTGAA TTTATGTTCTGATCTTGGTTCATTTTCTCCAAATTTAGACTAACAGCCCT TTTACCGTTTTTCTGAACTCTTCTTGTGGAACGGCTGTAGGATGGGGGTG TAGAAGGAGCCGCATGCCTTAAAACGCAAGAATTTGTATCCGTCTTTTTC TGCACACGCGCCCATTACAACACATGGCATGAATTCTTACCACCAAGTGC CCCCCCAAACCCTGTGCCCGACCCCTGCCTGTCCGTGTTCGCTTCTCACA GAACTACGATTTGGGCGCGCCCTTCTGCAGCTGCGTTGATTCGTCCAGGG ACGTGGACTGCATGCACTAA
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Coding sequence (CDS) from alignment at E_fasciculatus_S2_contig9029:2081..5100+

>mRNA_E_fasciculatus_S2_contig9029.17122.1 ID=mRNA_E_fasciculatus_S2_contig9029.17122.1|Name=mRNA_E_fasciculatus_S2_contig9029.17122.1|organism=Ectocarpus fasciculatus EfasUO2|type=CDS|length=1146bp|location=Sequence derived from alignment at E_fasciculatus_S2_contig9029:2081..5100+ (Ectocarpus fasciculatus EfasUO2)
ATGAAGTTCGCACACATTGCATCTATCTGCCTCGCGGCCACCGCCGCGCC
GCGCCTCGCTCGGGCAGCTACAGCTACGCCGAACTTTGACAACCTCTTGT
CGCTCGTCTCTCAGCTGCAAGAGGAGGTCATGCTGCTCTCCACCGAGTAC
GGCGCCAAGGACGACGAGATCGCGTTGCTCGTCACCCAGCTGACGGCTTG
CGAAGGCAGCGATGACTCTCAGGAGGAAGAAGGTGACGACTCCACACCGT
CCCCTGAACCGTCGACACCTGCTCCCGAGCCCGAGCCTCAGCCAGAGCCA
ACGCCGTCACCCGAGCCCGTGTCTGAGCCAGAGACGACACCGTCACCCGA
GTCCGTGTTTGAGCCAACACCGACCCCAGCAGAAGAGCCTGACTCGCCCA
CACCCGTTTCCGGCGGAGGGTTCTCCTTCTCCAAGGGCAACAGCTGGAAC
TACAATTTGGGGACGCCCGTTGACACAGACGCGGACGTCGACGTCTTCTT
CATCGACATGGACGCCGGCCAGGCCGTCATAGACGAGCTGCACGGCAAGG
GCAAGGGGGTGGTCTGCTACATCTCCATCGGCACGGTCGAGGACTGGCGT
GACGACGCGAAGCAATTCCCGTCCTCGGCAATCGGCGGGGACGTCGCCGG
GTGGGCGGGCGAACAGTGGGTCGACGTGAACGACCAGGATGTTCGTGAGA
TCATGACCGCGCGAGTGGAGATGGCGTCCAGCATGAACTGCGACGCTGTG
GAACCTGACAACATGATGGTTTACCTCGAACCTTCGACTGATGTTCAAGT
GTCCGAAGCGGATCAGATCGAGTACAACTCCTGGTTCGCCGACGTCGTGC
ACGCGTATGGCATGGGGGTCGGTCTGAAGAACGTGGTGGAGTTGGTCCCA
ATCCTCGTCAACAAGTTCGACTTCGCGCTGAACGAGGAGTGCCACGAGTG
GAACGAGTGCGTTGTTTACCAGGACACCTTCCTTGCAGAGGGCAAGCCCG
TGTTCAACGTCGAGTACAACTTGGGCACGTCCGTGTGCGACGAGGCGAAC
GCCCTCGGCCTTGACACCATCCTCAAGAACTACGATTTGGGCGCGCCCTT
CTGCAGCTGCGTTGATTCGTCCAGGGACGTGGACTGCATGCACTAA
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